Array 1 35222-36288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNG01000035.1 Corynebacterium tuscaniense DNF00037 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35222 29 100.0 32 ............................. ATCCCGCATCCTGAACGGTCGCGTGATAGATA 35283 29 100.0 32 ............................. AATGCCGGTGTGGTCACGTTCAACAGCCCACA 35344 29 96.6 32 ............................T CGGGCCGGTTGATTTCGTGAGCCACGCCGGGG 35405 29 100.0 32 ............................. TCGTCGGCATCAATCACTCCTGTCAACCTGGA 35466 29 100.0 32 ............................. AGTAGCACCTCGTCGGCTGCCGCCGGGGCGCC 35527 29 100.0 32 ............................. ATGAAGGCCGTCGCGCAGATGTTCGACGCACA 35588 29 100.0 32 ............................. TCCTACGAATGCATGATCTGCCTGGACCGGAC 35649 29 100.0 33 ............................. ACCGCAGCCCCAATGTTCCGCTGCGCCTGCTTA 35711 29 100.0 32 ............................. CGCGGCCCGAATAGCATGCCCCTCCGAAAACC 35772 29 100.0 32 ............................. CGTGAAATGGCAATGGTGGATCGACGCACCTT 35833 29 100.0 32 ............................. CGCGCCGACCAGCGCTCTTTCGACGCATGGGC 35894 29 100.0 32 ............................. ACCGCATAACAGGGGACGAAAAACACACGCCG 35955 29 96.6 32 ............................G CCTTGAAGCTCACCAGCGGTTTTACCGTCCGT 36016 29 96.6 32 ............................T GTGCTGTATGTCATCCCAGAGGATAAGGGGGG 36077 29 100.0 32 ............................. GCGGTTGACGCCAGCGAGCGCAGCACCGTCAC 36138 29 96.6 32 ............................G GAAATGTACTACGGTGGCCGGAAAATTAGGGA 36199 29 96.6 32 ............................G TGGAATGCTCAGCAGGGGGAGATCAATAAGCA 36260 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : AAGATCCAAGCCTTCTGACAACCTGCGCTTCAGAGGTTTCGCTACCCAGGTGTCGTAAACCACTGCAGCCACCCCAGCAGCATCCATGAGGTGCTGAGGAAGGCTAAGGCTTCCGCTTTCGTCCCCCGATTTTGCCCACAACGCCCGAGATCGTTCACTGAATTTTGGGGGATCAAGAAGCCCTCGAAGAGATTCTCCGAAAAGCGGGATGTTGTGTCGTCCCTCCATGGTCTTCTCCTTGATAGAGGCAGGCAGTGCGGTGATCATCAGTTTTGTACAAAGTCTCACAGTCAGCGAGACCTAAACTTTCAAGCTCAAAGCAAACACTGACTTTGGTTTGCTTTGTCAATTACCGGTAATTAGCCTATGCACTTTTCGTGAGATATATCCCTGCTTTTTGCGATTCGCTCACATCCCCACGTAAGCGAGGTAACATCGGGTTGGGCTTTAAGTTGTCCCAATTTAGAGTGGACAGTCACTCCCCCTCCAGTTCAGGGAGG # Right flank : GCTTCTGTAGACATTGAAACACCAAAGGCCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-1769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNG01000036.1 Corynebacterium tuscaniense DNF00037 contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 ............................. ACTACCTCTCAGTCTGTGCGTGCCTCTGCTAG 94 29 96.6 32 ............................G AATCCATCAATACCGCGGCAGCTGATACCGAA 155 29 100.0 32 ............................. AGCCTTGTCTGCAGGTCGCACGGTTCCCGGCT 216 29 100.0 32 ............................. AGGCGGAGACGATGCTGGCTGGTCTCGGGCAT 277 29 96.6 33 ............................T CAGGTGCTCAAGTGCACTTTCCGGAATCTTCCA 339 29 96.6 32 ............................G TTGCTGTTGCGGGTCAGTGTAAGCCGGAACAA 400 29 96.6 32 ............................T TCTGCGGTGAGCACCACTGTGGATCACGTTGA 461 29 96.6 32 ............................G ATGTGCTACCGCGCACAAGCCGTCCTCGACAA 522 29 96.6 32 ............................G GAGGCCACCAATGAGTAACCAGCAAGAGCGCC 583 29 96.6 32 ............................G GCGCAGCTCCTCCGTCGAGTAAGCGATTCCGA 644 29 96.6 32 ............................G GAGGCCACCAATGAGTAACCAGCAAGAGCGCC 705 29 100.0 31 ............................. CCTCGCCGGTCGCGGTCAAGGGGGTTGCGGG 765 29 96.6 32 ............................G TTCATCGCTACTGACCTCGTTCCCGCTGGTGC 826 29 96.6 32 ............................T ACTGCCGCACGAATGGCCGAGCTGGTCACCTT 887 29 100.0 32 ............................. CATCCAGCCGAGCAGGACATCCCACTCCGATG 948 29 96.6 32 ............................G AGATAGCGATGATTCAGCGCACCGAGCGCGGC 1009 29 96.6 32 ............................G ACGCGCACAATAACACGCCAGTGCTGTGAGAC 1070 29 100.0 32 ............................. TGGCTTATTACACGCCTCGCTGAGCAGGGGGC 1131 29 100.0 32 ............................. ATGTCGCCGATAGGCCCAAGTTTCGCGGCTTC 1192 29 100.0 32 ............................. CAGGAGACAACACTGACCGCGCCTGCGACCAG 1253 29 100.0 32 ............................. ACGCACGACGTGGAATACCCCGGTGTGAGAGT 1314 29 100.0 32 ............................. CGCACCATGACAGATGTCATCAAGGAAAAGAT 1375 29 96.6 32 ............................T TCTGCGGCAGGCAGTGGTGGCTCTTCCGGCTC 1436 29 100.0 32 ............................. ACGACTGTCACCACCGGCAACGCGGACTGCTG 1497 29 100.0 32 ............................. AGGCTGACCAGTGGGCAGCGAACCTACTGATC 1558 29 100.0 32 ............................. GAATCGGCGCAGGCGAGGTGTTCCCGGCAGAA 1619 29 93.1 32 .............C..............G TTTTTCGAAAGAAGCAACCCTGATGATTTTGA 1680 29 93.1 32 ...C........................G TAGTGATCGTCGCAGCGCTCGCAGGCGGCATC 1741 29 82.8 0 .............G...A........TTT | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.4 32 GTGTTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : ACTATGACCGTCATCGCCATTACCAATGCCAAG # Right flank : GGGGCTACGTTTGGGTTGAGCTGCCCAGAATGTGCGGCGGCTGTGGGGTGTCGGGGGTGAAACGTCGAAAAGCAAAAATACCCCCGCCCCAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //