Array 1 928433-928649 **** Predicted by CRISPRDetect 2.4 *** >NZ_OLMS01000003.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 928433 23 95.7 41 ........T.............. TAAATGAGATGATCCAATATTACCAGCGCGACATCGACTAT 928497 23 100.0 43 ....................... CTCCGGACGGAACTTCCACTAACAATAGTTTGATCTCCTTATA 928563 23 100.0 41 ....................... CCCGGGTGCGGCCGATTATTACGCTGAACAAATAATCTATA 928627 23 95.7 0 .....................G. | ========== ====== ====== ====== ======================= =========================================== ================== 4 23 97.8 42 AATTGTACCTAAAGGAATTGAAA # Left flank : GATATAACTTTGCATTTGGAACAAAACTGGTTTGTGCCTTCATCTGTTTTAGCGGACGTGCGACGTTTGATTATCGAAAAATTAGAACTTGTGCGTCGTATCGCTTGGCGTCGTGAGGTGTCCGGTAAACCTAAACCTCCTGTTTCTGCTAATTCTTCTATTCCTGAACATCTTACTTATTTGGCGAATGTTTCCAACAAAAAGGCAAATCTTTTTTATACACAATGCGGGGTTAAATGTATTGATCCGGCTTTCGAATTGCTTCCTCAAAAAAATGTTCCGCTGATGTTTACTAAACATTGCCTTCGGTATAGTTTGGGATATTGTCCTCATTATCAAAAGAACAAATCTCCTTATAAGGAGCCTTTTTATTTAGTCTATAATACTATGCGGTTGCGTTTGCAATTCGATTGTAAAAATTGTATGATGGTGGTATATAAAGAAGAAGAAAAATAAGTTACTTATTTCTGTTATTCTTTTGTCGTATCCGCTACATGTTT # Right flank : ATCATCCCCTAATGGAGTAGGAATTAATGTAAAATGCGTATAATTTAAATGAGACTGAGTGGAACGTTAATACTTCGCTTAGAATAATCTGATCTTTTAGAGAAGAAAAAGTAAAAAGTGCCAACCAAAGGTAGAAGTTAACTTTCGATACGTAAATGGAAACTCGTATTAAGCTTTTCATCTGTAAATTGAATTTCAGTAAAAGCTACTCTAAAGTTTACTCCTCACCTATAAAGTTTTTACAAAACCATCTCTCACCCTCTCATCAATCCTCCAATATCCTTGTTCTATAGAATGATGTAGAGATGAGAGTAACCCATTTTTTGCTCTCATCCTGATCATTTTGCTCTCATCCGCAAAAGAGTATCGAAAGGGAAAGATAAAAAAGGAACTTTTTCTCCGGAAGCTGCATGATTATGAAAAGAAGCAGTGATATTTTTGATGACCAAGTGTATTTGATGTATATTTGTAGGGACATAGAAATGCGGGCATCCCGGTGA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGTACCTAAAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 714765-714284 **** Predicted by CRISPRDetect 2.4 *** >NZ_OLMS01000002.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 714764 29 100.0 36 ............................. CCCCGACTTCTATATTTCTTCAAAATCCACACTACA 714699 29 100.0 36 ............................. ATAGTCATCCAGACGTATTCCAAGTCTCCTGCCTCC 714634 29 100.0 35 ............................. GAAGCTAAAGATGCCAGTACATCTTCTGCTGAAAA 714570 29 100.0 35 ............................. TTAAAGCCTATATACCATTCTTTCCCCGTATACAA 714506 29 100.0 35 ............................. ATTCGTTCGAGAATTTCTGTTTTGGTAGAATTTCT 714442 29 100.0 36 ............................. TTGGAAAAAATTGTAGGAAACGGAATAATAGAGGAA 714377 29 100.0 36 ............................. GGACGTAAAGGCGATCAAAGAATTGACCACCGAAGT 714312 29 93.1 0 .................T......A.... | ========== ====== ====== ====== ============================= ==================================== ================== 8 29 99.1 36 CTATAAATTGTACCTAAAGGAATTGAAAC # Left flank : AAATGTGGTGGTAGATGTATATTATTCTTGTATATGATATGGGAGAGAAGAGAGTTGCAAAAATGCTTCGTCTCTGTCGGAAGTATTTGAATTGGATTCAAAACTCCGTATTTGAAGGAGAACTGTCTGCCGTTAAATTGAAAGAACTGAAAATTCAGGCTGAGGAAATAATGGATAAAAACGAGGATAGCTTAATTATTTTTTCCAATCGTTGGGATAAGTGGATGGATCGGGAAGTGATTGGAAAAGAGCGGTCTAGCATTGATCAGTTTTTATGAAAATTGTCGATGCCGGCTTTTATTAGCAAAAAATAGACTTGTAGAGATTCGTGTTGTTTCAAAAAGTTCTTTGACATATTGAAAATCAGAAAGATAAAAAAAGTTGTCGATCCCCCACTATTTTTATATAATTGGGGGTCGACAACTTTTCAAATGAAAAATATTAGTTGAATACCACGAAAAGCCCAGTATTTTCGTAGATAATAACTATTTTTGTAACGT # Right flank : TCGTCAAAAGTTTTTTATTTCTTCTATTTTCATAATTCTTATAAACTATCTGTTTTTTGTCATCTTACCACTAGGAAGGTAGAAGTAATAGAAAGAAACTAGTATAACTATTAAACTAATAATTCTTATATATTGTATCATGAAGAAATATCAATTTTTAATTGCCTTTTTATTTTGTGTATCGTTATTATATGGAAAAGGAACACAAATAAAAGTACTCCAGATGAATATCTGGCAAGAAGGAACAATGGTAAAAGGAGGTTTTGACGGAATTATAGATGAAGTCTACCGTTTAGATCCCGACATTGTGCTATTTAGTGAAGTCCGAAATTACAACGGGAAACAATTTATTCCCAGAGTACTAGACGCTCTAAAGAAAAGAGGAAAGCAATACTACGGTGAAAGTAGCACCTTAGACGTGGGAATTTTGTCAAAATACGAAATTCAAGAACAGCATCCGAATTACCCGTTAAAGAATGATGCAGGCTCTATATTGAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATAAATTGTACCTAAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 2052835-2053123 **** Predicted by CRISPRDetect 2.4 *** >NZ_OLMS01000002.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2052835 29 100.0 37 ............................. AAGATTTCTTCAATTTGATAATTTAATCCATGTTGCC 2052901 29 100.0 36 ............................. CGGATTCGGAGGAACTTTCCGCCGATGTTCCCCAGA 2052966 29 100.0 35 ............................. TATCTCTTGCTCGTTTCTCACTATTTTCATATCTA 2053030 29 100.0 36 ............................. TGTGCCGGATGAAGATGATTTGGTGTTCCGGGTCTA 2053095 29 72.4 0 ..............A..G.....CCTATT | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 36 GATTAAATTGTACCTAATGGAATTGAGAC # Left flank : TCCCTTTATTTTTATCTTCCCCAGTGGAAAAAAGAAAAAACTAAACCCATTTCTTAAACACAATACTCCCATTCTTGACTTTCCGGCATGCTTGAAAGCTTCCGGGAAGTCAAGGATGAGAGCTATTATAAAACATACTCCATCGGAAAAATGTTCAATTAAACCACAACTATTCTTTTTTGCTCTCACCCATTCATTTTGTTTCTAGCTTTGTTACTTTAAAGTTCTGCTATGAGAGAGATACAGAATTTTTATTAAGTACTCTAAAATTCTCGATGTCTCTATACTTAATTTCCTTTTGGCTTTACCTTTATTCCATCTAACAAATAAGAGAAAATGTTTGGGATTTATTTTAAAATTCATACCTTTGACCCAATAAAGTTGTCGATCCCCCGCTATTTTCATATAATTAGACATCGACAACTTAAACAGGGGATTTTAGACTGATTTAATAATATAAGTAATTGATATTGAATTGATGATTAGTCGTTAAAGTGCGG # Right flank : TAATCCTTTATAAAATATAGTTTTTTTTAGAGAAGAAGAATACAAAAATATAAACTCCGGTTAGAAATTAATTTCTAGTATGTAAATGAAGTTTAGTATTAAGCGTTTGACTTGTACGGAAAAAAGTTTACACCACATGTAATAAAAAATGTGTAAACAAAAGAAAAGAAATCGTCAATATACGGAAGAGTTTCGTATATCTGTGGTAAAGGAATACCTATCAGGAGGTATGAGTAAATATGCCTTATGCAAAAAATATTCTATCCCCCAGCCAGTGACATTAACCACATGGATTCGTAAATTTGTAGGCGAAGAAACAAAGGAGTATCCCATGAAAAAAGAAAAGATTCCAGAATCGGAAGAGGTAAGCCGTCTCAAGCGTGAGTTAAAAGAGGCCAAACTGGCGCTTTACCAAGAGCGCATGCGTGCTGATGCGTATGATGTGATGATTGATGTAGCAGAAGAAATGTTTAAGATTCCGATCCGAAAAAAAGCTGGCA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAATTGTACCTAATGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 2203113-2202886 **** Predicted by CRISPRDetect 2.4 *** >NZ_OLMS01000002.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2203112 30 100.0 36 .............................. TCTATTCTATCGTATTATTAGCTTGCATATTAGGGT 2203046 30 100.0 35 .............................. ATACTATTATAACAAAGATTAAGGTTCTAATCCCA 2202981 30 100.0 34 .............................. AGGTAACTAATCCGTTTAGGAATAGAATCCAATT 2202917 30 83.3 0 ..................A.T...A.T..T | CC [2202892] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.8 35 GTTTAAATTGTACCTAATGGAATTGAGACA # Left flank : TAAGGTAGATGTAATCTTCATTATGGATGGATATTACATTTATTTCCTTATCAAGTACTGTTATCTTTGCCATGTTTTCATTGTTTAGAGTTATGGTTGATAAAGATCTGACTTTCTCTTTTCTCTTTCTCTTTTTTCCGGTTTAATCCGTAATGTTTGTTGTGTTATATTTGCCGGAGCATGTTAAAAGTCAATTCTTAAAAAATCAACACAGGAGACACAAAATTCTACTATAAGAGAGGTACAGAAGCTTTATTAAATACTTTAAAATTCTAAATGTCGCTATATTTAATTTCCTTTTGGCTTTATCTTTATTCTATATGACAAACAAGAGAAAATGTTTGTGATTTATTTTAAAATTCCTATCTTTGACCCAACAAAGTTGTCGATCCCCCGCTATTTTCATATAATTGGACATCGACAACATGAACAGTAAGTTTTAGAATGGTTTAGCAATCTAAGTAATTGATATTGAATTGATGGTTGGTTGTTAAAGTGCG # Right flank : CCTTCTTAGAATATAGTTTTTTAGAGAAGAAGAATACAAAAGGTATAAACTGAGATTAGAAGTTAACTTCTAGTATGTAAATGGAGTTGAGTATTAAGCGTTTTTTCTGTAAACTAATTTTCAGTAAAAGTGATCCTTCGGGTTACTCCTTACCTATAAAGTTTTTATGAAACCATCTCTCACCCTCTCATCAATTCGCTAACAGAACTCTTCTATAGAAGTATTTAGCGATGAGAGCAACCCCTTTTTTGCTCTCCCCCGATCATTTTGCTCTCACTCGCGAAAAAGCAAAAAAAGAGAATATAAGAAGTCGTGATTTTTTTCTTCGGAAGCTGAATTATTATGAAAAAAAAGCAGTGATTTTCTTGATATCCAACCGTATTTGATGTATATTTGTAGGGAGATAAAGAGGCGGACACCCGGGTAATTTTAACAGAGAGACCCGGGTGTCCGCTCTTTTTACACCCGGGTGTAAGAAGTGTCAACATCCGGGTGTAAGG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTGTACCTAATGGAATTGAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 2206252-2205938 **** Predicted by CRISPRDetect 2.4 *** >NZ_OLMS01000002.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 2206251 35 100.0 33 ................................... AATTCATCAGTTTCTGCGCTTCTTCACAGATTT 2206183 35 100.0 35 ................................... ACTAAAGCTATAAATAAAAACACTGTTGCAATTAT 2206113 35 100.0 35 ................................... CCATGGCTTGGTGTTTGTTAAATTCCGCTATTGAC 2206043 35 100.0 36 ................................... AGAACAGAATAAGTAAATATCATTCAAACAACAATA 2205972 35 94.3 0 .......................C..........A | ========== ====== ====== ====== =================================== ==================================== ================== 5 35 98.9 35 ATTCTATTCTATAACTGCATTAGTGGTATTGAGAC # Left flank : TTTTACGAAGATAGTGTATCAGCCTAAGCGAAAACAATCGGTGGAAGTGGTAACAGTAGTGTAAAACATTTGCGAAAAAATAGAAATTACTAAAAACTTAGTATCGAGGAGTTATCCCGGGTTCTAAATATTATAATATGGATTAAAAAATCGTGAATGTGTTTTGGTAAGAATTTCTTTAAAACATTTGCGAAGTTTTTTATTTATTCATAAGTTGTTCTTTGACGTATTGTATTGTGTATTAACCTTATAGAAAAATATGCATTTTGTTGTTTTTCGCAAATCTCTTTTGTGTATAAAAGTAGTTTTATATTTGCGAAGTTTTTGTTTTAATTAATAGCCTATAAATCAATTGTTCATGAAAAATAAATTAATAAAATTGTTTGTTTTGATGATTTAAAACGAATATATTTGCGAAAATATTAGAATATTGTTGGATATTAGGAATTTAATAGAAGATTATAAAACTGGCTTTTTAGAAAGTTTCTGATTATTAAGGG # Right flank : TATGAATGATCACGTATGAATAGAGCTCTTACGGACGATGTACAAAAGAAACAAGTCCTACCGGACAATATGTAACCTATACTTATAATGTGATAAACGGGCGATTGGATTCGCAGAAGGATGATAAAAACCGGCAAACCTCATACATGTATGACGAATTCGGGCGGAGTAAGAAAACGACATATGCGGACGGCAGATGGGAAGAAGGCAGTTTAAATTGGGTAAGCGCTCCGAGTACGGCTTCATATTGCGTAACACAAACGTCGTCTACCGACCCTACGGTAAAAACTTACTTCGATGCGTTAGATAGAGTTGTCAGAAAAAGTTAGATGGGAATCAGCGGAAAAGAAATTTTAATAGACCTGGTATATGCCTCTTATGGAAGGGTACAAAAAGAATCTCTTCCTTTTTACGGTTCGTCAGCTTCTGCATGGAAGAATACCAGTTATGATACTTATGACAGACCGTTAGGAATAACTGAAAGTTCAGGTAGAAAAAAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTATTCTATAACTGCATTAGTGGTATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //