Array 1 13350-16049 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHZ01000007.1 Pseudoxanthomonas sp. X-1 X-1_scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13350 32 100.0 34 ................................ TGCGCGAGCCTGGCGGACGTGTTCGACAACGAGG 13416 32 100.0 34 ................................ GTCTACGCCTACGCGGTGACCCACCACCAAGACC 13482 32 96.9 34 .....................C.......... GCTCGCGGCGTGCTGCGCAATGAGGTCGAGCGTC 13548 32 100.0 35 ................................ CACGGGTAGACGAACAGCACCGTCAGGCCGATGCG 13615 32 100.0 35 ................................ CACGGGTAGACGAACAGCACCGTCAGGCCGATGCG 13682 32 100.0 35 ................................ CACGGGTAGACGAACAGCACCGTCAGGCCGATGCG 13749 32 100.0 35 ................................ TTGGACGCCTGGTGGCGCTTCAGCGCGTTGTAGAT 13816 32 100.0 35 ................................ AGCACGGCCATCGGGTCGGCCTGCTGGGTGACCAG 13883 32 100.0 36 ................................ GGCGAAGGCTTCGACCTTGCAGCCATCGCGCAGACC 13951 32 100.0 35 ................................ CCGACGTTCGAAGAGGGCACGCCGCAGTACGTGGT 14018 32 96.9 34 ..................A............. AACAAGTACTGCTGAAGACCAGCCACACGCTGCC 14084 32 100.0 34 ................................ TGAGGCCCCATGGCCCCCAGGCGGTAGGGTGGCC 14150 32 100.0 35 ................................ CCGACGTTCGAAGAGGGCACGCCGCAGTACGTGGT 14217 32 96.9 34 ..................A............. AACAAGTACTGCTGAAGACCAGCCACACGCTGCC 14283 32 100.0 34 ................................ TGAGGCCCCATGGCCCCCAGGCGGTAGGGTGGCC 14349 32 100.0 35 ................................ TCTTGCATGGCTCTCTCCTGAGCTTCGTTGGTAGA 14416 32 100.0 34 ................................ TGTGCCGAACCGTTGGACGCATTGGTCACCTCGA 14482 32 100.0 35 ................................ TTGCGTGAGGAAATTGCCGCCATCCTGGCGGAGGC 14549 32 100.0 35 ................................ ATCCCCGCGGGCACCGTGCTGACCGGCCGCGTCCA 14616 32 100.0 35 ................................ TCTTTGCCCGCACCCACGGCGTGACGCCGCCCGCA 14683 32 100.0 35 ................................ ACATACTTCAACCTCGCAGTCGTATTCCTCCTTAG 14750 32 100.0 33 ................................ TTCAAGCTCGGCGAGGTGTGGGCGCTGATGCGC 14815 32 100.0 34 ................................ TCGTGGCGTGCGATCGCCTTGGCGAACTGGAACG 14881 32 100.0 37 ................................ CCGTCGGCCCCTCTCCCAATCGGAAGTAGCGGTAAGC 14950 32 96.9 35 ................A............... TCCACCAGCCGCGCGCCACCAGGCTTGATCGTGGT 15017 32 100.0 34 ................................ ATTGCCGGGACCTGCTGAACGTGGTTGTCTGGTG 15083 32 96.9 34 .C.............................. ACCGATGTCCTGAAGGGCATGGCGATCGCCGAAG 15149 32 96.9 35 .......T........................ TTGGACACCAAGGGCGTGGGTTCAATCCTGGACCT 15216 32 100.0 33 ................................ CAGGTCAGCTTGTACAAGGTCGAGCCAAGGCCC 15281 32 100.0 36 ................................ GACATCTTCACGGTCGAGGAGATCAGCGGTGGCATC 15349 32 96.9 36 ............C................... AAGAACAGAGCAGGGGAGCGAGAGGAGCACACCGAG 15417 32 100.0 35 ................................ TCGTTCAGCCAGCCGCCATCGCCGGGATGCTGCTT 15484 32 100.0 33 ................................ CAAGGCGGTGAGAACGAGGAGCCACGCGGTGTC 15549 32 96.9 35 .............C.................. AGCGCGGTGCCACCCCACGCGCCGTTGCTGGACTT 15616 32 96.9 33 .............C.................. ATGTTGATGCCGATGCGGCTCCTGCTCATCGTC 15681 32 96.9 36 .............C.................. AGAACCGCGATCTCGCCGCGCTGCTGGGCCTTGGAC 15749 32 96.9 34 .............C.................. TATGAGCACCGCCAGGCCGCGTAGATCAGGCGTC 15815 32 96.9 37 .............C.................. ATTCGTACTGGCTCCGGTAGTTATAGATGGCGCGCGC 15884 32 93.8 35 .............C..............G... TCCTGAGCGAGGATCAGGTAGTTGCGCACCGGAGA 15951 32 87.5 36 .C....T......G.............A.... ATCACAATCACCGCACTGTACGAACAGCACCAAACC 16019 31 84.4 0 ......T......-C....T..A......... | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 98.3 35 GTCGCGCCCCTCGTGGGCGCGTGGATTGAAAC # Left flank : GCTACCCCGCCTTTCTTTGGAAATGAGAGCGTCCGGATGATGGTCTTGGTCAGCTACGATGTCAGCACCAGCTCCCCAGGCGGCGAGAAGCGCCTCCGCAGGGTCGCCAAAGCCTGCCGCGATCTCGGCCAGCGCGTGCAGTACTCCGTTTTCGAGATCGAAGTCGAGCCCGCGCAGTGGGTGCAGTTACGTCAGCGCCTGTGCGACCTGATCGATCAGGATGTGGACAGCCTGCGCTTCTACCAGCTGGGCGCCAAGTGGGAAGCCCGCGTCGAGCATGTGGGTGCCAAGCCAGTGCTTGACCTCAAAGGCCCGCTGATTCTAACGCGAACCACAAGCGTCCTGGCATATGCCGGCAGGTTCGCGGCCGCGTAATTCATTGTTCCTGAAAGACAATTTCTTTGGAACACCATATCTTAACTGCCCGCGCTCAGCACACCGCGCACGTTCGCGAGAAGTGCGGAATTTCGCAATAGCAGGTAATCGCTTACGCTGGCGCG # Right flank : CACCGCATACGTGGCGCGCACCGCATCGTTGCCAGCGGCCTTGTTTTTGAGGGTCAGACGCCAGCGCGGCTGCGACATGAGAAGGAGAACGGGCGGGGGGGGCGCAGGCTAGCAGTGGCAGGTGCCGCGCAGGCGGGCGCCCGCGCGCTTCAGCCTTCTCATGCGAAAAGTGACCTGCGGAGACGTGTTGCGACCAGTCGATCAGTAGGGCGGTACTCCCGCACAGGATGAGAGGTGACGTGTGCCCTGCGGCCGATGCGACGCGACAGTGGATGGGAGGGAACATCCCCTGTCACGAACGCTGACCGCAGGGCACACGTCGGGTGAGCGCAATCAGTGCCGGTCGACTTGAAGGACAGCCTCCGGCCAACCGGGTCTGGTCAGCGCTTGGCCGAGGCCAGCAGGTCGGCGTTGAACGCTGCGGCGTGCATGGACGTCAGCCGTGCGGCGCGCCGGCATACCCGCGCCCCAGTCCTTGTAGAAGATCCGGGCGCCGTCCT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //