Array 1 2-152 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLE01000112.1 Escherichia coli strain LTSIAB114 NODE_1237_length_337_cov_15.617210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 63 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 124 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGCCCGCCAATGCGGGCCGATTTATCCCGAGTTCCCCGCGCCAGCGGGGATAAACCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94531-93261 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLE01000106.1 Escherichia coli strain LTSIAB114 NODE_1108_length_719820_cov_54.562347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 94530 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 94469 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 94408 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 94347 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 94286 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 94225 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 94164 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 94103 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 94042 29 100.0 38 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCNNNNNNN 93975 29 89.7 32 NNN.......................... GCGCACATATGAAAAAAGCCACGGGTTACGCG 93914 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 93853 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 93792 29 100.0 39 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAANNNNNNNN 93724 29 93.1 32 NN........................... CAATTCATAAATTAATTTACTATTTTGAGTGC 93663 29 100.0 39 ............................. GTCTATATTATGATGAAGAGGCAACCATTGANNNNNNNN 93595 29 93.1 32 NN........................... TGATTGTGGAACATCCGTTTGACCTGCTGGCC 93534 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 93473 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 93411 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 93350 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 93289 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 98.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121315-120233 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLE01000106.1 Escherichia coli strain LTSIAB114 NODE_1108_length_719820_cov_54.562347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 121314 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 121253 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 121192 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 121131 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 121070 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 121009 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 120948 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 120887 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 120826 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 120765 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 120704 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 120643 29 100.0 41 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACNNNNNNNNNNA 120573 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 120512 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 120451 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 120390 29 100.0 39 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCNNNNNNNNN 120322 29 96.6 32 N............................ CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 120261 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ========================================= ================== 18 29 99.6 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //