Array 1 63577-62510 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNU01000015.1 Escherichia coli strain MOD1-EC5496 MOD1-EC5496_15_length_133027_cov_76.1089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63576 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 63515 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 63454 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 63393 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 63332 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 63271 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 63210 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 63149 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 63088 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 63027 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 62966 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 62904 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 62843 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 62782 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 62721 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 62660 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 62599 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 62538 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90158-89275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNU01000015.1 Escherichia coli strain MOD1-EC5496 MOD1-EC5496_15_length_133027_cov_76.1089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90157 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 90096 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 90035 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 89974 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 89913 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 89852 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 89791 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 89730 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 89669 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 89608 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 89547 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 89486 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 89425 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 89364 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 89303 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //