Array 1 666236-667590 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061021.1 Streptococcus thermophilus strain 24739 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 666236 36 100.0 30 .................................... TGTTTAGTTAAGTCGATGTTGTGAGTGACT 666302 36 100.0 30 .................................... AGAAACGAGAAAAAAGATAAAAAAATTTTA 666368 36 100.0 30 .................................... AACCATCATTTGATGCTGCCATGTAGTTAT 666434 36 100.0 30 .................................... AATAAGGAGGAAACCTCTGTTCTTTCAATC 666500 36 100.0 29 .................................... CTTGCAGAGATGCACATGCAGTTAAATAT 666565 36 100.0 30 .................................... CTTACTATGACATGTTCAAAAAGCAACTTC 666631 36 100.0 30 .................................... ACTGAATAGCCAGTTTCACTAGTGTTATCA 666697 36 100.0 30 .................................... CTATCATCCGTGATATATAATATACATATA 666763 36 100.0 30 .................................... AAATGTCTCTAGCAACGATATTAAGCTATA 666829 36 100.0 30 .................................... ATTCCAGTATTGAAAAGATTAGATGAAGTA 666895 36 100.0 30 .................................... CGTGTCGAATATGACGATAATGACGATGAC 666961 36 100.0 30 .................................... CTCCTCTTAAAAATTATAAAATTTCATAGT 667027 36 100.0 30 .................................... GAAGAGAAGCAAGAGCAAATTGAAAAGATT 667093 36 100.0 30 .................................... TCATATATCGTCATTTGTTCTACTTCATCA 667159 36 100.0 30 .................................... TAATCCAAAGAAACATAAATGCTAATGAGC 667225 36 100.0 30 .................................... TTCATTGTTTGTTTACTCCTAATTTTTCTA 667291 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 667357 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 667423 36 100.0 30 .................................... AATAGATAGTGAAACTGATACCGTCACTGT 667489 36 100.0 30 .................................... TGGAAAATAGTTAAAATAAAGAAAGGAAGT 667555 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1455065-1453446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061021.1 Streptococcus thermophilus strain 24739 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1455064 36 100.0 30 .................................... TTAAGGCCTTATCAGACCACACTAAGAAGA 1454998 36 100.0 30 .................................... GAATCATGATTGGTTTATCTGTGGGCTTCA 1454932 36 100.0 30 .................................... AAAGAAATTAAAAAAACCTAGCGAAGCACT 1454866 36 100.0 30 .................................... TTCGCATAAGACTTCTTCAAACCAAAACAT 1454800 36 100.0 29 .................................... GTCCATAGGTATTTCCCTTTAATTAAAGT 1454735 36 100.0 30 .................................... TAGAGATGACGACGGACTACCTGGCAAGAA 1454669 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1454603 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGCACAT 1454537 36 100.0 30 .................................... AGGTAACATTGGTTCAACAGCAGTCTAATT 1454471 36 100.0 30 .................................... TCGTTACCTTGTCTTTGCAAATCACGCAAA 1454405 36 100.0 30 .................................... AATGAAGAAGCCGATTCAAGCTCAAGGGTC 1454339 36 100.0 30 .................................... TATTTCTGTCCGATACGAAGTATCAGGGAC 1454273 36 100.0 30 .................................... TACGCCCGTTTGGATTGAACATGATAGAGC 1454207 36 100.0 30 .................................... GAGCCTACTAATGATTACATTTTGAGGACG 1454141 36 100.0 30 .................................... CCAAAGAATGGACCACCTTAATGAGAATAT 1454075 36 100.0 30 .................................... TTTCAAAATCTTCGAATAGGCAGTCGAGCA 1454009 36 100.0 30 .................................... AAAATGTACAAATTTTCATGCTAGGGAATA 1453943 36 100.0 30 .................................... TACAGCTCTTGGTTTCGTCTATCCTTATGT 1453877 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 1453811 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1453745 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 1453679 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 1453613 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 1453547 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 1453481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //