Array 1 105102-103466 **** Predicted by CRISPRDetect 2.4 *** >NC_015636.1 Methanothermococcus okinawensis IH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 105101 30 100.0 36 .............................. TATTCTTCGCATTCTTCAGGGTTTATATTTCTATTA 105035 30 100.0 36 .............................. CTATATGTGTAATGGTGGTGGTTGTGGTAACCCCCG 104969 30 100.0 36 .............................. AAGATGATGATAGCGGCTAATATAATAGGGATGATT 104903 30 100.0 37 .............................. TAAAAGAAAAACTGTAAAACCAACAACCCCTAAAAAT 104836 30 100.0 44 .............................. TGGAGTAATGGTATGCCCCACCTGGACATTCCAATATCTCTTCC 104762 30 100.0 38 .............................. AATTCACCAATATATTAGATACGTATGAGGTGAACACA 104694 30 100.0 38 .............................. GATGAAACACATAATTCAGTTAAACTTATTTCATTTTT 104626 30 100.0 38 .............................. TCTGGTAATAAAAAATCAATTGGTGTTGTAGTTCCTAA 104558 30 100.0 37 .............................. AACATATCCGTTTAAACTTCTTGCTGGAAATTTCCAG 104491 30 100.0 36 .............................. CCTAAACTAAAACAGATGTTAATTACAAACTACTAT 104425 30 100.0 34 .............................. TTAGCCTACTGTATAAGTTATCAACATCAATAAC 104361 30 100.0 36 .............................. GAATCATCAACTACATATGCTTTAACGGATGTGATA 104295 30 100.0 37 .............................. TTTTTTAGATAATTTTTTAGATAATTTTTTAACGACT 104228 30 100.0 37 .............................. TAAAAAATTTAACAAAATCATGTGTTTTAAATTTATC 104161 30 100.0 37 .............................. ACGACCATCCGCAAGCCAAACTAAAAAAAGACATAAG 104094 30 100.0 34 .............................. ATAAAATACTCTCAATAATTTGAAGTATTTGTCC 104030 30 100.0 36 .............................. TTTTTTATTAACATAGGTTATTATTTCGCTTATTTT 103964 30 100.0 39 .............................. ATACTTTTAATATGTATTCTTTTAATGTTGGTTCTTTAA 103895 30 100.0 37 .............................. GCAAGGAAAGTTAGGTTTTTTCTGCACGAACTTTTAA 103828 30 100.0 36 .............................. AACGATTTTGCTATCATTGAAAGAATATCTGCACTT 103762 30 100.0 38 .............................. ATTTTAGTATCAACTGATATAATACATTCAAATTGATA 103694 30 100.0 35 .............................. TTGAGCTCTTTAATTATAATTATCTCTTCTACTGC 103629 30 100.0 36 .............................. GGAGATGAATCATATAATAAATTTAAAACATTTTAT 103563 30 100.0 38 .............................. ACTATTTTTACATTTTCAATTTTTGCTGTTAATTTTCT 103495 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 25 30 100.0 37 GTTAAAATCAGACCATTGATGGATGGAAAT # Left flank : AAAGGTATATATCATAGATGTTCGGAGCTCGTGTTTAAAGTTGAAGGAGACTATGAATTAATTAAGTTTGGTTATGAATGCGGATTTGGTGAGAAAAATTCAATGGGCTTTGGAATATGTAAAGTATAAATCCTTACTAATTTTACTTATTTTTTTATTATATTGCTTATATAATTTTTATTTTTTTAAATCTCTTTAAATTATTCGTCGTAAATCACTAAAATTTTTAGTATAATTAATATATTTATATAAATAAAATTATAGAGATTTTTAAGAGATTTTTTATATATTATGTTGTTTTCATCTGTTCCTTGTAAATTTTTTAGATTTTAAAAAAATATCAATTTAATATCTTTTATATTCCTAAATATCTCCAAATCATCCGTCGTAAATCACCACCAAAACTATATAAATAACAAAAATCAATGTGATTCGAGATGCAAGGTTTATATAGGGGTAATGCAAAGGTATTTTATAGAAAATAAGAAAATTTTTGAACT # Right flank : CTAAATAAAGAAAAATAGTTTATTTTAAAAGGATATAAATTCAATTAATACCCAAAAATCTTTTAAATAAATCTTTTAAAATGGTTGAAGGATTGTCCATATCCCCTTTTTCATTTATATACTCTATAAGATTATTTTTTATTACAAATTCCAGAAACATATTTAATTTTTTATCATCCATTTTTTTTAATATGCTTCTAAATCTTAATCCAAAATCAATTTCATTACCTATACTTTTTCTCCACATGAGTTCATATTTTTTTAAATAATTTATATTATAATCATTGGATAAAAATTCATCCACAATTTTTCCACAGATTTTAGCACATTTTGCCCCATAATATAGACCTCCTCCACTTAAAGGTTTTACCTGTCCTGCGGCATCACCTACAAGCATTAAATTATTTTTAACAGTCGTTTTTAGATGACCTATTGGAAGAGCTCCGACTGAAAATTCTACTGGAACAGCATTCTTCAAAATTTCAGATGCTATTGGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTGATGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 206578-207407 **** Predicted by CRISPRDetect 2.4 *** >NC_015636.1 Methanothermococcus okinawensis IH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================================================================================= ================== 206578 29 100.0 39 ............................. AAAATGACAAAACATAGCACATTAGATATGCTGCTAAAT 206646 29 100.0 39 ............................. AACAGATTGGGAATGATAACATTATCTACAATATAATCA 206714 29 100.0 39 ............................. ACTCGAAATTAAGCTTTCGGAAGGAGAAACATTTAAATT 206782 29 100.0 39 ............................. ATACATAATACACCCTTCGATAGGATTCTTCATTATCTT 206850 29 100.0 39 ............................. ATAGTCTCACCTTAACCTAATCCTATATCTACATATTTA 206918 29 100.0 37 ............................. ATGCGTAGGATACCCCATTTCCAGCAACTTTTCTTTT 206984 29 100.0 38 ............................. ATGTATTTTTAGTTTCGAAAGGAACTGATTATGATTGG 207051 29 100.0 37 ............................. TTCTCTTTTTGAATTTCTTATATTAATCTATAAAAGA 207117 29 100.0 231 ............................. TCTTTATTTTATTTAAAATAAATAGAGTATAAAAATAATTGGGTGAAAAAATGGATTTTCTGTTTAGTTTACTTCTAATATTTCTTTGTGGTTGTGGCTTATATGCGTTAGCAAACCACAATGTGAGAAAAGTGCTTGTTGAAGAAATAGATAAAGATATCGAAGAAATGCAAAAAAAAGATGATAATAAATAAGAAAGTCGATTTTATGAAAACATTGAGAAATAATTAA 207377 29 79.3 0 ..........TCAT.C..T.......... | TT [207398] ========== ====== ====== ====== ============================= ======================================================================================================================================================================================================================================= ================== 10 29 97.9 60 GTTAAAATCAGACCATTGATGGATGGAAA # Left flank : ATTAAATAAAATCTAATATTTATAATCTACTGTTTATGATTTTCTATGGTGCATCTTAGGAGATTTTTTTATTTTATAAAAATATTAAGTTATTTTAATATTTTTTTCTTTATTAGTAATATATTACTATCCCTGTAAATATTCATCATTTTTTTATTATATTGATTATTTAACTTTTATTTTTTAAAATATCTTTAATCTATCCGTCGTAAATCGATGGATTTTTTAGTATAATTAATATATTTAAATAAATAGAATTATAGAGATTTTTAGGAGATTTCTTATATATTATATTATTTTTATCTGTTCCTTGTAGATTTTTTAGATTTTAAAAAAATATCAATTTAATATCATTTATATTCCTAAATACCTTTAAATTATCTGTCGTAAATCACCCTTAAAACTTATATAAATAACAAAAATCAATGAGATTCGAGATGCAAGGTTTATATCGGAGTAATGCAAAGTTATTTTATGCAAAATAAGAAAAATTTTGAACT # Right flank : ATAAAAAATATAAATATCATAATTTAATACCAACGATTTTGCTTAAACCATCCTCCATATAAACCCCATAAAGTGTATCAGCCTTAGCTATCATTTGCTCCCTATGGGATATCACTATAAATTGAGATTCTTTTGATGCATTTTTAATCATATCTCCTATTAAAGTTGCATTTTTTGTGTCCAGTGCAGCATCAACCTCATCAAGCACATAAAATGGTGCAGGTGTTAGTTTCTGTATGGCAAATAAAAATGCCAAAGCTGTAAGTGATTTTTCTCCACCGCTCATCACATCTAAGCTTTGAAGACTTTTATTTTTAGGCGAAGCATCTATTAAAAGCCCTCCTTCAAATGGATTTTCAGGATTTTCTAAACTCAGTTTTCCAGTTCCCCCAATATTTTTATATATCTCTTCGTAATTTTTAGCAACTTTTTCATATACTTCCATAAATACCTCTTTTTTCCTTTTCTCTACCTCTTCTATTAATTGAAGGTATTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTGATGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 224644-230898 **** Predicted by CRISPRDetect 2.4 *** >NC_015636.1 Methanothermococcus okinawensis IH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================= ================== 224644 30 100.0 36 .............................. GATGAAGACGATAATGGCGTAACATACGGGGACAGC 224710 30 100.0 36 .............................. CCATATTTTCACCTTATCTTTTTTTACAGCTCAGAG 224776 30 100.0 38 .............................. TTTTTTGGTATATAGGTAGTATAATGGTATAAAAAATG 224844 30 100.0 36 .............................. CCGTATAAAATTTGAAAAAAGTAAATAATTATTTTT 224910 30 100.0 35 .............................. GACCTTGACAGCATTACAGACTCAATAATTGAAGA 224975 30 100.0 39 .............................. TACATTGATGACGGGATGATTTTTTAAGCTCTTATTTTC 225044 30 100.0 54 .............................. TGATTTATATTTTGGCATCTCAAAATGTAAATCAGAACAAGCTATCGCCTCCAT 225128 30 100.0 38 .............................. CATTATTAGAATCAAAAATGAGGTTTAAACTCCATCAA 225196 30 100.0 36 .............................. TCTGGAACTATATTTCTATTAACCCATAGGTGGAAG 225262 30 100.0 37 .............................. TTTTTGCTTGGAATTTCATAAACTAATGGTTTTGCTC 225329 30 100.0 44 .............................. GTGGTAAGTTTATCAATGTATTTTTTAGAAGAAATGTTATGCTC 225403 30 100.0 77 .............................. TTTACCCTGATGCTTCCAGTGCGGGGAGCTCATTATTTCCTTTTGTATTTTACATAAAATAAGAAAATTTTTGAACT 225510 30 100.0 39 .............................. TTTACTGCTTTTACGCTCGTTATATATCCCTGTTTAGTT 225579 30 100.0 38 .............................. CAATATCGTGAGCACTCAGGATGTGTCACGATTGACAC 225647 30 100.0 38 .............................. CCTCTTTCCTCAACTTGTAATTTACTATCTATACTTAC 225715 30 100.0 41 .............................. TGTTTAAGACATCATCTATTGTAAAAGCCTTTCCTTTTCCT 225786 30 100.0 35 .............................. CCTGAAACTGCAAAAATGGTGGGCGTTTCCCCTCC 225851 30 100.0 38 .............................. TCTCTAAATCTTTTATGCCTTCTTTTTGCTTATATCGG 225919 30 100.0 37 .............................. TTATTTCCAATTTTAATAGTGATATCCTCAATAGATT 225986 30 100.0 35 .............................. TCCAATCAAAGAGGTGAGGTTTATGAATATATTAC 226051 30 100.0 36 .............................. ATACAATGTTAATATATAAGATGTAAATATGGAAAT 226117 30 100.0 36 .............................. CCAATTATCATCTAAATTATTGTTATACTCATATTC 226183 30 100.0 37 .............................. AAATTCATAAAATTAGGAGATGGAGATAACATATACT 226250 30 100.0 40 .............................. TAATTATAATGACATGTATCTGGTTATGGGGGCTAATCCT 226320 30 100.0 35 .............................. ACCCCCAATACTTTTTTAACTTGTTTAATTACAAA 226385 30 100.0 37 .............................. AAATATAAAGGAGAGGGACATTTCCAAGAGGAAGATA 226452 30 100.0 35 .............................. AATTAAACTGAGAATAAATTATATGGATATACACT 226517 30 100.0 37 .............................. ATTAAAGATATTGAAGAGCCAGAGCCTGCGGAAACTC 226584 30 100.0 37 .............................. ATAAATAAAGGTAATGAGAATATCTATTCGTTTGAAG 226651 30 100.0 35 .............................. TCTTTTATAATTCTATATGTACCATACCCGGTTGG 226716 30 100.0 38 .............................. ATAAATGCTGAAAATAGTAAAAAAGATAGGGTATTTTT 226784 30 100.0 37 .............................. TATGATGATGAAGATGGAGGATACGACAGCATTTCAA 226851 30 100.0 37 .............................. AGGTTGTGTATTTAAATTTCTCATGTCGATATACTTC 226918 30 100.0 36 .............................. TTGTAATGGCCAGTCGATGTCACCCTTGTTGAGGGC 226984 30 100.0 35 .............................. GATAGTTAAAGAATTTAATGAAGTCTAATTTAGTT 227049 30 100.0 39 .............................. ATCTTTTGTAAATATTCATTATCTTTTTCGTAAATTTTA 227118 30 100.0 37 .............................. AAATGAAAATGAAGAAAATAATCCACAAGAAAATAAT 227185 30 100.0 35 .............................. CTATGTGGTTCATTGAAATAGGTAGCTATACCAAG 227250 30 100.0 37 .............................. GTTAAAACAATAGAATTATTTAAAGTCTCATCTAAAT 227317 30 100.0 37 .............................. ATTCTGCCTATAAGTCATAACAGTAGCTAAAGGACTA 227384 30 100.0 35 .............................. AAGTGAGTATTTCATACAAAAATACGGAGGAAGCA 227449 30 100.0 39 .............................. ATAAAGTCTTCGTTCCAGATAATGGAATTGATATAGCGA 227518 30 100.0 38 .............................. AAATTACTATAAAAATGGTGTTATAAACAATATTATGA 227586 30 100.0 38 .............................. TGCTTATACTACAAAAGATTCTTACCAACTTTCCTTCG 227654 30 100.0 39 .............................. ATCCATTAATGGGGTGACTTCTTTCTCCCAGTCCCCTAC 227723 30 100.0 36 .............................. ATTATCTGATGAGGATAAAGAAGAAACACCAAAAGC 227789 30 100.0 38 .............................. CTATCTCACTTTTAGTATCTGAGATATACTGATCAATA 227857 30 100.0 41 .............................. TTTTATATCTTGTTCTTCTTCTGTCATTCTTTCACCAAAGA 227928 30 100.0 38 .............................. CCACTTGCATCTGAATCTGATACAATTGTTCCATTAAC 227996 30 100.0 37 .............................. TGCAAAATGTATGTATGAATGCGAACCGCCAGAGCTC 228063 30 100.0 37 .............................. TTATTAATATCCAACCTCCCAATATAACCTATTGTCT 228130 30 100.0 35 .............................. CTTTTAAATTCTCAATTTCTGTTTTATGCTTAGCT 228195 30 100.0 37 .............................. TTTGGGGCGCGCCCCTACCGAGCTAAGTATCCATTCC 228262 30 100.0 37 .............................. AAAGAGGTATCTTTCAACTCAGGAAGTTCATTTGCAG 228329 30 100.0 39 .............................. TGTCATATATATCTATACTTATTTCATCCCCTATTATAT 228398 30 100.0 42 .............................. TAATTTTTAATTTTTAATGTCATTTCTATTTTATTATTAATA 228470 30 100.0 39 .............................. TCAATTTTTACTTGGAAATCATTTAGGTCGTAACTGTTT 228539 30 100.0 38 .............................. TCTTGGAATTTCATTTATATGTTCATCTTTAACATATT 228607 30 100.0 38 .............................. TCTTGGAATTTCATTTATATGTTCATCTTTAACATATT 228675 30 100.0 37 .............................. TTGGGATTTTATAATAAATGAAATTCGGAGCAATGGC 228742 30 100.0 37 .............................. TCTAATGGTCTGATTATAAATAAAATATAAAAATTAA 228809 30 100.0 36 .............................. CTAAATTTAACATTTACTCCTTCTAAAACAATATAT 228875 30 100.0 36 .............................. TCATTGATGCAGAAATCTAAAAATTCCTCTAAATCA 228941 30 96.7 35 ...............C.............. TTCTTGAATTTAAAATATTTTATCATTATTTCACC 229006 30 96.7 38 .........................A.... TTGTCAAATCTTATCCCTACTTTATTACTGGATATTGG 229074 30 100.0 37 .............................. CAAGAACCTATGATGACAATGGAAATGTCGTAATTAA 229141 30 100.0 34 .............................. CACTTTTTTAATTCCGATTGTCAGGCTTCGCCTG 229205 30 100.0 36 .............................. GATTTCTATATTAGAATTCATCAGTTATATCCCCAC 229271 30 100.0 39 .............................. ATTATTTGTATATCTCCTGAGGAAATGTTTGAGTTAGAT 229340 30 100.0 35 .............................. CAGTTAAGAAAGTAACTAAACAAGGAAAATACGGG 229405 30 100.0 36 .............................. TTCAATGATGCTACAAATAGTTTGTTTGTAGTTAAG 229471 30 100.0 35 .............................. CAAAAAAACATACAACAAGCGTATCGACAATAACT 229536 30 100.0 37 .............................. TCCTTTATTTAATCAATAAGGTATTTTACATTGAGTT 229603 30 100.0 37 .............................. TTTTTTATATCATAACCCTCAAAATTCCAGTAATCCT 229670 30 100.0 37 .............................. TTTTGTAAGGGTTATTGATTTTGAATTTGTTACATAA 229737 30 100.0 36 .............................. GCATTTTTATCACCCTTTTATTTTATTTTTTTTATT 229803 30 100.0 36 .............................. TATCTATTTATTAACTCCGTTGGGTTTTGAATAACT 229869 30 100.0 35 .............................. TCAATAATATTTCTTGTTGGAATATTGACTTCCTT 229934 30 100.0 39 .............................. CAATGATTTAATCCTTTCCGTATGGTTCTTCCCCTCCAC 230003 30 100.0 36 .............................. TACTTGGAGGAACTATTCCCGCAAGTGCTAATGATG 230069 30 100.0 37 .............................. TCGATACGAGATTAAATTTAGCAACACCACCATCATA 230136 30 100.0 37 .............................. TGATAATTATTATATCTATATATTTGTATGGGATTGC 230203 30 100.0 36 .............................. TAGTATAAATACCTGCGGCTACACCAGCCCCTACTT 230269 30 100.0 36 .............................. CATTTGTTTTAATAAAATAAAAATAAAATATTATGT 230335 30 100.0 38 .............................. GTGAGATTAAAAACTTCAAGAGCCCTGAGGTATCTAAC 230403 30 100.0 36 .............................. AATTCTGAAAGGTTAGGAATGATAACATTATCAATA 230469 30 100.0 37 .............................. TTTTGTGCTGGCGTGATACCATAATGTGATTTAAGAA 230536 30 100.0 36 .............................. TAGTTCAAGTTCAAAAACATACAATCCAAATACAAC 230602 30 100.0 37 .............................. ATAAATTTATTGGAATAAAAATTTTCTGAGTCATTTT 230669 30 100.0 38 .............................. TAATTTACAATACCAGAGTTTATCATATTTACATTATC 230737 30 100.0 37 .............................. CCAATAACACATATAAAAAAAGCAATATATAAAATAA 230804 30 100.0 35 .............................. TTATATACTATGAGCGATAAGTATAATTTAGAAGT 230869 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================================= ================== 93 30 99.9 38 GTTAAAATCAGACCATTGATGGATGGAAAT # Left flank : TCCTGTTTTTTAGTCATTGCATATTTGATATTAATATATATTTATCTATAATTTGTTTTTTATTGTATAAAAATATTAAGTTATTTTAATAATCATTTTTATTTCTTTTATCAATAACCTATTATTATCCCTACAAATATTCCTTATTTTTTTATTATATTGCTTATATAATTTTTATTTTTTAAAATCTCTTTAAATAATCTGTCGTAAATCGATGGATTTTTTAGTATAATTAATATATTTATATAAATAAAATTATAGAGATTTTTTAAGAGATTTCTTATATATTATATTATTTTTATCTGTTCCTTGTAAATTTTTTATATTTTAAAAAAATATCAATTTAATATCTTTTATATTCCTAAATACCTTTAAATTATCCGTCGTAAATCACCCTTAAAACTATATAAATAACAAAAATCAATGTGATTCGAGATTCGAAAAGTTTATATAGGGGTAATGCAAAGGTATTTTACATAAAATAAGAAAATTTTTGAACT # Right flank : TGCTGTATTTAATATATATTGGGTTGTTAAAAACGATAAAAAACAGGTAATTTTTTATTTCATTTATTATTTCTTAAAATTCATTGATAATAGTCTCTTTTATAGCTATATTTATTTTGATTAACCATAAAATAATAAATATGTTAATCATAAAAAATATATATTTAAAAGAGCTCACCCTTTTTATCCAATTCCTTTAATGTATGCCATTGTTTATCTTTATCAGACAGTATTGGTTCATCAATAAGCCAGTCAATACCAATATCACCATCATTCCAAATCACACCACATTCATATTCAGGAGCATATTTATTATCTACCTTATAAACAACCTCAGCCTCACCACTTAAAACACAAAAACCATGGGCAAATCCTCTTGGAATATATAATTGATGTTTATTATACTCTGAGAGCACAGCACCTACCCACTGCCCAAATGTTGGGGAGCTCCTCCTTAAATCCACGGCAACATCATAGATAACTCCCCTTATGCACCTTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTGATGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1304622-1302586 **** Predicted by CRISPRDetect 2.4 *** >NC_015636.1 Methanothermococcus okinawensis IH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 1304621 30 100.0 36 .............................. TTACGGCTCCGAGGATTGCCCTCATCATCGCTCAAA 1304555 30 100.0 36 .............................. TGTGTATAGTGTCACAGGGACATAATTATTGTATAT 1304489 30 100.0 37 .............................. TAATTTACAATACCAGCGTTTATCATATTTACATTAT 1304422 30 100.0 36 .............................. AATTTTGCACATACTCCGTTAGGTGGACAATCTAAG 1304356 30 100.0 52 .............................. GTAATCATATTGGTAGGAATTACAGAATTATTACTTCCGTTAAAATCAGACC 1304274 30 100.0 34 .............................. AATCATGCTGGGGGAAGGCTCATCATCAGAATGT 1304210 30 100.0 38 .............................. CATGATTTAGTTTTAAATTTAGACATATTATATACCAC 1304142 30 100.0 37 .............................. CCAAACCCCATTGATATAATAATAACGGGAAAATTAT 1304075 30 100.0 36 .............................. TAATATTAATTTTATCGATAACATAATAATAACTGG 1304009 30 100.0 37 .............................. TTGAATATAAAAATGGAGTCAGAACTTTATGGTATGG 1303942 30 100.0 36 .............................. ATATAAAAAAGAATATAATGTGTGGCGTAATAAAAA 1303876 30 100.0 37 .............................. ACAAATTCTACGATGCGATACATTTAGTTCCAAGAGA 1303809 30 100.0 36 .............................. TCTTATATGCTTCATCTGTTGGGTCATAAAATAAGC 1303743 30 100.0 36 .............................. TCTTATATGCTTCATCTGTTGGGTCATAAAATAAGC 1303677 30 100.0 36 .............................. TTGAATTTATTAACATATCTATTTTATTTATACAGT 1303611 30 100.0 37 .............................. TCGATTAATTCATAAGTCCTTGTTTTGCTTTTATTAA 1303544 30 100.0 36 .............................. TTTTAGTTCCTTCCTCCAATAATCCCTTTTTAGTTG 1303478 30 100.0 37 .............................. GATAAACAGATTGAAAAAGAAGTTAAAGAGATAGAAG 1303411 30 100.0 37 .............................. GGGTTCAGTGCTGTAAATGAATGGGGGCAAAATCTCG 1303344 30 100.0 35 .............................. AAAGATACTGCAAGTTATAATTTTTATGCAAAATC 1303279 30 100.0 39 .............................. GTAATTTGTAAGGATGTGAAATGATGTTTTTTAATTTAG 1303210 30 100.0 36 .............................. AAAGTTATTCAACGATTCGCTAATAAATTATCGCTA 1303144 30 100.0 36 .............................. TATATGAATACATCCCCCAATCTGCTAATATTGCAG 1303078 30 100.0 36 .............................. TTATATATTGATTTTTGAATATTACTAAATAATTAA 1303012 30 100.0 34 .............................. TTACTTTTTTCATTAGCTTTATAATATTTGTTAA 1302948 30 100.0 37 .............................. TATTGGGCAAGAAGCAGTGTAGCACCGTGTATAATCC 1302881 30 100.0 37 .............................. GCAATATTGTTTTCAGGGGGAAAAGATAGCACTGTTG 1302814 30 100.0 36 .............................. CAGTATATATAATGTCATTGATAATAAAATACGCGA 1302748 30 100.0 36 .............................. ACATCTCTTTTAAAAAATAATAATCATTCCTGCTAT 1302682 30 100.0 37 .............................. ATAATTATATCCTTTCCCTTCTTTGTTTTAATTTTAT 1302615 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================================== ================== 31 30 100.0 37 GTTAAAATCAGACCATTGATGGATGGAAAT # Left flank : TAAATCGGTTGATGATATAAATACCATTGATGATGTAAAAAGAATATTTGCAATTCAAAAAGGTAAATCTAAAAAATTTATGAAAGGAGATTAAACTCTACTAATAAGTTTTTTAATAATGCATAAACTATCCCTGTAAATATTCTTTATTTTTTTATTATAAGAATTATTTAATCTTTATTTTTTTAAATCTCTTTAAATCATCCGTCGTAAATCGATGGATTTTTTAGTATAATTAATATATTTAAATAAACAAAATTATAGAGATTTTTAGGAGATTTTTTATATATTATGTTATTTTTAATCCTTCCTTGTAAATTTTTTAGATTTTAAAAAAATATAAATTTAATATCGTTTATATTCCTAAATATCTATAAATCATCCGTCGTAAATCACCCTTAAAACTATATAAATAACAAAAATCAATGTGATTCGAGATGCAAGGTTTATATAGGAGTAATGCAAAGCTATTTTATGTAAAATAAGAAAAATTTTAAACT # Right flank : TTATATAATTATATAACTAATTTGTCCTGTTTTATCAGAGCTCCTATTACACTTTTTTTAACACATTTTGCAATTATTTCCCCCAACTTAGTATGACCACCAGTATAGTCTGCCTTTTTTCCAAATCCTTTGACAACAATTATATTATCTGTCCCTGTTCCTGTGGCGGTTAGTTCTGGATGTTTCGTGCTTTTTATATTTAATTCCTGAAATGCATTTGTTTTTGCTTCGGTGATTGTAATAATTGCCCTTGCCATTGCTCCGTCCGTTAAATCCGCATTTGTTATAAGTATTATATTAACAGTCCCAATTTTTTCTTTTTCCTTTTCTTTTTCGACCAATTTTCCATTAACAACTTTATATGTCTTGAAGTCCTTTTCAATATAATCGGCCTCTTCATCGCCCAACCTTATGGCATTATATTTTGCCCCTGCTGTTGTAAATGCTATTGCGTAAAATTCATCAAATTCCTCCTTTGCAATGGCTAAATTGTCCATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTGATGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 1529273-1531189 **** Predicted by CRISPRDetect 2.4 *** >NC_015636.1 Methanothermococcus okinawensis IH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1529273 30 100.0 33 .............................. TTAATTTTGGTATAATAAAAAACCTCAATTTGA 1529336 30 100.0 37 .............................. TTTTTTCACCTTTATAAGTAATTAGGGATTGCCCCTG 1529403 30 100.0 37 .............................. CAAATATTGCAACATTTTTGTAAGAATAATTGTAAAA 1529470 30 100.0 45 .............................. TATTTATATAGTGATTTTTGAGTTATAGTATTAAGTGTAGTATCA 1529545 30 100.0 36 .............................. TGCAATCATTGAAAAAATATCTGCACTTATATATTG 1529611 30 100.0 35 .............................. AAAGCTCGTTCTGGTGTCATCGAAATAATTTTAAC 1529676 30 100.0 37 .............................. TAATACAATTTCTCATATTTCGCATACTATTCATAAT 1529743 30 100.0 35 .............................. AAAGCTCGTTCTGGTGTCATCGAAATAATTTTAAC 1529808 30 100.0 37 .............................. TAATACAATTTCTCATATTTCGCATACTATTCATAAT 1529875 30 100.0 35 .............................. AAAGCTCGTTCTGGTGTCATCGAAATAATTTTAAC 1529940 30 100.0 37 .............................. TAATACAATTTCTCATATTTCGCATACTATTCATAAT 1530007 30 100.0 36 .............................. CATTAAATAGTGATGTTCCAAGAATTAAAGTGTTCC 1530073 30 100.0 42 .............................. GGAGCTCCGATAGTGTTGAGATTTCATAATATATATTATCAT 1530145 30 100.0 41 .............................. TTATTATATTCATCATCTAAATTAATTAATTCTTCCTGCGT 1530216 30 100.0 36 .............................. TTGAATGACTATATACATCATTCAAAGGCAAATTTA 1530282 30 100.0 42 .............................. TTCAATAGATGAAAAATAAACAGTCTGTAAATAGAGCTTCAT 1530354 30 100.0 39 .............................. TGAAATATTAAGTGACTTGGAACTTATAAATGACATTGT 1530423 30 100.0 35 .............................. TAAGCCTCTTTTTGTGATGCATCATAATAGTAATC 1530488 30 100.0 34 .............................. AGATTGGAAAGGCAGGAATGAAAGGTGTTAGATA 1530552 30 100.0 38 .............................. ACGCATAAATCTTTTATCATATCATTCCTCAAAGCTGC 1530620 30 100.0 37 .............................. CTTCTATTTTATTAATAATATATTGTGCCACTTCATC 1530687 30 100.0 36 .............................. CTAAACAGTGCATACCGCACCTACATGTAATTTTAT 1530753 30 100.0 38 .............................. AGATTCTATCTTTTCGGGTCTTTTAGGTTGTGGTTGAA 1530821 30 100.0 35 .............................. CTTTAATGTCTTCGTCAATAGGTTCTGGCGTTTCC 1530886 30 100.0 36 .............................. ATAATTTCACCTTCATTATCTAAATTCCAATTAATA 1530952 30 100.0 44 .............................. GAGGATGTTCTTACAAATGCATTTTATAAAGGATATTTAAAAGA 1531026 30 100.0 37 .............................. TAAATCTATTATGTAATAATATTCAATGTCTGAAATA 1531093 30 100.0 37 .............................. AGATATATGAAAAAGAAAAAAGAAAAGCAAATTATAG 1531160 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ============================================= ================== 29 30 99.9 37 GTTAAAATCAGACCATTGATGGATGGAAAT # Left flank : CGGATGTTCCATCCATAACCACAGTAGGACCAAAAGGTGGGACTCCCGTTGCAGTATCTATTGCTAATGGCATCATAGCATTAAGTAAAAATAAAAGGGCATAATTTATATAATAACATTTAAATTTAAATCCTTGCTAATTTTACTTATTTTTTTATTATATTGATTATTTAATTTTTATTTTTTAAAATATCTTTAATCTATCCGTCGTAAATCGATGGATTTTTTAGTATAATTAATATATTTAAATAAATAGAATTATAGAGATTTTTAAGAGATTTTTTATATATTGTGTTATTTTTAATCCTTCCTTGTAAATTTTTTAGATTTTAAAAAAATATCAATTTAATATCTTTTATATTCCTAAATACCTTTAAATTATCCGTCGTAAATCACCCTTAAAACTATATAAATAACAAAAATCAATGTGATTCGAGATGCAAGGTTTATATAGGGGTAATGCAAAGGTATTTTACATAAAATAAGAAAATTTTTGAACT # Right flank : CTTTTTAATTTATAATTAAATATTTAAAGAACACTTATAATTGCTATAAAGAATATGGATATTACTACCCTTGTTAATGTAGATATCGTCATGAGACTTATACCATCCTTAACCCCATATAATCCAACATAATAAGGTATAAAATATCTAATTATGGTTATACTCGATAGAACAGAGCCAAATAGCAGAGCTCTTATAGCTTGTATATTATTTATGGCATGACTATCCACCAATGAACCTGCCATAGTATATGCCGCTATACTGTTTATCATGGCTGTTATAGATATGGTTAATTCCTCAGTGGAGAATGGTAAAAACGATATATGAGTTTTTATATATTCTGTAATATAATCAAAAATTCCTATTTTAATCAAAAAAGATGTTATAAACGATGCTATGAATATAGTTTTTATTATAGGGAGGGATATTTTTATGGTTTTGTAGATAACTGTTTTAAATAGGTTTTTATAATTATTTATCTCTTTTATAGATATGTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTGATGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 1633833-1629401 **** Predicted by CRISPRDetect 2.4 *** >NC_015636.1 Methanothermococcus okinawensis IH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1633832 30 100.0 36 .............................. TTTTTAATTTTATTATATTTTTTAAATAAAATTATA 1633766 30 96.7 37 G............................. TATAATCAATTTTAACATTAAATTTACTTACATTTAA 1633699 30 96.7 36 G............................. TATCCACAACATTGAGGGGTATCTTATATAATATGA 1633633 30 100.0 36 .............................. GTTTGTAAAATTGTTTGAGAAATCTATCTTGTTGCC 1633567 30 100.0 44 .............................. GCATATCGGGCAAAAAAGAAAGAATATAAATGATGATATATTAA 1633493 30 100.0 37 .............................. TATATGTGTTTATAAAATTATTAACCGCCTCATGTTG 1633426 30 100.0 37 .............................. CTATCATCAATAATGCCAATGTTGTTAATATAAAATG 1633359 30 100.0 35 .............................. TCATTAATAATATTTGCAATCTTTTCAGTCTGTTT 1633294 30 100.0 37 .............................. CACATAACTGAAAGAGAGGAAAAAAAACATATTATTA 1633227 30 100.0 39 .............................. TTTATACTTAAAGGTCACGGATGGGACTAATGAACAAAC 1633158 30 100.0 39 .............................. ACTAAAAAAGAGGTTGAAGAAAATGAAAATATTAAAAAA 1633089 30 100.0 37 .............................. ATAATATAATAACTACCAAAATCTAATATGCCCTCCA 1633022 30 100.0 39 .............................. TACACAGCTGTATAATATATTATAATATAGTAAAAGATA 1632953 30 100.0 36 .............................. TCTACGATTATGTAAAAGAAGATATAATAAACATGA 1632887 30 100.0 36 .............................. GTATTAACTTATTATCTACAAGCTCCTTTAATGACA 1632821 30 100.0 35 .............................. TTTCAAAAAACACATTTGTAAGTAAATATCCATCT 1632756 30 100.0 38 .............................. AGGCTCCGAGGATTAACCTCATCATTGCCATCCATCAA 1632688 30 100.0 37 .............................. TCATAGAAAGAGGATTTTAGAATATATTTGAACACGT 1632621 30 100.0 39 .............................. TAAATGAAGCGCTTAATGATTTTAGGCACAATTATTTTC 1632552 30 100.0 36 .............................. AATGGACATTATGTTATGTGGATTGTTAAAAAAGTT 1632486 30 100.0 35 .............................. TATTCGTTTTGTATTCAATAAATAGTATCTAAATA 1632421 30 100.0 37 .............................. AAATTTTATCATTGAAAGAAAAGAACTTCTTATGTCC 1632354 30 100.0 42 .............................. TTCATTAAAATCATCAAAGAAATCAAACACCTTTGAACCATT 1632282 30 100.0 42 .............................. AAAACACTTATCTCCACAAAACACCCCCACCTCATTATTGAG 1632210 30 100.0 33 .............................. CCTTCAAGGTTTCTTACTATCTTAATGAAAAAC 1632147 30 100.0 42 .............................. TATTTAGAATATATAAATATATAGAATAGGTATATCCATCTC 1632075 30 100.0 36 .............................. TTTCTTGCTCTTTTTCGTATAGCAAAGATGCAAGAA 1632009 30 100.0 36 .............................. ATATTCCACCAGAAAGTATTGAAACTAAAATATTTG 1631943 30 100.0 36 .............................. GATATAATACACACCATCCACATTTTCCCAGTATAT 1631877 30 100.0 41 .............................. TAACGCAAAAAGAATATAACTATAAAAGATGTTAAAATATG 1631806 30 100.0 37 .............................. TGTTTCCTATGTCGCATCGAGTGTCATAGAGTGTAAT 1631739 30 100.0 38 .............................. TAGGTCGTATGTTGTTTAGACTGGTGCTTTGTAAAAAA 1631671 30 100.0 39 .............................. AGTTAAAAGACTTAATAAATTCAGATATTGACTATAAAA 1631602 30 100.0 42 .............................. ATTTTTCTTAAACTTCTGTATAAATACCTTAAAGCTCTTTTT 1631530 30 100.0 38 .............................. TAGGTCGTATGTTGTTTAGACTGGTGCTTTGTAAAAAA 1631462 30 100.0 39 .............................. AGTTAAAAGACTTAATAAATTCAGATATTGACTATAAAA 1631393 30 100.0 42 .............................. ATTTTTCTTAAACTTCTGTATAAATACCTTAAAGCTCTTTTT 1631321 30 100.0 38 .............................. GATATGGTATTATCATCCCTCTCTAAAAAAATGAAAGA 1631253 30 100.0 37 .............................. TTTGATGTAAAATGTAATACGCCCCCGTTTTTACTTT 1631186 30 100.0 39 .............................. ACAAATCCCTGCTGATGAGTTTTTATCTGCTTTAAGAGA 1631117 30 100.0 37 .............................. GCATTATAAAATTCATTATTTACTATTGATATGTTAT 1631050 30 100.0 39 .............................. ATTTTTGCAATTTCTCTTACCGCAACCGTTTTATCTGTT 1630981 30 100.0 37 .............................. TTTGAATTCCATTTCCATGATGTTTTGCCCTTTTTGA 1630914 30 100.0 38 .............................. TGATTTTGCCGTATTCCTCTTTTCGTATTTCCTCACAT 1630846 30 100.0 37 .............................. GGTAGCAGCAGGACGGTATAAAATAACGAAATGGTAT 1630779 30 100.0 35 .............................. ATATATTTATATTCTTTTTTTAAGATATTAGTATA 1630714 30 100.0 36 .............................. TTCATAGTCGTCTGCAAAGTCATCAGGATTCCTAAA 1630648 30 100.0 37 .............................. TTTTGTATAGAAAAGGATTTAATCCTGTTTTATCTCT 1630581 30 100.0 37 .............................. CTGCAAATGAACTTCCTGAGTTGAAAGATACCTCTTT 1630514 30 100.0 41 .............................. GGAAATATATTCCAATAGATAGAACCCTTAACTATTAACTA 1630443 30 100.0 37 .............................. GCTATGGAACACACGGGGATTATAAAGTCATTTACAG 1630376 30 100.0 34 .............................. TTTTCCAATAACCTTATCTAAATCGATAGATAAG 1630312 30 100.0 38 .............................. CCAATACCACGAATCGGGCGAAGTCGCTTTAAAGAACA 1630244 30 100.0 38 .............................. GATAAAGAATGCATAGAATTAGGGCATTCTATAATATA 1630176 30 100.0 42 .............................. TATCTTGGAAAACCACATCCTACACTTATTAAATTATAATAA 1630104 30 100.0 37 .............................. TTTACTGTTCCACTTGTTTTATTATCGAAAATGTATG 1630037 30 100.0 37 .............................. AAAGAGAATAAGCCTCTTCCCTAACCTCATTATAATT 1629970 30 100.0 32 .............................. CTTTATATGTATTGCTTGATTATCAAAATTGA 1629908 30 100.0 38 .............................. AGCTTTCATTTTTATGCTCTGTGGCGTCTCCATAAATG 1629840 30 100.0 39 .............................. GATTGGGTGCATTATTTTTATCATATCCTGCTATTTTTA 1629771 30 100.0 37 .............................. ACTTTACCAGCAAACCCATATTTTGCTGTGGCTTCCA 1629704 30 100.0 36 .............................. AATTTACAGAAATAGAGGCCCTGATAGAAAAGGCAA 1629638 30 100.0 37 .............................. GGAGATATACAAATAATAGGAGTATCTGCGTATTTCA 1629571 30 100.0 43 .............................. TCGGTTTGCATGTTTGCATATTTTTTTCAAGGGGGTAATTTTT 1629498 30 100.0 37 .............................. CATATTGGTAGATGTCTGCCTGAGCTCCATTATTGCG 1629431 30 100.0 0 .............................. | T [1629404] ========== ====== ====== ====== ============================== ============================================ ================== 66 30 99.9 38 ATTTCCATCCATCAATGGTCTGATTTTAAC # Left flank : ATAAACTATCTGTCATTTCACTTTCTGAACTTCTCCTTAAATTGGGACTATCTGTTTTTTCTGCTATATTTGTATTTTTTACTAAATTACCCAGAAATTCATTTTCATTAATGTCTGTTCTCTTTATTATTATCTCATGGGTAGGTTGTATTATCTGCCAGTTTTTGCCGGTTATATTCTCCAGCTCTTTCTTTATTTCATAAAGAGGTTTTTCGAAGTTTTGTAGAGGAATATCTTCTATTGTAATATCAAAGATTTTCTTTTTATTATCTACGACTCTTAACACGCCAATTAAATGAGACCTATAGTTTAATATTGATTTTTTGATTTTTAGCTGATAGTTGATAAAAACAATTTCGTCTGCAGGTACTTCGAAATATCATAATTAATATTAATCCTATCGCCTTTAGAAATTAGTTCTAAATTTTGTTTCGTTCAGATTTTTCCATATGCTCCCCTTATTCTCTATCTTTTTTTATAATTATTAATCACAAATAAAT # Right flank : AGTTCAAAATTTTTCTTATTTTATGTAAAATACCTTTGCATTACCCCTATATAAACTTTTCGAATCTCGAATCACATTGATTTTTGTTATTTATATAGTTTTAAGGGTGATTTACGACGGATAATTTAAAGGTATTTAGGAATATAAAAGATATTAAATTGATATTTTTTTAAAATCTAAAAAATTTACAAGGAAGGATTAAAAATAACACAATATATAAAAAATCTCTTAAAAATCTCTATAATTCTATTTATATAAATATATTAATTATACTAAAAATTTTAGTGATTTACGACGGATAGATTAAAGGTATTTTAAAAAATAAAAATTAAATAATCAATATAATAAAAAAATAAGTAATATTTACAGGGATAACATATAATAAATAATAACTTAATATTTTTATATAATAAAAAATAAACTATACTTTACTTTAAGAGCTCCCATATTTTCTTCAACTTAACTACATCAACCTGCCCAGGTGCCGAGCTCCTACCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCATCCATCAATGGTCTGATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //