Array 1 693043-694535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXKU010000068.1 Salmonella enterica strain LSP 295/15 NODE_46_length_824600_cov_25.934547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 693043 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 693104 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 693165 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 693226 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 693287 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 693348 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 693409 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 693470 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 693531 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 693592 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 693653 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 693714 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 693775 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 693836 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 693897 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 693958 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 694020 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 694081 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 694142 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 694203 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 694264 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 694325 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 694386 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 694447 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 694508 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 710667-712631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXKU010000068.1 Salmonella enterica strain LSP 295/15 NODE_46_length_824600_cov_25.934547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 710667 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 710728 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 710789 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 710850 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 710911 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 710972 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 711033 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 711095 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 711156 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 711217 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 711278 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 711339 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 711400 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 711461 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 711522 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 711583 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 711644 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 711705 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 711766 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 711827 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 711888 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 711950 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 712053 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 712114 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 712175 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 712236 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 712297 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 712358 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 712419 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 712480 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 712541 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 712602 29 96.6 0 A............................ | A [712628] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //