Array 1 39659-39031 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 39658 37 100.0 38 ..................................... CCCCTGCGGTTCGCGCGGCGGCGAGCGTCCCGGTTGGC 39583 37 100.0 36 ..................................... CCTCCAGGTAGCCCTTGGCGAGCAGCGACAGCTCCC 39510 37 100.0 37 ..................................... CATGCCGGTAATCGTCTCGCGATTCACGACGCGGCTC 39436 37 100.0 37 ..................................... GCGTAAATGGCGGTGACAACGATCAGGGCGATGATGA 39362 37 100.0 37 ..................................... GCACGGGTGGCGGCCTGTGCCTTGGTGAAGCACTCGA 39288 37 100.0 37 ..................................... ACGCCCAGTACGAGGCGGAAGTGCACGCTATGTATTC 39214 37 100.0 37 ..................................... ATGCGTAAGTGGTTTTGGGTAATCCAAGGGGGTCCTC 39140 37 97.3 36 ....A................................ CCGTCTTCCAAATAATCGGACGAGTTTACGACGTCG 39067 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.7 37 GTCAGGAAGCACCTCGCACCTCAAGGTGCATTAAGAC # Left flank : GGTGCATTTTGTTACGCCGGTTTGCGGTCTGCTGCGCCGCTCAGTCGTCTGCTGTATGCCTCGGAGGCCTTCAGCAGAGCGTTAACTGGCGTTGTTAACGGTGAGGTGGCGTGGGAGTCGCCCGGCTGGGTGAAGGTGTCGACGATGGTCTGCGGCGGGAGCGGCGGTGCGGCGGGGACGTCTGGAGGTGGCGAGAGCGGCGGTTGCGGGTGTGGTGTGTGGGGTTGTTGGGACGTATGGGGATGTTGGGGCGCTCGCCGGATGGTCACGATTCGGTCTACGGTACAAAGATTGGTACGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTGGAGGGCTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGG # Right flank : TTTGTCAGGCATGGTCTCGGCGTCGAGGTTGTAGGGCGCTTCGCGTTCGAGGGTGTGGATGAAGCCGGGAGTCGGTTCGCCCGCGTGCTTAGCGCTGACATCGTCTACTACACCGGTTAGGTGTTTGCTTAAGGGTTCTGGGCCCTCCGGCGGAGGTCTAACGACGTAGCAGACGCCGAAGGGGCGCAGCAGAGGCCGAAGGGGCGTACCCAATGATCGGGCCCTGGCCTCAATCCCACTCGCTCTACGTCCGCGACGCCGCCCCACCTCGGATGCTCGCACCGCCAACCTCCATGCCCCCTGCGAAGAAGCGGTTCATCGTCGGGCATACAGGCTCCTCGCGCTCGGGGACGTGGCGGGCCGGGAGTGGTGGCTGGCCGGGTGGTGGTGGGCGCGCGTACCCCAGTGGCGCACTACGCGGCGCGATGGACGGGAGTTGGGCCGGGGTGTCCGCTGAACCACGGCGGGCCAGGCACGATAGCTCCTGCGTTCGGGTCAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 498082-498925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 498082 37 100.0 35 ..................................... GAGGAACTCGACCTCACGTGGCTTGAGGTTTAGGC 498154 37 100.0 35 ..................................... CGGCGGATGAAGGCCTCGACGGGGATCGCTTGCGA 498226 37 100.0 35 ..................................... GAGGCGGCGAGCACGTCGTCGATGCCGATGCGCTC 498298 37 100.0 37 ..................................... CATCATCGTAGATGCGGGCGACCTGGTCGAAGCCCTC 498372 37 100.0 35 ..................................... GTTCACCTTGTTCCAGTAGATGGGCATGATCGCTA 498444 37 100.0 38 ..................................... CCACCTTCTCCCGGAGAGTCTCTCCCACATAGCGGCGG 498519 37 100.0 36 ..................................... CGGAGGCGCGGCGCGGTCAAGTCGGCGGATTCGGAT 498592 37 100.0 36 ..................................... TTCACATGCATCAACCGCCGCATTGGTGATTGTGAT 498665 37 100.0 37 ..................................... TCTGGCGGATGGCGGACTCGATGCGATCAATTGTAAC 498739 37 100.0 37 ..................................... GCCGGCCAGCCCAGGACAACAGCGCTCCCGTCATCAA 498813 37 94.6 39 ...........T.........C............... GCAACCGGGATTGGGCCGGCGTAGTGGTTATCGTCGCCT 498889 37 89.2 0 .....................C..........C..GT | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 98.6 36 GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Left flank : TGTGTGCTGCGGCGGTACGACCAGGTGTTCCGCAACGGGAACATCTTGGCACCGATTGCGCCGGTGCGGGGCGGTGTTGGAAGGGGCGGTGTCTGAGTAGAAGGTGCAATTGCGTGGGGCGGATATTGGTTGGCGGCTGGTATTTGTCACCCGGAGTTTGAGGGAGTCGCGGGTGGGGTAGGTGCGCTGGGGAGCGGGGGCGGTTGCGGGTGTGGTGTGTGGTGCGGTTGGGATGTGTGGGGTTGGTGTGGTGCTCGCCAGATGGTCACAATTCGGTCTACGGTACAAAGATTGGTGCATTTTGATCCTGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGG # Right flank : TCCTCGGGGAGGGTGACCTGTGCGACGGACGCCGTGGGCATGGTGTCAAAATCGATGACAAACGCCTCCCACACGCGCCAACCCTGATCCCAAGACCGCATGATTCCAGCGATTTGTCCGCAGTTGACGACGTCGCCAGCCTCGTTTGTCATAGATCCGGACACCCTCGGCCGCTGCCCGGCGGAATCAATGGCAACGGCGAGCCGCCGTCGTACCGCCCGAACGCCCAACCAACTCGCGTTGGCGGCGCTACCACCAGTGTGGGTTGGGCCACCGCTCAACGAAGAGACAAAGGCAATGGACTCAGACTCGGATACACCGCCATCTTCGTCTCACGGTGACGCGCGCTCGTCGGAGGAATCAGCACGCACCGCCGGCGGCAGGCTCCCAGACAGCACCATCGCCTACGTGTGTAGCCTTTATCCCGAATCCGGACACTTTTCAGTCCTCTGCCCACCGGGATGTGCGGCAGCGATTGCCTCTGCCGGTCGAAGTACCCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 521933-523353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 521933 37 100.0 37 ..................................... CGGCGACGGTCATGGGGTACCTCTTTCTCGGGTGGTG 522007 37 100.0 37 ..................................... CGACAGCGACTCGCCACAGGCGACGATGATGACTGCG 522081 37 100.0 35 ..................................... AGGTCCTTCCGGCGCGAGTCTCATAGCAGAGGAAG 522153 37 100.0 36 ..................................... CTGAGCGTCGATGGCGCTCCGGGCCGCCAGGCGCTC 522226 37 100.0 35 ..................................... GCCCCGGAAAGAAATTCGAACCCCTCAGGCATAGG 522298 37 100.0 36 ..................................... TGTGCGACCGCCGCGTGCCGTGTCCGCCTCAAGCTG 522371 37 100.0 36 ..................................... CCCAATTCAAGTCCAACCCGTACGTCGGAATGTCGT 522444 37 100.0 36 ..................................... TGGTAGTCGACCGCGACCAGGTCGCCGGTGTGCATA 522517 37 100.0 37 ..................................... GTAGCGCCGTCGCTCCGCGTCTCTGCGTTCAACACAC 522591 37 100.0 36 ..................................... TCCACTGGTGGAAGTACCCGGTGATGTACAGCGTGT 522664 37 100.0 37 ..................................... ACATGGTGGGTTCTCCTTTGGCGAGAGCGTTCTTCTT 522738 37 97.3 36 .................................G... CTCGGCGGTGGTGTCGTAGTGGAGCATGGATTGGTC 522811 37 100.0 38 ..................................... TTGATCGGCAGTACCTGCATCTCGGAGACCAGTCTGTC 522886 37 100.0 36 ..................................... TTCTCGGCCTGGTACTGCACGCACCGCGTGGCAGCA 522959 37 100.0 35 ..................................... AGCCAGTCGATGGGGGTGATGCCGAGCCCGTACCC 523031 37 100.0 35 ..................................... TCACCATGCAGAAGATGCTGAGGATGTTCATCAGC 523103 37 100.0 32 ..................................... CGTTCTTATCGGTCTTGGTGCGCATGGTTGGT 523172 37 100.0 35 ..................................... TGCCGGTGAACTCGGTCGTGGTCATTGGGTTGCTC 523244 37 97.3 36 .......G............................. GGTGAGCAGCGCTGATGAGGTCATGGAGCAGGTCCT 523317 37 97.3 0 .....................C............... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 99.6 36 GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Left flank : GCGGTGCTAGGAACGAGAACGAAGGCTGTGGCGAGAGTAAGGACGACTTCGGCGCCCTGGATCTCAGCGCGTCCTGGTCTGCCGAGTTCGCGCAATTGCTGCGGGACATTGAGGGATGATCGTAGGTGCGGAACGACCGCGCGGTGCTGGTGGTCGGTGCGCGAGACCGGCTGTCTTGACGGCGGAGGGACCTGGAAGGAGGTGTGACGCGTGTGCAGCCTGGTTCTTATGTGACACATGTGGCTGGTGTGACACCTGCCAGGAGGTCACGATTCGGTCTACGGTACAAAGATTGGTACGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTTGGATGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGG # Right flank : CGGCTTCGGCGGCATCATCTGCTGAGCATTTCCTGGCTCTTCGTGCGTGGGGCGTGGAGGGTTGCGTGTCGCAGGGTGAGGAACCCGGTGAGCCGTGGCGGTTCATTGCGCCGGAATTGACTGCCGCTATCCCCGGGACCGGAAGCGGGGGCTGTCTACTACGCCACTTCGGGGTTAACAACGCCGGTTAACGTTCTGCTGAAGGGCTCCGAGGTATACAGCAGAGCGTTAAGTAGCGTTGTTAACGTCCAACCGGCGTAGCAGACTGTCTCGGCCTGGCGCGCCAGGAGACTGCGCCTAGAGGCTTGACCGGGTACGTCCACCCGCGTAACAGTTGCAGCCCGAACCGCCGCACCCACAAGCACTACGAGCCGCTCGGACGCTCCGTCCCTGCCGCATGCCGCTCAGTGCGCTACCAACTCGAGCAGAGCACAGGCCTCCCGATAGGCGGCGTCCTGCTTGGTAATCCGGGTCTGACCAGCAGGGTTCCACTGAACGCC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 984913-982563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 984912 29 96.6 33 ............................C AGGTCACCTCTCTGTCCACCACGGTAACCGGCC 984850 29 96.6 32 ............................T CTGTTAGAACTCGGGGGCGGTGTAGTAGGAGG 984789 29 100.0 32 ............................. GAGGAAGGGGGCGTAGCGCCGTGGCGTATACA 984728 29 100.0 32 ............................. TCTTGGGCGGATCTCTGCACCGACGTCCTGAT 984667 29 100.0 32 ............................. GCGGCGTTCGCGGCGTTGCGTGGGCGCGCGAA 984606 29 100.0 32 ............................. GCGTGTTCGTCTTTGCCGCGTACCAGCGCCCG 984545 29 100.0 33 ............................. GAACAAATAACCAAGGCGGTAACAACATGCCAC 984483 29 100.0 32 ............................. CGAACGACTTGATTCCGTTCCAGATGTTCGTG 984422 29 96.6 32 ............................C GTTCGAGCGTATTGGCGCGCCTACGGCGGTTT 984361 29 96.6 32 ............................C GCCGCCCGACCAATGGGCCTCGAAGGAAGCCG 984300 29 96.6 33 ............................C CAACGCCGCGGCCCGCTGATAAATAGCCGACGC 984238 29 96.6 32 ............................C TCTAAGGGGCGGACGTCCGTCTACCTCGCCTC 984177 29 96.6 32 ............................T GGCAATGGAACCGCGTTTGCAGGCATGCGAGC 984116 29 96.6 32 ............................T CAATAGTTGGCGCACTACCAGCGCCACGAACA 984055 29 96.6 32 ............................C GTAGCCGGTAATCTGGCCGCTTTCGGTGCACT 983994 29 96.6 31 ............................T AGATGCTGCACCCATTGGGTATGTGTTGGGC 983934 29 96.6 32 ............................T GTGTCTCCCCGGCTCGGGATTGACGCTTACTC 983873 29 96.6 32 ............................C GGGCCTCGTCTTCAACGGCGTACTCCTCTACG 983812 29 96.6 32 ............................C GGCCGCCGCACACACATACGGAACATCGACAC 983751 29 96.6 31 ............................C GATTAGGGTTCCTTTCGTCCGCCGCCGATGA 983691 29 96.6 32 ............................C TCCATTGCTGTGGATGTCGGGCGTGGTGCAGA 983630 29 100.0 32 ............................. TATTCCAGTTCTGGAGCGCTAACGCGCATCGC 983569 29 96.6 32 ............................T GGGAGACGGGGCCAAGAGCGAAATACGGATGC 983508 29 100.0 32 ............................. TTGAAGCTAACCTCCCCGTAATTGTTGACGAT 983447 29 100.0 32 ............................. ACGGCAGCGTGTCTGTTCGCACGATTGACGCC 983386 29 100.0 32 ............................. ATGAGCGTCGATATTCTTGCCGAGGTGGTGCG 983325 29 100.0 32 ............................. TACAGCGGCCTATGGTTGAGGGCGTGCTCTTT 983264 29 100.0 32 ............................. TAGAGCCTCATGCCGCCTCACCCACCCGCATT 983203 29 96.6 33 ............................A GTCGGGGTCGGTCAGCGCCCGCTCTACGGCGGC 983141 29 96.6 32 ............................C CAAAATATTGAGACCTACACGCGTCAGGGCTG 983080 29 100.0 32 ............................. GACACTACATGCTCCAGCGCCTGATCACCGAG 983019 29 100.0 32 ............................. GGGGCCTGCATCGCTGCCCTGGACGCTGGGGA 982958 29 96.6 32 ............................C CAGTCACCGGTCTTTACATAGGGGGTGCCGCC 982897 29 100.0 32 ............................. GCGTCCCCAACCTCGGCGGCGTCGAAACCTGG 982836 29 100.0 32 ............................. TAACCATCTCCCTCGCCGACGGCGTATGGACA 982775 29 96.6 32 ............................T GCCCGGAACTCCTCCTGCATGGGCACGGGTGC 982714 29 100.0 33 ............................. GGACGGCACCACCAACACCGAGATTGTCGGCAC 982652 29 96.6 32 ............................C TTCTGGGACCACGGCCGGGCGACGCAGATCGG 982591 29 93.1 0 ..G.........................C | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.0 32 GTCGACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCGGCGACTAGTTGCAGGTGGCGCGAACTATTCGGAAGAGGATGCAGGCGGATGGTAGTGCTGATTCTTTCGGCCTCACCCGCATCACTACGGGGCGCCATAACGCGCTGGCTGCTCGAGGTGAGCCCGGGTGTGTTCGTCGGGCATCTGTCCGCCCGGGTGCGCGAACAGTTGTGGGAGCTCGTCAGGGCGTACATCGGCGATGGTCGGGCACTGCTCATCTGGTCTGCACGCTCCGAGCAGCACTTCGAGATCGCCTCCCTCGGTCACGACCGCGATCCGGTCGATATTGAGGGCTGCATCGTGATGCGCACACCGTATCGGCAGATCGAAGGGGCCAAGTCGATTCCCGGCGCGATAAAGCCCGCCAAGGAATCATGGTCGATTGCAGCCCGACGCCGCCGCTTCCGCAATTCGACGGAGCGGGCACTAGGTCAGCAGTAAAGGAATCACGTGTAGTGTTTGCTGCAGCGCCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : ACGGCCCAAGTTGAGCTTTCTATGACCTCACTGAACAACGTCGACACCGATGGCAAGCCGAAGCGTTGCTTCACGACGCCCCGAGTGAACGCACCTGACCGGGCGGCATGTCGGCGTCCTCACGCCACACTACGAGCATCGGCTGCTCCTGGTCGGCGGCCGCTACCACGATGGCATCCACGACGTCTCGTGTATACGCCCCCAACTGGTTGACCTCCGCTGTCACCCCAGGCGGCGGCGTGCACCCGCCCTTCTCCCATGTTTGGACCGTGCCCTCGGGTACTGCCAAAAGCTCAGCCATGTGCAGGCACAAAGCCCTTTCCACCTAATCCGTGCGAACGAAGGCGGCTCGCATGGGCGTCAGAAACGCATAGGCAGAGGCGAGTTGGCCTGCCCGCAGCGCGTCACGCGCCAAGTGGGGGCTGGCTCTCGCCTCTGTTCGGGCGAGTCTATTCCACATCCCCCACACGCACACCATCATGACCAGCTCAGTATGCTCA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2599059-2600034 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2599059 36 77.8 37 ...C.G..CT.C......GCC............... CGACGACATCAAAGAGGATCTGCTTCCAGGCGGTGCC 2599132 36 97.2 38 ........................A........... CACCGAGGACACATTCGCACAGACACCCAAGGCCGACT 2599206 36 91.7 36 .T....................C.....A....... TGCTTCGCTGGACGGTACGGACTGTGAAGAGACATA 2599278 36 97.2 36 ...................C................ CCGCAGGCTGAGACCGATCTTGGAGGCGATCGTGTC 2599350 36 97.2 35 .........................A.......... ATTCGTCGGCTACCTCCTACAGCACTACCTCAATG 2599421 36 100.0 37 .................................... GCAAGTGGGTCAAGGTCTGCTCACGGACCGCGGCATC 2599494 36 100.0 37 .................................... CGGAGAGAGGCCGGATGTTCCACGCCGAACAAGAACT 2599567 36 100.0 36 .................................... GGCGTCGGAGAACGCATGGGTCACCTTGGAGGAGTG 2599639 36 100.0 36 .................................... ATGGGGAAGCGAGGTCCGCTGCCTAAGCGTTCCGAC 2599711 36 100.0 36 .................................... CTCCGGCCTTGTTGGCGGCACTGACGGCAGACAGGT 2599783 36 100.0 36 .................................... GTGGACTGAGGAGTGGGACGTTCACATTTCCGAGCT 2599855 36 100.0 36 .................................... CACGGTCGCCACCACAGTGAAGGACTGGGCCGCGTC 2599927 36 100.0 36 .................................... GGAGTACCAGCGACGCATCCCCGAAGCCACTAAGGG 2599999 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 97.2 36 GCCTCAATGGAGCCCGGCCTTGAAGGCCGGGAAGAC # Left flank : CCTGCAACGAAGGTGACGTAGTACACGGGGCTCGGATTGGTGCCAGCACGGGCTAGCCGATAAAGTACCGACTCGGTGCGACGGCGTCGCCCCATGGTGGCTGTAGCTCAGTCGGTAGAGCGCCTGGTTGTGGTCCAGGAGGTCGCGAGTTCAAGCCTCGTCAGCCACCCCACTTCTTGCAGCCGCAGTGCTGCTGCAAAGCCCTGACCCTGGCGCTGCATTCCGAGCCGCCGTTTCCCGCAGCCGCACTACCGGGCCGTCGCTCACCCCCACTGCCCGCTCACGGCATCGGGCTGTCCAAATCCGGCATAAACAAGCCTTTAACGGCGATCGGCGTTCCCCCGACCCTTGAAATCTTGCGGTTTGGTCGCTCGGCAGTCGATGTCTCGCCATCGTTTATGCCGGATTTGGACATTCGTTCCGGCGATCCGGGCCCGAAGAAGACAGGACCCGGGCGCAGCGCGAGTGCCGGCCCCGGTAGTCGGTGGAGACGGCGTGTT # Right flank : CCGCTCGCAGAATACGCCGCGGCACGTCAACGATTCAACGCGGTCTCGCGAGCGCTGGCTCAGAAACGCCAGATCCGATCGCGCCCCATCGAGCGTCAACCACCAGAAAACCCCGCCATACCGCGAATTCGAGCGCTCCCCAGGAATCCGACCGGCACCCGAGCGCTCGCTAGACAACCTGCGCCTCCCGCGTAGGCAACCCCCGGCGACGCCCAACGAACGTGAAGCGATCCTCGCCGATCTCACCCAGATCCACAATCACCACCGAATCCTCATCCAGGTTCATGATCCTCTCACCGTCGGCGCGCAGGTGGACAAGCTCGCTGCGGGTCAGGTCGCAGATGAATACAGAGTACTGCAGCCGCTCACCGTTGGCCTCCATCAGTTTGCAGATGCGACGCAGCCGCCCCGGCTTGCGGATGTCGTAAGCAATGAGGTACCTGCGTCGGTTCGTCCTCATCGGGTCACCATCGCCGTGTACTCGTCCAACTCCCCCAGCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGCCTTGAAGGCCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 6 3390370-3387752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3390369 36 91.7 36 ..T...G................G............ GGTGCTGAGCTTCACCAATGCCGCTGCCGACCACAT 3390297 36 91.7 37 .................C.T.............A.. TTGTTGGGCATTGGTTCGATCTGGGCCACCGCGGGAC 3390224 36 94.4 35 .................C.T................ GCGCGCACCCTCGCGGCGGCGTTGACGGGTGCTGT 3390153 36 77.8 21 .................CG.GAA.....T..C...A GTTTGCCACCCAGGAGCTACT CCAG [3390127] Deletion [3390097] 3390092 36 91.7 36 .................C.T...G............ AAGCAAGGAGAAGGGCGTCTGGCGCACCATCGACTC 3390020 36 100.0 36 .................................... TAGCAGAGGCATCTCACGGGCCGGCAGACCACCCAA 3389948 36 100.0 36 .................................... GATCAGGTCTGGTTGGGTTTGGTTTATCAGTACCCC 3389876 36 100.0 36 .................................... AAGCATGCGCACCGTCATGCACACCGACTGGCCAGG 3389804 36 94.4 35 .................C.T................ ACGCCGGCCACCGGCCGCAGCACGTGCACGGTCAC 3389733 36 94.4 37 .................C.T................ CCCGGGCGCTGGAGTACGAGTCCGACAACTTCGCCTA 3389660 36 94.4 36 .................C.T................ CTGGAGATCCTGCACGACTGCCCGGTGCGGATTCTG 3389588 36 100.0 36 .................................... CCGAGATCGAGACCGTCCAGGCGCTCATCGAAACCG 3389516 36 94.4 35 .................C.T................ TCGCCGACGATGTACAGGGTGCCGCGCCGGCGGAT 3389445 36 100.0 36 .................................... CGCTGTCGTCGACGCGCTCGCGCTGGAGGACGTCAA 3389373 36 100.0 36 .................................... CGGCAAGGAGATCGACATTACCGAGACCATCGCCCT 3389301 36 100.0 37 .................................... GGCTACCCGACAGCGCCCCCGTGTCAGCCAAGATGTC 3389228 36 100.0 36 .................................... GCTCGCCGACGAGCTGGTCGTTGCCAACGGCAATGG 3389156 36 100.0 35 .................................... CGGCAGGCACCTGATAGCGGTGCAGCGCATAGTCG 3389085 36 100.0 37 .................................... CCACCGGCTGGTGGCTGTGGTGGGACTGACCACCCTC 3389012 36 100.0 37 .................................... GCAATGAGAATTACGCGACGGCGGCAACCAACTCCGC 3388939 36 100.0 37 .................................... TAGCGCGATTGAAGGCGGATTGTCAGACCAAGCCCTA 3388866 36 100.0 36 .................................... CTCCGAGCGTGCGGGCGGTATTGACCTGTTCGACCG 3388794 36 100.0 37 .................................... GACCATGACGCCGAGTGAGATGGTTATGTCCACGCTG 3388721 36 100.0 33 .................................... CTGGAATATGTCTCGCGCGCTTACGATAGCGAG 3388652 36 100.0 38 .................................... GCGGTTACTGAGCCGTCAAGGGTTGCGGATCAGGGCCG 3388578 36 100.0 35 .................................... TTCGACCGGCCACTAGAGTTTTTCGGCGGCGACGT 3388507 36 100.0 37 .................................... TCGACCAATTGCTGGGGCTCGTCGCCGATAGTAGCGG 3388434 36 100.0 36 .................................... CCGTGGATCGAATGCTGGTCGTAAGCGATGTAGCGG 3388362 36 100.0 35 .................................... CGAGCGCGGCTATGTCAACCTGAAAGAGTGGTCCC 3388291 36 100.0 36 .................................... ATCCCCGCTGTCGCGGAAGGGATTGATGGTCTTCAG 3388219 36 100.0 36 .................................... GTCGTAGCCGTACAGCTCGCGCGAGGGGTTGGTGCC 3388147 36 100.0 37 .................................... GGGCGAGGCCCACAACACCGGGCGAGACGTCACCACA 3388074 36 100.0 36 .................................... GCACGGCAGGGCCACCGTCAGCGACGGAGTCGATCA 3388002 36 100.0 36 .................................... CTCGGGAGTGGTGATGATGATGTTCGCGCCAGAGTA 3387930 36 100.0 36 .................................... CACCGCGCCCGGGTACTCCACGACCACTGGGTCGAC 3387858 36 100.0 35 .................................... TTGACGCCCTTGTCATCCTCGGCGTCGGTGAACGT 3387787 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 37 36 98.0 36 GCCTCAATGGAGCCCGGTCGTGGAGACCGGGAAGAC # Left flank : ACGTTGCCGCGCGTGTCCGGAGACGGCCCAGACTGGAAACCGCCGGGTGGAGTGGCATGCTGCCGCGCGTGTCCGGAGACGGCCTGCTGGCCCGGTTGCGTGAGCGCGCCGAGACCCACAACCTGCCGGTCGTTGTGGTATCCGTGAAGGGGCTCTTCTGGTTAGTGGGTGTGGGTGGTGTGGGGTGTGTGCCCCGCCGTGGGACGGAATGATGCTCCTATGGTTGTCAAAATCGATGACAAACGCCGCCTACGGCCGCGAGAGCCGATCTGACACCCGCATGATTCCAACGTTCTGCCCGCGGCTGGTGCCGTCTCCTACATCGTTTGTCATAGATCTGGACACTCCCTGCCTTCGCCCGCCGGAATACTCGCCAGCGGCAAGCTGCCCGGCGTCGACGGTGGCCGGCGAGCAGGCCAGCATCCGACATCGCAGGTGCCAAACACCACGTCACGTCCCCACTCCACTCCCCGAGTCGAAGAAGCCCGTTTTGTCGCCGC # Right flank : AGCTCGCTAATTTTGCCGCAGCATGCCAAGGATTGTACCTGATCTCGCGAGCGCTGCCGTTGAAACGCATTACTCAGCCACGGTGCCCTGCTCGGCGAATGGTAAGAAAACCGCGTCACGCCGCGAACTCGAGCGCTTCCCAGGGAATCGGTCGGCACCGGAGCGCTCGCACGTAGTCGGCGTCCTTCGGTTCGGTGAGCCTGCGTGTTGGTTGACGAGCATGAGACGTTCCTCCTCGAACTCGCAGTGCCTACATGCGCCAGGCTACTCTCGCCGCAACAGCTTCTACCGATATCGGCGATGCGGGGACGCTGCGGCACGTCGGTTTGTTAGCGGGAGCGCCAGGACCGCAGGCCGGCCTCGCCTGCGGCGATCGCGCCGAACAGGGCGCCCGCAATCGGCCAGATTATCCAGCTGATGTCCCAGCTGGAGCCGATGAAGGACCAGGCGAGGTAGATGGCCACGCAGCCGATCCAGTACGGCCCGGCGATCGCCTCAAT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGTCGTGGAGACCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.10,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 7 3425747-3424677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================== ================== 3425746 37 100.0 37 ..................................... TGTCGATGGCTTGCTGTACCGTTTCGTGAAGTCGGGC 3425672 37 100.0 36 ..................................... CAAAACTGGGGATGCGCATGACTCATCTTCCTCTCT 3425599 37 100.0 36 ..................................... ACAAGCTCATGGAGCAAGTCCTGCCACTGCTGGCCG 3425526 37 100.0 36 ..................................... TGACTTCAGCTCGGCGTTCAGCGCTGCCTGCCATAG 3425453 37 97.3 36 .....................C............... AGAATACTCTCAATGGTCATCGGTAGTCTCCTCTCA 3425380 37 97.3 36 .....................C............... GCTCAGACGCCTCGGCAACAGTGGCGTCCTCGGTGG 3425307 37 100.0 37 ..................................... CAACCTGGCCGGCATTGTCATCCTCCTCCTTGGGCGG 3425233 37 100.0 35 ..................................... ATTAGAATGTAAGCCTCGCCGGACCGCCATATGCT 3425161 37 100.0 36 ..................................... AGATCCGGCCTCGCGCACCAGCTTCATCAGTGCGGC 3425088 37 100.0 35 ..................................... CTCCGCCTCGCGGCGAAGAAGCTCCATTTCCCCCG 3425016 37 100.0 33 ..................................... CATGTGAGTGAGACGTAGAGTGATGAGTGTGGA 3424946 37 100.0 39 ..................................... GTCATAGGGGACTCCCCTCCGGGGCGGAGTGAGCGAACC 3424870 37 97.3 120 ......................C.............. TCATCGACCATGCCGGGCGCATGACACGCCACACCAAAGACCGGTAGAATCTGAGGCGAGGCGGGAGCCAGCCCACTCTTGGCGCGCAACGCGCTGCGGGCAGGCCACCCGCCTCCTCTT 3424713 37 89.2 0 .....................C...........G.CG | ========== ====== ====== ====== ===================================== ======================================================================================================================== ================== 14 37 98.6 43 GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Left flank : GGGCGTTTAGAACGCGGGCTCGCGGTCTGTTACGCCTGTTCGGGGTTTACTACGCCACTTAGGGGTCTGCTGAATGGCTCAGAGGCCTTCAGCAGACCGTTAACTGGCGTTGTTAACGGTGAAGCGGCGTAGTAGATGTCTGGTGCGGAGGTGAGTGCCCCCGCGGTGGTGCATGGCGGGGTGTTCGCGGTGTCGGGCAACGGTGGCGGGTATGGTGTGTGGGGTTGTTGGGACGTGTGGGGTTGGCGTGGTACTCGCCAGATGGTCACAATTCGGTCTACGGTACAAAGATTGGTGCATTTTGACCCTGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTTTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTCCCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGG # Right flank : CGGGCGGGGCGTGTGGGGACCGTCGGCCTCGGATCGGCACTATGGTTAGTGCCTGCTTAGTCAGGCGGTTCAGCGGACCCTGTTCACTCCACTGCTCGGTAGAGCGCGTGCGGCACGCCTGTGGCCGCACTGCTTTCAGGACGCCTGGGCCCAGGACCTCGCCCAAAGAATGACAGGGCGCATGCCCGAACTAGCGGCAGCGGACCTGGGTGACGTCCCCGCAGCCATCTACGCCCTGCGGCATCGGGCTGCGGTAACTGAGGTGCGCAGGTACCTTCGGGACCACCCCGGCGCCGCCGTCGTCGACCTGGGCTGCGGAATGGACCGACTCGTCGACGGTTTGGACGCCCCTGCGGCGCGCGTCTATTGCCTGGACTTGCCGGAAGTCATGAGCCTGCGGCGTGAGTGGCTACCACCTCACCCACGTGAGAGGGAACTGCCCGCCTCTCTGACGGACACCGACTGGATGGCAGACGTCGACGCCGACGCCGGAATGATCG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 8 3673540-3671345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027862.1 Actinomyces sp. Z16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 3673539 36 100.0 38 .................................... ATCGCCGGACGTGTCCACGACTGGACCATGGCGATGAT 3673465 36 100.0 37 .................................... CCTCACGCACTTTCCGACACTCACCCGCGTCAGCATG 3673392 36 100.0 37 .................................... ACGCACACGTCCGCCCCGTACATGGGTGTGTCCCGCG 3673319 36 100.0 35 .................................... CTCACCAGCGCGCGAGGACCACGGTGCGGTCGGGT 3673248 36 100.0 37 .................................... GTGGCCGAGGCCGTCCGCCCGGCGTCCCCGGAGCGCA 3673175 36 100.0 36 .................................... ACGGGTATGCGCACGACGCCCTGGCTGTACCCCTGC 3673103 36 100.0 37 .................................... CGGCCCGGCCTGCCCCGGGTCAAGCCGGGCCGGTAAC 3673030 36 100.0 37 .................................... AAGAGGTCGGGGTTGGCTGTGATTTCCTCGAGCGCGT 3672957 36 100.0 34 .................................... GGTTGGATACCCGCCCAACCAACCTAGCCACAAG 3672887 36 100.0 35 .................................... GACGCGCCCGTGTCCAAACCTTCGGGGCGCGCAAG 3672816 36 100.0 36 .................................... ACGCTCCCCAAGCACACCCGCAACCACTAACCACTA 3672744 36 100.0 35 .................................... TGGTCGAGCAGCCGGGACCACCACAGGTCCGACCC 3672673 36 100.0 35 .................................... TCGAGACGTTGTCAACACTCCTTCCCGGCCCCACT 3672602 36 100.0 37 .................................... AAGCTGGACTTCCCCGGCGTCGAGCGCGTCTTCTACG 3672529 36 100.0 35 .................................... TGGCGGATCGCGCACGAGTACTTGCCCTCGTTCCA 3672458 36 100.0 35 .................................... AACGAGGCGTTGGGGATGACCGTCAATCAGTTGCT 3672387 36 100.0 36 .................................... ACCGTGGTACGCACTAAGGCAAGTGTTCCCCGCCCG 3672315 36 100.0 36 .................................... ATCGGCACCAACACACGGCTGACCACGACCGAACTC 3672243 36 100.0 36 .................................... TCTTGAGGGGCGCGTCCGGGCGGGCACGCGAACGTC 3672171 36 100.0 35 .................................... GCAAAGACGTCGACTGGCGGCAGTTGGTGCCACCG 3672100 36 97.2 36 ........T........................... CTCGCCGACCTGCATGATCGCGTCGTCGTCGAAGTA 3672028 36 97.2 36 ........T........................... CTCGCCGACCTGCATGATCGCGTCGTCGTCGAAGTA 3671956 36 100.0 35 .................................... TTCGAGCGTGGTCGTCTAACCTGTCCGTAGCTATT 3671885 36 100.0 37 .................................... GCGTCGATCCTCTCCTTAGTCGAAGCGGCAGTGACTT 3671812 36 97.2 38 ..............T..................... GGGGACGGCACCAAGCCCTACCTGCGGCCCGACGGCAG 3671738 36 100.0 35 .................................... GACCACCCGGACATGTGGCGGTACACCTCGCACAT 3671667 36 91.7 35 ..............A...G.....G........... GGCGGCTGGCGACGGCCAACCCAGGGTGGCCTCGG 3671596 36 94.4 37 .........TT......................... GCACTCCACCTCCTCGATGAGGCTGGATACCCCACCG 3671523 36 83.3 107 ...............A....C...T.....C.C..T CATCTGCAGGTTGGATCGTTCGTCGGGGTTCGACGGGCTACAGTTTTCGTGGAGTCGCACTTCATTGAGGTACTGCGACGTGCTTTGCACCTCGTCGCTTCAACAAG 3671380 36 88.9 0 .........T.....A..................CT | ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 30 36 98.3 38 GTTGCAGTCCCTCCGGGGACTGCACTTCATTGAGGC # Left flank : CGATTCGCTGATGCGGGACGATGTTAGGCGGGTCCTGGTAGCTTATGATGTGCCGTCGGATAGACGCCGAAGCCGGGTTGCCAAGAAACTGCTCAAGTATGGCGATCGTATCCAGTACTCGGTCTTTGTTGTTGATGCTACTCCGGCGAAGCTTTTGCGGATGCGTGCCGAGCTCGACGAGGTCATCGATCCCGATGAGGATTCTGTGTTGCTGTGCGATGTAGGCCTGTTGGCCAGCGTTGACGCCGAGCGCTTTTCCTACATCGGTTTGACCCGGACGATCACGCCTGAGGGGCCGCTTGTCGCGTAGCCTGTGACTGGCGGCGAGCGCTCCGGTGGTCCGGATGAGCCCGGTAGCGCTCGCCGCCCTCAACGCCGCGTTTTGTGGCATTTCGGAGGACACACGGCTCGGTGTGGAGTGCGTCAAGGTGGTGCGTCCGGGACGAGCGCTCGCGATGTGGCTCCATAGTCGCGACGTGGTGGGCTAATCTATTGGTGCT # Right flank : GGGCGCTGACATCATGTCTCACAGACATGCATGTCGGCGCCCAGCCGAACGTTTCGGACCTCCGTCCCCCGCCTCGGCGTTTACGCGCGCCGCCGTCTACTCCGTGGGCGGCGGCGGGGCGGAGACGGGGCGGCCGTCGTTGGTCAGTTCGAGGACGCGCGCGTGGATGGAGGTGCGCCCCTGGAGCGCGGCGCGCAGGGCCCGGTGCAGACCGGTCTCCAGATACAACTCCCCGTTCCAGGCGACGACGTGGGCGAACAAATCACCGTAGAAGGTGGAGTCGTCGTCGAGCAGGCCGCGCAGGTCCAGCTGCGCCCGCGTGGTCACCAACTGGTCGAGCCGGATCTGACGAGGAGGGATGGCCGCCCAGTCGCGCTGCGCAGTGACCCCATGAGCGGGGTAGGGCGCACTGTCGCCGACGGCCTTGAAGATCACGAACCCATGCTAACGGGAACGTGTGACACACCGGGACACGGAACGGCATTCGGACAATCCCGCCC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCCCTCCGGGGACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //