Array 1 76624-74674 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXN01000038.1 Neisseria meningitidis 93004 NM93004.contig.37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 76623 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 76557 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 76491 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 76425 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 76359 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 76293 36 100.0 30 .................................... CTTTTCAATGTTAACTATTTTGCAAAGAAT 76227 36 100.0 30 .................................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 76161 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 76095 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 76029 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 75963 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 75897 36 100.0 30 .................................... AAACTCGATGTGTCTGACACGCCTCGCATT 75831 36 100.0 30 .................................... CAGCTTGCTTGGCACCAACGCCAAGCAAAT 75765 36 100.0 30 .................................... AAACTCGATGTGTCTGACACGCCTCGCATT 75699 36 100.0 30 .................................... GCAGATGCAAGGCAATGGCGCGAAGAGGTG 75633 36 100.0 30 .................................... GCAGCCCGCGCGCCATCTCGTTCAGCATGA 75567 36 100.0 30 .................................... AAGTATCTTGATGAAACGCTTGGAGCGGGT 75501 36 100.0 30 .................................... TCTGAAGTTTCTATTATCAACGAACACTTG 75435 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTCCAAGAG 75369 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTCCAAGAG 75303 36 100.0 30 .................................... TTATTCGGCAGGCGTTTGGTTTGGTGTGTT 75237 36 100.0 30 .................................... TTTCCGCCTCCCGTTTCTTCCCCCATTCGA 75171 36 100.0 30 .................................... ACAACACACATCCGATACTGGTTATCGACA 75105 36 100.0 30 .................................... CATGCGTCGATGCTGATTCCGGTGCAACTT 75039 36 100.0 30 .................................... AATATGGCGGCTTTTTTGAAAGGTTTAAAA 74973 36 100.0 30 .................................... CGAATATATCAAGTTGGCTCGGATGCTGAG 74907 36 100.0 30 .................................... TCCGCCCGCTTACTTGCGGCTGACGGGAAA 74841 36 100.0 30 .................................... AGATTGCTTCACAAGCCAAGCGTTCGTCTC 74775 36 100.0 30 .................................... TCCCCCCCTTCATCATCGCACCGACCTGCC 74709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAACCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGGAAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //