Array 1 164-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATT01000259.1 Delftia tsuruhatensis strain CM13 contig_269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 163 32 100.0 33 ................................ GCTCCTGAGCCAGATCGCAGGAAAAGTGGTTGC 98 32 100.0 34 ................................ CCTATCTGTGATGGTCCTGGCCTTTTATGTCGCC 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CGCGTCATACGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCTACTTAGGGAGCCTCAAGGGATGGGTCAACCCAGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCGTTTGCAGCCTGTGACTCCAGGCGCGAGCACATGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCACCCCTGGCTGATGCCGATGATCTTGTCCTGCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACGCAGCCAGCACGGCCGCCAGCGTGACAATGGCACCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 720-358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATT01000259.1 Delftia tsuruhatensis strain CM13 contig_269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 719 32 100.0 34 ................................ TTGATTTTGAGGAGTGCTTCGTCGCGCGTCATAC 653 32 100.0 34 ................................ CTACTTAGGGAGCCTCAAGGGATGGGTCAACCCA 587 32 100.0 34 ................................ CGTTTGCAGCCTGTGACTCCAGGCGCGAGCACAT 521 32 100.0 33 ................................ CACCCCTGGCTGATGCCGATGATCTTGTCCTGC 456 32 100.0 35 ................................ GCAGCCAGCACGGCCGCCAGCGTGACAATGGCACC 389 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACATCCTGCGCCTCTCGATCGCGCTGCCTCTGCTCAGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACATCTGCACACAGCCCGGCGAAATGCCCTGCCAGCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACTGCGCAGTGCAGTGCGGCGCGACGGGCTTTACCGCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACAACGCGACCCAGATACACACGCGCCACAACATGCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACGCTCCTGAGCCAGATCGCAGGAAAAGTGGTTGCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCCTATCTGTGATGGTCCTGGCCTTTTATGTCGCCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1064-833 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATT01000259.1 Delftia tsuruhatensis strain CM13 contig_269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1063 32 100.0 34 ................................ ATCTGCACACAGCCCGGCGAAATGCCCTGCCAGC 997 32 100.0 35 ................................ TGCGCAGTGCAGTGCGGCGCGACGGGCTTTACCGC 930 32 100.0 34 ................................ AACGCGACCCAGATACACACGCGCCACAACATGC 864 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAACCTCCGCGCGAACCCCAAGTGACCGCCACCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGTGCGAGGGATTGGCTGAACGCCGATTCCGCGGCATGACAGCGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCCGCGCCCCGTGCGGGCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACATCCTGCGCCTCTCGATCGCGCTGCCTCTGCTCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACTTGATTTTGAGGAGTGCTTCGTCGCGCGTCATACGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCTACTTAGGGAGCCTCAAGGGATGGGTCAACCCAGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCGTTTGCAGCCTGTGACTCCAGGCGCGAGCACATGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCACCCCTGGCTGATGCCGATGATCTTGTCCTGCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACGCAGCCAGCACGGCCGCCAGCGTGACAATGGCACCGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14958-11040 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATT01000253.1 Delftia tsuruhatensis strain CM13 contig_263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14957 28 100.0 32 ............................ GATTTGGACTCGTCGCAGGACTTCAGCTCGCA 14897 28 100.0 32 ............................ AGGACAAGGGCCACGCCGTCACGGTGTACCCC 14837 28 100.0 32 ............................ TTTGCCACGGGCGGCGACCTCGACCACCTGGC 14777 28 100.0 32 ............................ ATCTCGCGCGACGACATCAACCTGAGCACCGC 14717 28 100.0 32 ............................ TGCCACGCAATGGCCGCACAGCCGCTGGCGCT 14657 28 100.0 32 ............................ GCCGTGTGTTCGTTGTCGCAAGCGCTCGAAAC 14597 28 100.0 32 ............................ TCGTCAAAGTATTGAGAGACACGGCCCTTACT 14537 28 100.0 32 ............................ TTCATCGACGTGCAGATGCAGGAGGACCAGGC 14477 28 100.0 32 ............................ TCAAAGAGCGAAGAACTCTTCTCAACATCGAC 14417 28 100.0 32 ............................ CAAGACGTTCAAGCTGCGCTACCTGCCTGGCG 14357 28 100.0 32 ............................ TTAGCCTTGTCAATCAAGCCGCGCACCCATTC 14297 28 96.4 32 ........A................... AAGACGCTTCGCAAGCTCCTTGGTGTCGACCT 14237 28 100.0 33 ............................ GCAGTCAGCATCGGGTTCCGAGTGCTGGATGGC 14176 28 100.0 32 ............................ GTCATGCTGAGCGATGCGCCGCCCACGTTGAG 14116 28 100.0 32 ............................ AGTTCGGCGCGCACCAGGCGCATCTTGGTCTC 14056 28 100.0 33 ............................ CTGGCCCATGTCGCCGCCTACGCTCAGCACCAG 13995 28 100.0 32 ............................ GACGCCTCGGCCCTGGACACCATCCTCAACGA 13935 28 100.0 32 ............................ TGGGCGGCCTCCACCGGCCCGGGCTCGTCATC 13875 28 100.0 32 ............................ AAGAAGGTCGGCAAGTCCGCCGAGCACGTCCA 13815 28 100.0 32 ............................ GGCATGGCAATAGATGCTGCGGCGGCCCAGGC 13755 28 100.0 32 ............................ CACCCCTCATCGCGCGAGACCTGCCCGCCCAG 13695 28 100.0 32 ............................ ATCCCCCGACCTGATGACGTGACCCCTCAAAC 13635 28 100.0 32 ............................ TTTGAGGACCAACGCCACTTCATCGGTTTGCT 13575 28 100.0 32 ............................ TGTCCTGCAGCGCCTGCAGTGCGGCTGATGCA 13515 28 100.0 32 ............................ TGATGGCCGCAGCACCTCAGATGCTCGCTGCC 13455 28 100.0 32 ............................ TTCAACCCCGACCCCGATGCCCGCTACCTGCG 13395 28 100.0 32 ............................ GGCAGAGATCTACCGGAACGTGTTGTTGGATG 13335 28 100.0 32 ............................ TTCAAGGTATCGCGTGTCTGTGTGCTCATGAG 13275 28 100.0 32 ............................ TGTTGTCCGGGTGCTCCTCCTTCACGAACGCG 13215 28 100.0 32 ............................ TGCGGCTACGACAGCACAACGAACATGACAGC 13155 28 100.0 32 ............................ TGAAAAGCTAAACCCTCCGGGAGGGGCGGGTT 13095 28 100.0 32 ............................ TGTGGAAACGCATCTTCCACGAGGAAGGTCGT 13035 28 100.0 32 ............................ TATTCGTGTTTCAAGGAGAGATAGATGCCTGA 12975 28 100.0 32 ............................ CTTGTCTATCCCTGAGCGTTCTGGCTGCTCAG 12915 28 100.0 32 ............................ GTCCACGCCTGCGGGTCAAGCAGCAAGCCACC 12855 28 100.0 32 ............................ CTCAGGGCGTGGTGCCCATGGAGTTCATCGGC 12795 28 100.0 32 ............................ GCCGTGTGTTCGTTGTCGCAAGCGCTCGAAAC 12735 28 100.0 32 ............................ AACGGGAGCGATTTGTAAGACGCGCAAATCTC 12675 28 100.0 32 ............................ TGCCCGCTGCTGCAGCGCGCAGGCCACGTCAT 12615 28 100.0 32 ............................ AGCGAGCCGCTCCTTGTCCCCTCTATTCACAA 12555 28 100.0 32 ............................ TCGGCCAGCTCCAGGGCCAGCCATCCCGAGCG 12495 28 100.0 33 ............................ CAACGGGATCAACCCCGACCACGAATCTGCCCC 12434 28 100.0 32 ............................ TGCCCGTGCCGGCGTACAAGCTCGGCGGCCAG 12374 28 100.0 32 ............................ GTTGCGGCGCCTTCGGTTTTTCAACACAGGAG 12314 28 100.0 32 ............................ TGTGATTGCCACCAGATCCGCGGCTTCGGCAT 12254 28 100.0 33 ............................ CAGGTGGTGCACGGCAGTTTCGTGGGCGCTGCC 12193 28 100.0 32 ............................ ATCAGATCACCCTGAACAGCGTGTCGGCCCGG 12133 28 100.0 32 ............................ GGCTGCGCTGATGCCGGCGCACAGGAGCCCAC 12073 28 100.0 32 ............................ TTCAATCACTCTCAGTGTGGGGCGCGTTTCGG 12013 28 96.4 32 .................A.......... AGCGACTCGGGCGTGAACTTGGTCGGGTCGAT 11953 28 100.0 32 ............................ AGTCCGCTGGCGGCTCGGCGCCGTGGAAGGTG 11893 28 100.0 32 ............................ TGCACATCAACCCGGGCCGCGAAGTCAGCAAC 11833 28 100.0 18 ............................ TGTCGGGACGGCCGAGCA Deletion [11788] 11787 28 64.3 32 .CG.AT.CGT..GCG............. ATCGACGGCACAGTCGTATCGATAGCGCCGCC 11727 28 100.0 32 ............................ TTGCGCACGGCCACGCCGAAGAAGTCCTCGCA 11667 28 100.0 32 ............................ CAGCGCCTCGCGGAGCCGGGGGGTGTCCACCT 11607 28 100.0 32 ............................ TTCTTCAGCAGTGCTGTGATTGCTTCCTGTGC 11547 28 100.0 32 ............................ TTGGAGCAGACAAATGATGTGGCTCGACTCAC 11487 28 100.0 32 ............................ CAGTCAATCTCTAGAGCGGATGCCAGCCAGCA 11427 28 100.0 32 ............................ ATGACATACCGCAACCGTGACCTCATCCGTGA 11367 28 96.4 32 ............G............... TGGGCCGTGTAGTGCGTAGGCATTTGGTCCGT 11307 28 96.4 32 ............G............... ATCCCAGGTGCGGCCATCGAGCTGGCGGCCCG 11247 28 96.4 32 ............G............... AAGCAAATGCAAGGTGTAGGCCGGTTTTCTTT 11187 28 92.9 32 ............G.........T..... AATGGCGCGGAGAATCAGCAGGCCATCAGCTG 11127 28 96.4 32 ............G............... TCCCCAAAGATTACCGATCTGGCCTGCGAGTT 11067 28 96.4 0 ........A................... | ========== ====== ====== ====== ============================ ================================= ================== 66 28 99.0 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTACCAGAGGGCGCCGTGCCCTGCCTGGTGCAGCGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGACGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGAGCCTTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTATTTGCGGGTTTGGGGGGGAAGTTCTTTAAAAATCAATGGATTGGGAGGTTTTTTGTCTA # Right flank : GCACGCACCCCCTCTCTTGGCTAGCCAGAGGCAGATGCGCGACTACGCGGTGCCCAATGCGATCCGGTTAAAGGCCGTGACGGCAATGAGCGAACAGACCGGCGCTCTCACGGAGCCTGCTGGTGCCACGCGGCAGCAGGGCGCCGCGCCTAATTCACCCGGCTTTCCTCCACGTGCTCCACGAAGGAGGGCGCTTCATTGAAAAGTTGCACGAGCTGCGCCAGGCGCAGGCCATAGGCGCATTGGGGCCGGCTGAACGCCTGGTCGGCCAGGACGATGGCGGCGCGGGCGAGGAACCAGGCGTTGTCAAACTTCCATGCCGCGTCGAAGTGGGTGAGCTTCATCTGCCGGATGTGGTTCAGGGCCAGTTCCGTGGCCATGTCCACGTCGGCGTCTTCGTCAACCCAGTCCATGTCTGCGCAGCGCTGGTCGATCAGGGCGGCCAGCTCGGTTTCTGCGCGGTCTATGGACAGGGCAATCATCTGCTGCATGCTGGGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATT01000593.1 Delftia tsuruhatensis strain CM13 contig_654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 51 32 100.0 33 ................................ TGCTGGTCGCTGGGCTTCAGACCCAGAGCCTTG 116 32 100.0 33 ................................ GACCCAGCTCCACGCTGTACCCGTGCAGCCCCT 181 32 93.8 0 ...............AC............... | ========== ====== ====== ====== ================================ ================================= ================== 3 32 97.9 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GCGCGTGGATTGAAACACGGCGTGCTCCACAAAGCCCACCCCGCCCTCGCG # Right flank : CCCCTGCCACCACAGCAAGCGCCACATGCATTTGAAACGAATCGCCTGACTCACTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCCGCATGCCCATCGATCCGCCGGATATAGGGAGATGTGAGCACAGCCAGGGCATGGCCATCGGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCTTGTGACCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAGTTGTGCCTCGGGCAGATGTACCTCGCCTTCCAGCGGCGTGTGCTCGGCCAGCATCTGCGCGCGGCGTTCGGGTGTCTGGCAGGCCAGCAGCACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTC # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 305-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATT01000594.1 Delftia tsuruhatensis strain CM13 contig_655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 305 32 100.0 33 ................................ TCGTAACCCATGGCGGACTCCTTAGATGCTTGC 370 32 100.0 34 ................................ TGATTCCGAAGTGGGGGCTTCTTCCGGCGGGAAG 436 32 100.0 33 ................................ GGGTCACGCACCCAATCGCGAAAGACCTGCAGC 501 32 100.0 32 ................................ TCGTAGACGCACAGCGTCTTGCCGTTCTTGAG 565 32 100.0 33 ................................ GCGGACATGGCGCCGACTATCACGCGCATCGAT 630 32 100.0 34 ................................ ATTGCAGGAGTGCACACAGCATGAGCGCCCGATG 696 32 100.0 34 ................................ GTTTAAGCGATCCATAGCTTCCATAAGGTGGCTA 762 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ================================== ================== 8 32 99.6 33 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAACCAAAGTGAACTATGAATAAATTAGGCCGGCCTGGTCGCGCCCCGTGCGGGCGCGTGGATTGAAACACCCCTCGCCGCGCAACGTGCCCGTCGACAAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTGGTCGCTGTCGGCCCGAGACAAGGAGCTTGCG # Right flank : CATGGCCATCAAGCGCGAAATGACGGGTTCTGGCAATGGCTGGCAGCCCGATGCCTGCATGTCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACGCAACTGATTCAAATTGTCAAATTTGTTCCCGGATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTTGCCAGGAACGGCCTGGTCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //