Array 1 94497-96924 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWP01000005.1 Pasteurella multocida strain HND14 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94497 28 100.0 32 ............................ ATGACGACGAATTAAATCATCATCAGAAACAA 94557 28 100.0 32 ............................ TTGACTTCCACCTGATCTTCAATGAGCACTTG 94617 28 100.0 32 ............................ TTGTGTTCTTGTTGAGATAATAATATGCCTTC 94677 28 100.0 32 ............................ TGTAAGAACGTACCAACTCTTTCATATTTTTT 94737 28 100.0 32 ............................ AAGACAGGGACACGTAGTGTTGAATACGTATA 94797 28 100.0 32 ............................ ATTTTCTCAATTCACGCATAATCATTTCAAAT 94857 28 100.0 32 ............................ ATTAATATTTGGCGCTGTGATTGTGCTATTCG 94917 28 100.0 32 ............................ TCTCTATTCTTAACTCCGCTATTTTTATCACG 94977 28 100.0 32 ............................ TTAATTCTATTAACTTTAGTTCATGCAAGTAG 95037 28 100.0 32 ............................ ATTAGCCTGCACGTTAACGTGACTAACTTTAT 95097 28 100.0 32 ............................ CGTTGCGATGTTGCCGAGCTCGAGTTTAGGTT 95157 28 100.0 32 ............................ ACCACTTATCGGGCGCGATTTTCTTCACGGAA 95217 28 100.0 32 ............................ GCATTTTTCAGCCACTCTTGCCATTCAGTATT 95277 28 100.0 32 ............................ AAGAACAACACCATATATCGCATGACTTATGC 95337 28 100.0 32 ............................ AAGTAATGTTTTCCGATCTTCTTCGGTAACTC 95397 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 95457 28 100.0 32 ............................ ACACCAGTCGATCCGGACAAAAACTTACTCAT 95517 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 95577 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 95637 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 95697 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 95757 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 95817 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 95877 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 95937 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 95997 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96057 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96117 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 96177 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 96237 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 96297 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96357 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96417 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 96477 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 96537 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 96597 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 96657 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 96717 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 96777 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 96837 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 96897 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15753-16140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWP01000007.1 Pasteurella multocida strain HND14 Contig007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15753 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15813 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15873 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15933 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15993 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16053 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16113 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //