Array 1 135760-136104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 135760 37 100.0 39 ..................................... TGCCGATAAATCCGACGCCATGTCCATTTGGATGGCGTC 135836 37 100.0 36 ..................................... TTCTGACCACTTCATCGAGGCCCACCCAGATTGGGT 135909 37 100.0 39 ..................................... ATTACTTGAGTTACTGACAGTAGAACACGAGTTGAGAGA 135985 37 100.0 46 ..................................... GCTGCGTTGCGGCGGCAGCTCAAAGAATTTGGGGTGAAGCCCACTG 136068 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================== ================== 5 37 99.5 40 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Left flank : TGACGGCCTCAGCCTGGCCGAAGAGCCCTTCGACCGCAAGCCGCTAGAGGTCTCCCAAGATCTGGCCGCCCTGATGCAGCCGCCGGTTCCGCCCAACGAGCTGAGCCTGCCGGAGCTGGCGGAGCGCATCTCCCGCCTGGCCCGCTCCAACCTCAATACCCAGCCCCTGCGCACCGAGTTCCACATGCGCTTTTCCCTGCCCTTGGCCAGCTTTTTTGCCGTCTTGATCTCCCTTCCCCTGGGATCCACCACTGCGCGGCGGGTGGGCCGCTATGGGGGTGTCGTCTTCGGGATCCTGTTGGTGTTTGCCTACTACGTGGTGCTGAGTGTGTCTCGCAGCCTGGGCGAAGCAGGAGCCCTTCCCCCCTGGGCGGCAGCCTGGAGCTTCAACATCCTCTTCGGCGGCCTCGGCCTGCTGCTGTTGGCCCGCTTCCTGCGCTAGGGATCCCTTCTGGGCAGAGCAACCCCCGACCTAACCAGGGATCCACCGGATCCCTATA # Right flank : TCCTACCCCCGGAAAAGGCTGAATCCATAAGGTTTTCAAGGTGCGTTTGCGAGGGAGTACGGAGACTTCCCGAAACAGATATTAACACTGCTTCGCCGGATAAGCGCAAGTCGGGAAATTCGCTGTTTTGAGGGCATTATGTCACGTTTTTGGGTCAATTTGGGCAAGCAGTTCTAGATTCCTCTTAAAGCCTGGTGTTGCCAGGGGAAAGCTAACAACGGCTCGCCCCGACAGATTGCGCACAAAACTTTACAATTCCTGCCGCCCCCCGTCGGCCAGGGATCCCATCCCAGCGCTGGTCTGTCTAGACTGGAAGACAGCCCTATGGGGATCCCTATGCGCATTGGTGTGCCCAAAGAGATCAAGGAGCAGGAGTTTCGCGTTGGCCTGACGCCGGCGGCGGTGCGGGCTCTGACGGAGCAGGGGCACCAGGTGTGGGTGGAAACCCAAGCAGGCCAGGGGGCGGGATTTAGCGACGAGGACTACCAAAAAGCGGGGGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 283254-284108 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 283254 36 100.0 36 .................................... ATCCGGGGTACGAGGGATCCATAACTCTCTGCCTGT 283326 36 100.0 42 .................................... CTTCCGCGCGGGCTCGGTAGTACTCCCGATCCTGCTCTTTTT 283404 36 100.0 36 .................................... CCAGCCTTGGACAATGTCCCACTCGGCGAGTGAGCA 283476 36 100.0 37 .................................... GTGTTGTAACAAAAAAGGAGGGTGATTAATAAATCTT 283549 36 100.0 36 .................................... CTCTCTTCCTACACCCTGGAAGAAGTCATTCATCAT 283621 36 100.0 39 .................................... GGTAAACATAACAAACCTCCCTTATTCAGGGATAAAGAA 283696 36 100.0 37 .................................... CTCCAGTACAAGCCAGTAACCACGGTACCGGCATACT 283769 36 100.0 36 .................................... TTGGCAATGTTAAGACGCGTGGCTTTCATTAAGCAT 283841 36 100.0 39 .................................... AACCAACATGTAAAAGCGTTCGGCGTAGTTATTATGGAT 283916 36 100.0 36 .................................... ATCCTTGTGTAGTTCGGGATCCCTAGAGCATTAGCA 283988 36 97.2 50 .................................G.. GCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGCCACGCGTCCTCAA 284074 35 77.8 0 ...........C..............T.-G..TGTA | ========== ====== ====== ====== ==================================== ================================================== ================== 12 36 97.9 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCCTAGAAATTGGAAACGCGGAGGCACTCCGCCATGTCTCCGTAAATCACCCGCA # Right flank : AGGTTGGCCAAGTAAGCGGCTCCCCCTTCCTTGGGGGGAAACTAGCAGCGGGGATCCCCAGGTGTTGAACATGCGCTTTGCGTTTTGCCGATACCGGCGGCCTTTCCGCCAGCCCTTGCGCACGCGCTACGGCCTGTGGTCTATCCGCGAAGGGATCCTGGTTCGGCTGACGGACGCGGAGACGGGAGGTCAGGGCTATGGGGAGATTGCCCCCATCCCCTGGTTGGGCAGCGAGACCGTAGAGGAAGCGCTGGCATTTTGTCAGCAGTTGCCCCCTGAGCTGTCGGAAGCAGAGATCGAGAAGATCCCGGCAACCTTGCCCGCCACGCGCTTTGGGCTGGAATGCGCCTGGCTGGCCTGTCGGGATCCCGGCTGGCTGGCAAGGGATCTCTCCGGGCTTTCCTGGTGTGGGCTTTTTGGGAAAACCCCACCCTCAGGTTCCTACCCCGCCTACAAGGTCAAGGTGGGGGTGGAGCCTCTCGAGCAGGAGGTGAAAAAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 928620-928355 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 928619 36 100.0 43 .................................... TTTCATGCTGGGCTTTGCCCAGTGATGTGTTGTTTCGGAGGTC 928540 36 97.2 40 .........................A.......... CCAGACGTTTTACGTGGTGGAAGTCTCCACCCGAGGCGGG 928464 36 100.0 38 .................................... AAGCTGAACGATGGCGTAGTGATGTCGGCTCCCAGCCC 928390 36 97.2 0 .......................C............ | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 98.6 41 GTTTCCAATTTCTAGGGATCCCCACGAAGGGGGAAC # Left flank : GAGTGGGATAACCCCTTGATTACAGGCATCGGCTGGATCAGCGAACTCATTCGTTTGTGTGGAGCTGAAGACATCTTTTCCGAATTCAGTGCCTATCCCGATGCACGGCGCCGGATTATAGCTGAACCGGCAGAGGTCGTGCGGCGCGCTCCAGACATCATCCTGGTGTCCTGGTGTGGCAAGAGGTTCAAGCCTGAGCGGCTTCACAGCCGCCCTGGGTGGGAGACTATCCCGGCGGTCTGGAGCGGACACGTCTACGAGCTGCCGTCAGAGGTGATTCTGCAGCCCGGTCCGGCTGCCTTGACCGATGGGGTGCAGTTGCTGCTGCAGATCTTTGACCGCTGGGAGGCCCAATCCTCCGCCTAAGCTTTGATGCTGCTTTCGATATGGTTGTGGGCCTGGACGGCGTCATACTTGAGCCCGAAGTCTTCTAGCGCGTACAGCACTGCCCGATTGTGGCTGCTGCACAGGCGCGTGAAGTTTGGGAGCACCTGGCGGTT # Right flank : TTTCCCATTATTACGAGAGTCATGATAGCAGACGAGCAGGAGTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATTTCTAGGGATCCCCACGAAGGGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 4 1491818-1492000 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================== ================== 1491818 33 100.0 43 ................................. CTCTTCAGTAACTGGACCTTTTATGCCGACTACGCTGAACGTT 1491894 33 97.0 41 .............................A... GACGGATTAATTTTCGTCTATCGCAACTTAGGTAAATAGTT 1491968 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =========================================== ================== 3 33 99.0 42 TCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC # Left flank : GGATCTGCCAGCCGCTGTGGGGAGAACGGGCCACAAACAGCATGCCGTAGCGCTCGCTCCCGCTGAGCTGGGCCAGAACTTCTGTTTGGCCAGGGAAGGGGTAGCCCGCCTGGTGCCAGAGGTATTTGGCAATGGGAGCGGTCACGATCCCCTGGAACTGGCCCCGCAGCGCTTCTTCAATAGCTGTTTTCAGGTAGGCAAAGCTGGCCGCCCCGCTTGCAACATCCCCCCGGCCCACGCGCGACGGCTCTAGGTAGAAGCCGCTGCCGCCCTCCAGCACCGGGATCCCTGCCGGGTCGGCCAGGTCGGTTGCCCCTCGCTGGCGCAGAAGGCAGTAGGTAGCTTCCAAAACCTGCCGCTCGCCCACCACCGTTATCTGGGCGCAGGCCTGCACCTGGGGATCCGCCAGCGCCTTGAGCACAATCTCTGGCCCAATCCCCGCCGGATCTCCCAATGTCAGGGCTAGCTTCGGCAGCAGCAAGCTCATTTTCTATTTCTAG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 1492792-1492975 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1492792 38 100.0 35 ...................................... AAGCACCCCAAATGCAACATGCATTGTGGGAACTG 1492865 38 100.0 35 ...................................... CATCTCTACCTATATGGTAGCAGAAAGCTCTACAT 1492938 38 94.7 0 ....................................TC | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 98.2 36 GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGAAGAAGGAGGGTGACACCATAATTCAG # Right flank : CTACCCTTATTAAACCCAAGCGGGGCAAGGAATGCAAGGCCTATTTGCGAGGGGGTCGGTCGAAAACGGCAAAAAAGGGCCCCGAAGAGGGGGGGTGAGAGGCCTGAAAGCCTTGTGGCGCAAGGCATCGAGCGGGTCAACGAAAGAATCGGCCTTTGCGGGTTTTGGCGAGGCGCTCGCAGAGCTGCTGATACCGTTTTGGTGTGCTTTTGGCAACATGACCGGGGTTGGGATCCCTAGGGGCGAGGTGCCCTGCCCAGCGGGTTGTCTGCCAGCGGATCCCTGCCGGCAAAATGGTTTAATGGAAACTTAGCAACATTTTTGAGCAGCGGTTGCCCTCTATGGCCGAGACCTTCCTTTACAATGCCTTGCGTGCCGCCCTCGACGAAGAGATGGCCAGGGATCCCAATGTGTTTGTTCTGGGAGAGGATGTGGGCCACTACGGCGGCTCCTACAAAGTCACCAAAGACCTATATCGCAAATACGGGGAGATGCGCCTC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 6 1749351-1749014 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1749350 36 100.0 40 .................................... CTAAAAGAATTATTAATGCTGTTCGTAGATTTGGTTTACT 1749274 36 100.0 42 .................................... TCGATTGGGCTTTCCGGAGCTCAGCCACGAGGTTCTTGACAA 1749196 36 100.0 38 .................................... TTGAGGGCAGCTGCTATAACGTCGTCGTTCAACCTCAG 1749122 36 100.0 37 .................................... TTTCAGTGAAGTTCGGGACGTATTGGTAGCAAAATAC 1749049 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 100.0 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CCTTGTGATAAGCGCCGCAAGAAAATTGCCGACCTGCTAGAAGGCTACGGCAAGCGCGTGCAATACAGCGTGTTCGAGTGTGTCCTCGACAAGGACAAGTTCGAGGAGCTCAAGCTACGGCTCCGGAAAAGGGTCAAGCCCGATGAGGACAGCGTCCGCTTCTATCCCCTCACCAGCCACGCCCTTGACCAAGTGGAAATCTGGGGTGGGCCCCCCTTAACTGCACCCCCCCACTCGATCGTTGTCTAGCTCAAGCAACTCTCCACCCACTTCAGTACTTGATGTTCTCAAAAGCACACAAAAACGGTATCAACGCTTTTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCTCTCCCAAGCTCTTTTTTGCCCTCTTCGACCGACCCCCTCGCAAATGGGTCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 7 2706691-2706508 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2706690 36 100.0 38 .................................... TCTGGTCGTACAGCCGCTGAATCGCACAGCACAGGCGG 2706616 36 100.0 37 .................................... CCTCCTGTTTCCCCCAGAACAACAAAATTGGGGGCAA 2706543 36 97.2 0 ...............................A.... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 99.1 38 GTCGCTTCCCTTCGGGGAAGTGGAATTAATGGAAAC # Left flank : CTGCCACAACATCAGACCCCGCCGTTAATAGCACAGAAGTCATCGCCGCCGTTAGGGGAGCAATCAAGGCATTCATTTGAATCCCAATCCCCGGCACCACCTGGACAGAATAATAACTAACTATTGTCACCACAGCCGTGACAAGCACAATCAAAATTGGCGAAACACAGGTAAACTGATAAATGGCCAATAGGGTTGGAATCAGACCACCCCCGACATTCAACGCCACAATCGTTTTCTGTTCAATTCGCCTTAAGGGAATACCCCAAAAGAAGCGCATCGTCCACAATCGATCCAAATCAGGTACCATAGCTACTTTGGAAACTCTCTCATAAAGGGGGATATTAATCGTACTCTCAATAATTACTAGGGTCAGCAGCACAAGAGATAGGTTAGGAGAAAATTCGAGCTTTGCAACAGCAACTTGAACCGCATCTAGGGTAACCACCAACCAGAGAAACGGGAAGGCTAAGAGCAGGAGTAAAAAGAGTAGATAGGCA # Right flank : AAACAAACTATGGCAGCCAGGGAAACTGGCGAAAGTTAGGTGGGCGCTTTTCCAAAAAGGCGCGTTTGCCCTCAGCAGCTTCTTCGGTCATGTAGAACAGCAACGTCGCATCTCCGGCCAGCTCCTGCAGCCCCACCTGCCCATCGCAGTCGGCATTGAAGGCGGCTTTGAGGCAGCGGATGGCCAAGGGGCTGTGCTGGAGAATCTCTTGCGCCCAGCGGATCCCTTCAGCTTCCAGCTCTTCCACCGGCACCACGGCATTGACCAGACCCATCTCCAGGGCTTGGGCTGCGGTGTATTGGCGGCAGAGGAACCAAATCTCGCGGGCTTTTTTTTGCCCCACCACTCGCGCCAGGTAGGCGGCCCCAAAGCCCCCATCGAAGCTGCCCACCCTAGGGCCGGTTTGCCCAAAGATGGCATTATCGGCGGCAATGGTCAGGTCGCAGATGAGATGCAAAACATGGCCACCCCCAATGGCGTAGCCTGCCACTAGGGCAATC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCCTTCGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 2858428-2857897 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUV01000001.1 Synechococcus sp. 65AY640 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2858427 29 100.0 33 ............................. ACAAATACAGCCAGCTGGTGCGTCATTTGCCGA 2858365 29 96.6 34 ............................A GGCGTTGCGCCAAGGTTCACCTATTCCCCGGAGA 2858302 29 100.0 34 ............................. GCCACCCGTCGCACCGCGTCGGCCAGGTTGGGCA 2858239 29 100.0 34 ............................. GTGGTGCTGGTGCGCCCCGCCGGCTCCAGTTTGG 2858176 29 100.0 34 ............................. CCAGTAAGAGATTCACGATGGAAGTGAACAACCC 2858113 29 100.0 34 ............................. CCGCCGGACGCGCCAGATGAGCCGCCAGCAGAGC 2858050 29 100.0 34 ............................. CGCTCAATCTGCTCACAAATCTCCAGTGCTGAGA 2857987 29 96.6 34 ............................A ATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTAC 2857924 28 82.8 0 ............T.T.....A..-.G... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.3 34 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : CGGTTCGAGCGGATATTAGTTTCTTGAAGGATCGCTTTCAAGCCCCCATCAAAGTCAGCCGTGAAAAAGGGTATCACTACACTGATCGGGAATGGCGCTTGCCGACGATACCCCTCACTAAGGGGGAGCTGTTTGCCCTGACTTTGGGAGGGAGAATGCTGGAAGCCTACGCCGGATCGGCCTATGCCCCGCAGTTGCGCTCGGCAATTGGGCGGTTGGCGCAACGGCTTCCAGAGCAGGAGTGGCTGGATCTCCAGCAGCTAGCCGATGAGCGGCTCATCTTTCGGGCAGGGGCAGAAACCCATCTGGATTGGGAGATTTGGCAGCGGTTGGAGGATGCCTGTCGGGAGAAAAGACGAGTGTGGATGCGCTATCGCACCGCCAGCCGAGGCGATCAAGTGTCGGAACGGGAGTTGGATCCCTATCTCTTGCACATCTACCGCGGCACCAATCCCTACGTGATTGGCTGGTGCCACAAAAGACAAGAAGTGCGCTGGTTC # Right flank : GCTAGACAATTAAGACAATCTCACATCTACCGGGATCCCTTGCCTAGGTGGGCGACACTGGGGCTAGGTCGCAGAAGCGCGATATCTAAGGAGGGGAGTATGAGCAGGAGCTTGCTGGAGCAGTTGCGAGAGATGACGGTGGTGGTGGCCGACACGGGGGATATCAACGCCATCGAGACCTTTAAGCCGCAGGATGCCACCACCAATCCCTCTTTGATTACAGCAGCCGCCCAAATGCCCCAGTACCAGGGCATTGTCGATGAGACCTTGCTCAAGGCCCGCCAAGACCTGGGATCCAAAGCCGACACCAAAGCCGTGGTGGCCCACGCCATCGACCAACTGGCGGTGGCCTTTGGCGTGCGCATTTTGTCCATCATCCCCGGTCGGGTTTCGACGGAGGTGGACGCCCGGCTCTCCTACGACACAGCAGCCACCGTGGCCAAGGCCCGCCATCTCATCGAGCTCTACAAGGCGGCAGGGGCGGATCCCAAGCGGGTGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //