Array 1 78217-80933 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNLB01000003.1 Bifidobacterium pseudocatenulatum strain 1E Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 78217 33 100.0 34 ................................. ATCTTCGTGGTCTGCTTCAGGCCGGTATCACCGC 78284 33 100.0 33 ................................. TTGACGGCCTCGCCCGCGGCGTGCACGCCGGTC 78350 33 100.0 36 ................................. GACTAGAAGGATCTAAAAAGGATCGTGTAGTTGCGG 78419 33 100.0 36 ................................. ACCGCCATAAATGTCGGGAAATTGGTGATGCCGAAG 78488 33 100.0 33 ................................. ATGACGCGCAAGGTAAATTCCGGCGTGGAGGTG 78554 33 100.0 33 ................................. AACCTTGTATTCGATGCCGACCGGTTGGAAGGA 78620 33 100.0 36 ................................. GTCCCAGCAGAAGAAGAAGTCTTCGGTGGTCAGTAC 78689 33 100.0 33 ................................. TCGTCGCATGATATAATTTTGATGGAAACATTA 78755 33 100.0 35 ................................. GCCGCGGGCGAGTGGAAATGGTATTACGACAAATT 78823 33 100.0 34 ................................. AAATATTCGTGTTCGTGATGCATTTCGTGAAGAT 78890 33 100.0 32 ................................. CGCCGCCATCGTGGCCGGTCATGCGCGGAATC 78955 33 100.0 34 ................................. CCTGATCGTCCACCGGCTCAATGCTGAAAAACTT 79022 33 100.0 33 ................................. TGTTCGTTTGTTGACGAATGGGGAGCATTGAAG 79088 33 100.0 34 ................................. ACGATGCCGGAAGAGACGTTAAAATTCTTGTTTT 79155 33 100.0 34 ................................. CAAATCTCATGACCTTGTCTCAGGAAGAGCGTCG 79222 33 100.0 34 ................................. ATAGGAATTGTCTGCGAACATGTTGAAGGCTTCG 79289 33 100.0 35 ................................. TACGGGTGCGAGATTGTGCAGGGACTCGGCTCGTA 79357 33 100.0 36 ................................. TGTCAAACCAAACCTAAGAACCACCAGATATAACAG 79426 33 100.0 34 ................................. CGCGGCCTGACAATCCTGTTCCCATCGCGATCAT 79493 33 100.0 36 ................................. ACCACTCAGGAGTTCATGGGTCTTAATGACGAAATC 79562 33 100.0 34 ................................. CACACGCCAACCGGATAATCGCCACTCATAACAT 79629 33 100.0 35 ................................. GTATCGAGTTTCACGCGTAGACCCATGTCATGCGG 79697 33 100.0 33 ................................. GAGAACTTGGCCTGATGGATGATCGCCTTGTCC 79763 33 100.0 35 ................................. TTCGGATTGCGTGTTTGATTGCGCGTGGGGGTCGG 79831 33 100.0 34 ................................. ACGGTCATCCGCACCGGCATGATGATGCTGGTCA 79898 33 100.0 34 ................................. CATCGCTGGGTTACGGAATCCCACAAAGCCCCCT 79965 33 100.0 33 ................................. AGGGACGCCAAAGAAGATGAATACACCTATCCG 80031 33 100.0 34 ................................. AAGCGAGGACAAGGCGATCATCCACCAGGCCAAG 80098 33 100.0 34 ................................. AATACGACCAAGTTCACCAGCTCATTACCGGTCT 80165 33 100.0 33 ................................. ACTATCCAATCCTTTCAAAAGTGAAACAACCAA 80231 33 100.0 37 ................................. GTGGATGGCATGGGACAGCGCGGGTACGAAACGGCTA 80301 33 100.0 33 ................................. TTTCCAGTGACGCGTCACTATCCCAACCGGCGA 80367 33 100.0 32 ................................. TGCTGGGACGAAATGCTCGAAACGACGAACTC 80432 33 100.0 33 ................................. GGGCACACAGTCAAACGAATCCACGGCAAACAG 80498 33 100.0 35 ................................. CAAAATTGACGTGAGTTCGATAATTGAGATGCCGC 80566 33 100.0 35 ................................. TACGCCCTCGATACGATTCAAATGGGTTTCCAAAG 80634 33 100.0 35 ................................. CCTAACGTCACCCCGTTTTTGGCGGATAAGATCAG 80702 33 100.0 34 ................................. CGCGCGTTGGGCCAAACCCGACGAGATGGCACCG 80769 33 100.0 34 ................................. TGGCTGTACGACACGATCGACGTGACCGCGCAGA 80836 33 100.0 32 ................................. TTGAGCATGCGGAGCATGACGTTGGCGGTCGT 80901 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAACGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //