Array 1 2698-5132 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUP01000466.1 Escherichia coli strain JML268 sequence466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2698 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 2758 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 2818 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 2878 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 2939 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 2999 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 3060 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 3120 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 3180 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 3240 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 3300 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 3360 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 3420 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 3480 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 3540 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 3600 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 3660 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 3720 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 3780 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 3840 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 3900 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 3960 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 4020 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 4080 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 4140 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 4201 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 4261 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 4321 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 4381 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 4441 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 4501 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 4561 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 4621 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 4681 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 4741 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 4801 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 4863 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 4923 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 4983 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 5043 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 5103 28 85.7 0 ....................A...C.CT | T,C [5123,5127] ========== ====== ====== ====== ============================ ================================== ================== 41 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14191-15040 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUP01000466.1 Escherichia coli strain JML268 sequence466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 14191 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 14251 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 14311 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 14372 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 14432 28 96.4 32 ...A........................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 14492 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 14552 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 14613 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 14673 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 14733 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 14793 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 14854 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 14914 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 15013 27 85.7 0 ...G...A...............-C... | T [15033] ========== ====== ====== ====== ============================ ======================================================================= ================== 14 28 98.7 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //