Array 1 4720-4136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAS010000026.1 Bifidobacterium longum strain MSK.5.3 NODE_26_length_19551_cov_358.692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4719 28 100.0 33 ............................ AGTTGGTGCAGGTCAGCTAGTTTTAAGAGCATC 4658 28 100.0 33 ............................ GTACCGTCGCCCCGTCCTGGTGAACGGGGTCGA 4597 28 100.0 33 ............................ GGGTTCGAACATTGTCCGGTATCTGTCGGCCGA 4536 28 100.0 33 ............................ GAAGAGTCCCGACCTTGGAGACGGTCTTGCAAG 4475 28 96.4 33 ..............T............. GTTGAGGATGACGGTGCCGTCCGGACGCGTCAA 4414 28 100.0 33 ............................ TAAACCAAGACGATGGAATCACCGACTTGGAAA 4353 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 4292 28 100.0 39 ............................ TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 4225 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 4163 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 10 28 97.9 34 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 63960-66628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAS010000004.1 Bifidobacterium longum strain MSK.5.3 NODE_4_length_197406_cov_409.275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 63960 36 100.0 28 .................................... CTCCTGGAGCTGCTACGTATTTGTTCCA 64024 36 100.0 28 .................................... GCCGCAGTTGACGGCTCGAACCTGACCT 64088 36 100.0 28 .................................... AATGAGATCGTGAAGTTCAGCAACCAGT 64152 36 100.0 28 .................................... CGTGGCTCGGCGTGTCGCCTGTGAGGCT 64216 36 100.0 28 .................................... ACCATGTAAGGAGCCGTTTCGATGGTGA 64280 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 64344 36 100.0 29 .................................... TAGACGCCATGCTCCGTGGCTCGGCGTGT 64409 36 100.0 28 .................................... CGTTCGCGTTCCTTCCGTTTTTTGGGAT 64473 36 100.0 28 .................................... AAGAAGCGCCCATTGCCCGCCAAGGAGT 64537 36 100.0 28 .................................... ATAATCGCATCGTTAGACAGTTCGTCCA 64601 36 100.0 29 .................................... CACCCCCTCGGCGGGAGTCTTGCAGACGT 64666 36 100.0 28 .................................... TTAAGCCGATTGAGGAGGAGTTGGGACC 64730 36 100.0 28 .................................... GTAGTACTCGCGTACCATCATCTCCTGA 64794 36 100.0 28 .................................... TCGCGCGTCGCCGCCGTTCTGCACCAGT 64858 36 100.0 28 .................................... AAAATCGCCGACGCGTTCGACGTGTCGC 64922 36 100.0 28 .................................... CTGAGGAAGAACCTGACCAACAGGCAGC 64986 36 100.0 28 .................................... GGAACCGTTGGACGTGTGGTGCGTGCGC 65050 36 100.0 29 .................................... AGCATTTCGGCATGGAGCCAAGGCCGTCG 65115 36 100.0 29 .................................... CCTTCAGGCCGTTGAGGAAACCGTCGATG 65180 36 100.0 28 .................................... ATATTGACGTGTTGTTGCTCGATCATCT 65244 36 100.0 28 .................................... CAGCTGGTCAGCGAGGGCATTGTGCCCA 65308 36 100.0 28 .................................... AACATTATGACGTGCCGTTGGAACCCGA 65372 36 100.0 28 .................................... CACCAGGTACGCCCTGTGGGGCGACTAC 65436 36 100.0 28 .................................... CAGTACACTGTGGGTGAGTTGCGCGAAC 65500 36 100.0 28 .................................... GCCTACTCAGGCGGTGGCCTTCGGACCC 65564 36 100.0 29 .................................... GGGCAAGACCGCGTATGTGCGCGACCACA 65629 36 100.0 28 .................................... GACCGCCAGAGAACAAGGCGGCCGAAAC 65693 36 100.0 28 .................................... AGTAAGAAATAATTGATGCAACTGTTCC 65757 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 65821 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 65885 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 65950 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 66015 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 66079 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 66143 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 66207 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 66272 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 66336 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 66401 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 66465 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 66529 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 66593 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 42 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1244-791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAS010000052.1 Bifidobacterium longum strain MSK.5.3 NODE_56_length_1253_cov_364.692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1243 28 100.0 33 ............................ GGTCGTTGGCGTGACGGATATCGCAAAAATTGA 1182 28 100.0 33 ............................ CCATTGGGATTTCGACTGGCTCGATCGCATCAT 1121 28 100.0 33 ............................ GCTTAGAGCCGGATATTGTTCGCGTCGGAATGT 1060 28 100.0 33 ............................ GGACTGGGATCCCGCGTCAAACGGTATCTTCCC 999 28 100.0 33 ............................ GGCACTCCAATGAATGAGACCGGCATCAGCATC 938 28 92.9 31 .C...............A.......... CCCTGTACCAGTTCACGATTGATACCGAATC 879 28 96.4 33 ..............T............. CTTGGAAGCGGGTGCGTGATGGCCGGCAGTCAA 818 28 92.9 0 ..........T..G.............. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : GATCAGCTT # Right flank : AAAGTCAAGCGAAATGCGAAACACGGCGTGTCACTTACCCCGCGCATGCGGGGGGGGTGGTTTCTTAAAATGTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGTATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //