Array 1 20267-22154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDD010000029.1 Pseudomonas aeruginosa strain 44712 NODE_29_length_67971_cov_27.2694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20267 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 20327 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 20387 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 20447 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 20507 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 20567 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 20627 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 20687 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 20747 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 20807 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 20867 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 20927 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 20987 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 21047 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 21107 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 21167 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 21227 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 21287 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 21347 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 21407 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 21467 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 21527 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 21587 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 21647 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 21707 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 21767 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 21827 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 21887 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 21947 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 22007 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 22067 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 22127 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31427-30679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDD010000029.1 Pseudomonas aeruginosa strain 44712 NODE_29_length_67971_cov_27.2694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31426 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 31366 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 31306 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 31246 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 31186 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 31126 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 31066 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 31006 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 30946 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 30886 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 30826 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 30766 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 30706 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //