Array 1 38988-38163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMZX010000016.1 Escherichia coli strain 192068CE NODE_16_10930135.216045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 38987 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 38926 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 38865 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 38804 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 38743 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 38682 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 38621 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 38559 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 38498 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 38437 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 38374 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 38313 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 38252 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38191 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55309-54487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMZX010000016.1 Escherichia coli strain 192068CE NODE_16_10930135.216045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55308 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 55247 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 55186 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 55125 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 55064 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 55003 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 54942 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 54881 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 54820 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 54759 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 54698 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 54637 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 54576 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 54515 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67744-68613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMZX010000002.1 Escherichia coli strain 192068CE NODE_2_23961132.960414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67744 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 67804 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 67864 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 67924 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 67984 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68044 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68104 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68164 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68224 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 68284 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 68344 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68404 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 68464 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 68524 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 68584 28 85.7 0 ....................A...C.CT | T,C [68604,68608] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77675-78903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMZX010000002.1 Escherichia coli strain 192068CE NODE_2_23961132.960414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77675 28 100.0 32 ............................ AGTAATTCCCCAATAATTCCCCGCGCAAAAAA 77735 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 77795 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 77855 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 77915 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 77975 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 78035 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 78095 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 78155 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 78215 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 78275 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 78336 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 78396 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 78456 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 78516 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 78576 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 78636 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 78696 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 78756 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 78816 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 78876 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //