Array 1 233419-228403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVVN010000012.1 Akkermansia glycaniphila strain GP37 scaf-12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 233418 31 100.0 35 ............................... GCTGAGGTACTTTTCAACAAACTGGCTTTCTGTCA 233352 31 100.0 36 ............................... CGCGTCGATTTGCGCCTTGATGTCCCCCTGCCGCAA 233285 31 100.0 36 ............................... CACATGGAACTTTTTTGACATTTGGTAAATTAAGTA 233218 31 100.0 35 ............................... TCCCGCTTTTGTTAATATAGTTCTGGATTGCTTTA 233152 31 100.0 37 ............................... TGTTCCATATGGAGCTTTTTAGATTTTGTCCAGCGCA 233084 31 100.0 34 ............................... GCCGAATATAGGCAATCTCCAAAAAGGTTGAATA 233019 31 100.0 35 ............................... CTGCTCGGCCTGTGCCTTGGCCGCCCAGAATGTGA 232953 31 100.0 35 ............................... TTTATTGGATTGTTTTCGTCGTTCATGATATAAAA 232887 31 100.0 34 ............................... AATCGGTCGCTGGGATTAAGGGGGCAAAAGCAAA 232822 31 100.0 35 ............................... ATCAGACTCTGGCCATCCTCTCCGCCTCCGGATGA 232756 31 100.0 35 ............................... GACGACGAAACCCACCCCCTCCCCACGCGTCCCGA 232690 31 100.0 36 ............................... AACGCGCTCCTGCACCCATGCACACGCTTCACAGCA 232623 31 100.0 36 ............................... GAGAATGATGTCGATGCCGTGGGCGACGGGGTCAAA 232556 31 100.0 36 ............................... ATTTCTGAAAAAGACAGGAAAATCGCATCCGGACGA 232489 31 100.0 35 ............................... CCGCATATACTAATCCATAAGTATGAATGAAATCA 232423 31 100.0 35 ............................... TGTACGAACGCATTGAGAAGTGGATTTCCCGCTTA 232357 31 100.0 35 ............................... ATCATGAAGACAACCCGCGAACCACCATGTGTCTA 232291 31 100.0 37 ............................... CGGTGGAGGGTACCAGCTTGCGGAGGGTGCGGACGCA 232223 31 100.0 35 ............................... TTTATGATCAGAATATCGTAGAGCGGCTAAACGGA 232157 31 100.0 35 ............................... TTGGAATGGAAGGGAAGAATATAAAGGGGTTCCCA 232091 31 100.0 37 ............................... TCACGACGAATGAGAAGGACAACCACAAAGCGGATGA 232023 31 100.0 35 ............................... CCGTCCTCGATCTCCTGCGTGAGAGCGGGGAGCAA 231957 31 100.0 35 ............................... GGAGCCTTTACCGTTGTGCGATAGAGCACTTCGTA 231891 31 100.0 36 ............................... CCGCCGCCACCACGCCGTCAATGGCAAAGGGCCAGA 231824 31 100.0 36 ............................... TGGCTTGATCGTCGAAACTCCACCTTCATGTCCAAA 231757 31 100.0 35 ............................... TGTCGGAATAGGTCTCACGAAGAATTTGGGGAACA 231691 31 100.0 35 ............................... GAGAGCTTGTTGGTGGTGCTGGCCACGTCGAGGCA 231625 31 100.0 35 ............................... TTCGTAGCAGTCCCATAAGTGTATCTCGGTTAGCA 231559 31 100.0 35 ............................... CGTGACTGACGATTTTTTTGAAAACAAGGATGCTA 231493 31 100.0 35 ............................... GCAAGCCGCAACCCTCCACAACCCACATACGAGTA 231427 31 100.0 35 ............................... TTGCGCCAAGAAGGGGAAGTGGTGTTGCCAGTATA 231361 31 100.0 35 ............................... CACGCACCGGCCACCAGAGGCGGGATCGTGAGGAA 231295 31 100.0 36 ............................... CGAACACGGAAGACCGCGAGTGGAACAAACTCGCCA 231228 31 100.0 36 ............................... ATCGGGCGGCGTAATCTCCGGGGGTGGCGGTGAAAA 231161 31 100.0 36 ............................... AAAAATCTCGCAACCGCCTGAAATGAACACCGCCGA 231094 31 100.0 35 ............................... TCATCTCGCACACTCTCCGAATGATTCTATTCGAA 231028 31 100.0 34 ............................... CTGAGGCTGAGCAGAAGTGGCTCATCAAACTCCA 230963 31 100.0 35 ............................... GGCATCGGGTTCGCGGCTGGCCAGTGGTCGGAGTA 230897 31 100.0 35 ............................... TACGCCGACGCCGCGCGCCACACGACTGTCCGGAA 230831 31 100.0 35 ............................... GACATCCGGGTCAGACACCTGCGCATCGCTCGTCA 230765 31 100.0 36 ............................... GTGTATGCCTTGCCTCAGGAGAGTTCCAAGTACAAA 230698 31 100.0 36 ............................... ATGAGTACCGTGCTTTTATCTTGCGTATTCATTGTA 230631 31 100.0 34 ............................... TCTTTCGATGCCTGTTTGGCAATCTGGGCAGCGA 230566 31 100.0 37 ............................... CTCTGGCGCGGCAGGATTAAATTCTGTCGTCCTGACA 230498 31 100.0 34 ............................... GAAACGGCACATCCAGCGTCAGCCCGTCCTCATA 230433 31 100.0 35 ............................... AAAATCTCCCAAAATCTCCCAAAATCTCCCAGAAA 230367 31 100.0 35 ............................... AGGATGACGGCGGCGCATGCCCATGCGGGTTTAAA 230301 31 100.0 36 ............................... CGCTTCATTAGATCGGCCGCCATTTCCGGTGAAAAA 230234 31 100.0 35 ............................... TGAGCCCGAACTCGCGCATCAGCGCGATAAGGACA 230168 31 100.0 35 ............................... TATTTTAAGGCGTGTAATCGTCATCCATGCGGGCA 230102 31 100.0 35 ............................... ACGGGGTCGATGTCGCAGTAGGTTTCTCCGTTCAA 230036 31 100.0 36 ............................... TGGCTTCGCAACCGTTACAAATAAGATGACCCTGCA 229969 31 100.0 35 ............................... CTGCTTCACGGCGACAAAAGGCTTGTCTGCCCCCA 229903 31 100.0 37 ............................... CGAGAGGCACCCCGGCAAGGTACAGCATGGTCACAGG 229835 31 100.0 37 ............................... AATCCTGCCCCCGGTGGATTCGCTGCCAGCGGGGGCG 229767 31 100.0 36 ............................... TTTGTGTTGTTACAGCCACGAGGCTGCAAAGATGAG 229700 31 100.0 35 ............................... ACTGTCGGTAAGGCCATACCGGGTGCAAAATGCGG 229634 31 100.0 36 ............................... TTCCTTGTCCCTAATCGCTGATTTTAGAGATTCAAG 229567 31 100.0 37 ............................... AGGGCATTTGGGGATATTTGGGGAGATTTTGAAAAAG 229499 31 100.0 35 ............................... AGGAGCACCGACTCGGGACCGTAGGCGATATTGAG 229433 31 100.0 36 ............................... CGGGTTTCGCCGTTGCACTCCGTCAAGTCGGATGGG 229366 31 100.0 37 ............................... ACCGACAAACGCGCATCTACAGCGCACTTATCGAGAG 229298 31 100.0 37 ............................... CCTTTATTGCATTATACAACGGTTGTCATCTCACGGG 229230 31 100.0 35 ............................... GAGAAACAGATGTCGAACGTCGCCACACTGCTCGG 229164 31 100.0 36 ............................... AACCCCGTCCAAATCCGCGCCCGTGGCATCATGCTG 229097 31 100.0 37 ............................... ACAGGAGTTGACGGAGGAGGGGGCGACAACTGAACAG 229029 31 100.0 35 ............................... CCCCGACGACACTCAAGAAATACATCACGGGCAGG 228963 31 100.0 35 ............................... TTCAAGACGCTCCATCGCACTTTTTTACGAAAGCG 228897 31 100.0 36 ............................... GTCTCGGAGGGAGGGACGGAACAGGTTGTGGAGTCG 228830 31 100.0 35 ............................... TTCCGCGTGCTGGTTGATCACGACGCGGTTAAGTG 228764 31 100.0 34 ............................... CTTCGTCCACGTGTCCACCATGGACCACTCCCGG 228699 31 100.0 35 ............................... ATCGGGCCGCGCCTCAACATCTGCCGTAAGAACGG 228633 31 100.0 35 ............................... TCGGAGTCGTTGACGATCTTGACAATCTGCGCGAG 228567 31 100.0 35 ............................... CTGGGGACGGTTCAGAAAATGCAGCATTCCTATTG 228501 31 96.8 35 .........T..................... CTTCTCTTCTCCCGAGAGTCCTTCGAGGCCTCCGG 228435 31 83.9 0 ...............T....C..G...C.G. | G,A [228410,228416] ========== ====== ====== ====== =============================== ===================================== ================== 76 31 99.7 35 TCGCACCCCACGCGGGTGCGTGGATTGAAAC # Left flank : GTTCGTCATCATCAGCTATGATGTGGCTACGGCCACGAGGACGGGAGCCCGGAGACTGCGGCGCATCGCACGCATCTGTGAAAACTACGGACAGCGCGTGCAGAACTCCGTCTTCGAATGCAAAATCCCGCCGAACCTCTTTGTCTCCGTCAAACAGCAGCTCCTCGAGACCATGGACCCGGAAGAAGACAGCCTGCGCTTCTACTTTCTGGGCAAGGATGATGAAGGGAAAATCCTCCATGTCGGAGCCAAGAAAAGCTACGACATCGACGGCCCGCTCATCATCTGAAACATCAATCGACCGCAGGCAGGGCGCAACACGCGCGAACCCCAAGCTGTACCGAAATTCCCGGAACATCCGCGAAATCGGCAACAGCCTCGTGTTCATCAGATTGACAACAAGGACCGCCTCATCATGCTGTTAAGTAATGTATATTGACAGTGAGTTGGCGGAAATAAATGAATTGCCACTTCGACGACAATATGTTACAAAGCGGCCA # Right flank : GGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCGCTTTGTTGGGGAAGGGCCTTTTACTGAACGTTGTAGATGTTCATGGCGGCTTCGATGCCGTGGGTGGCGGCGTAACGGGCGGCATCCGCCGCCTTTTCGATGGAGACACCGAGGAGTTCCTGTTCGTCAGGGCGGAATTTGCCGAGTACGTGGGCGGTCATTTCCTTGCCGCCGGGGGCTCCTATGCCGATGCGGAGGCGGGGGAATTTGTCTGTGCCCAAGTGGGCGATGAGGGATTTGATGCCGTTGTGTCCTCCGGCAGATCCGCCGGGGCGGAGTTTGAGGGTTCCGACAGGGAAGGCGATGTCGTCGTAGATGACGAGGATTTGTTCGGGGGAGAATTTGAAGTACCGCATGAGGGGGCCGATGCTGGCTCCCGAGTCGTTCATGTAGGTTTGCGGTTTGACGAGGAGGACGCCGGGGCCTGCGGCCAGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCACGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1450391-1446735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVVN010000012.1 Akkermansia glycaniphila strain GP37 scaf-12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1450390 33 100.0 35 ................................. AAAAACTATGCCTGCTGGATTGGAGGCGCGGAAGA 1450322 33 100.0 34 ................................. TGATGCCTAACCCCCTCAACCCGCTAGGCAGCCC 1450255 33 100.0 34 ................................. GAGGGTTGACGCCGCCTTGATGCGGTCAATGCGG 1450188 33 100.0 35 ................................. ATGGATGCGGCCATATCCGGGGGCGTCATGGACTC 1450120 33 100.0 33 ................................. TTGCCGGATACGACGATACGGGCCTTGTCCGCA 1450054 33 100.0 34 ................................. TGCGTAGATACATCCTTGCATGCCATTCACCGAC 1449987 33 100.0 34 ................................. TGTCAAATATGCTGTCGCACATCGTGCGAAGTCG 1449920 33 100.0 34 ................................. TTTGAAACGAGCCCTCAATGAAGGCTGTGAATGG 1449853 33 100.0 35 ................................. TTCATTAGGCTTCTTAATTGCAATTTGGATAATAC 1449785 33 100.0 34 ................................. TTTCATATTCCGTCATGATCCAGCCAAGGCATTC 1449718 33 100.0 34 ................................. CACATGGAACAAGTTAGGCGAAGTGAAGCAGGCC 1449651 33 100.0 34 ................................. CATGTGGAACATTTCGGAAAAACTCACCAGAAAA 1449584 33 100.0 34 ................................. AGCTTGGCGAGGAATCCCTGGTCGAGTGCATCCT 1449517 33 100.0 34 ................................. CCATTCTTTCGCCCCTGCGAGGCATGCAAGGCTG 1449450 33 100.0 36 ................................. ATGGCGATCCTCGACGGCAACAAATCCGTCGAAATC 1449381 33 100.0 34 ................................. CCGCCACTCGGCGGCGTCGTACATGTGCGCCGTG 1449314 33 100.0 34 ................................. TACCTCCAGCCCGGCCGGGACTACACCGCCGCCG 1449247 33 100.0 34 ................................. CGAAGTAGCCTTTGGTTTTGCCGTGGTCGATGGA 1449180 33 100.0 34 ................................. GAGCCGCAAGCTGCTTTGATACGGAGATTGAGAA 1449113 33 100.0 35 ................................. TCTTTAACCGCCATGAGTTCCGAAAGAGTCATGAA 1449045 33 100.0 35 ................................. CACTTCTCAATGACGGCTTCAATGTCCTCACGGAT 1448977 33 100.0 35 ................................. TTGCCAAGTCATACAACTATCATCCATACGGGCGA 1448909 33 100.0 35 ................................. GGACGGACTGCTGGAAAGACAGTCTTAGTGAATGA 1448841 33 100.0 33 ................................. TTTGACAAAAAATATATCGCTAATCCAGATAAA 1448775 33 100.0 34 ................................. TGCGTCACAATCGTCACTGTATCGTTCTTGAAAT 1448708 33 100.0 34 ................................. ATCTCCCTCTGCCGAATCCGCGCCAGATGCGGAG 1448641 33 100.0 34 ................................. CTGGTCATATCGAGAAACGAACGAAGGTGTCCCT 1448574 33 100.0 34 ................................. CCGTCATCCACGCCATGCCCGGCCACGGTTGTTC 1448507 33 97.0 34 ............................C.... TATTCCTTTCGGATAAGCAAAGTTTACAATAATT 1448440 33 100.0 34 ................................. TCTTCGCCCGCAGCATATCACATCGCCCCTTGCC 1448373 33 100.0 34 ................................. GGACTGGCGAGCATTTGGGTGGATTTTCGACGGA 1448306 33 100.0 34 ................................. GGGATTCCTGACGACGGAAGACCTCGTAGCAGAC 1448239 33 100.0 33 ................................. TTCCCGCGCGGTTTTGTTGACTTTCCATCCGGC 1448173 33 100.0 34 ................................. GCGGCCCTGTAACCAGCCTACTTTGACAAGCCCA 1448106 33 100.0 34 ................................. CCCCTGACGACCGTCGAAGACCACGGCATCCCCA 1448039 33 100.0 35 ................................. CATAACAAAAACAAACTGCTCGACCAGGTCAAACA 1447971 33 100.0 34 ................................. TCATTATGGCGAATATTCCCGTCCCGGTGGTATG 1447904 33 100.0 34 ................................. ACTTTCGGCCACTCCCGAAAGGATCGAAGAGGCG 1447837 33 100.0 33 ................................. GATCCGCGCAACCGTAGTGACGTTGCTGCAGGC 1447771 33 100.0 33 ................................. GGCCTGGGCGCGGCTGGCGGCCTGCGTGGTCTG 1447705 33 100.0 34 ................................. TTTGCCCGTGATCCGTACTGACGTGCCACGCTGA 1447638 33 100.0 34 ................................. TACGAACCGGGGAGGCGTTTACGGCTCGTCAAAT 1447571 33 100.0 34 ................................. CGCCAGTGGATAAATCCAATATGCCAACAGGTCG 1447504 33 100.0 33 ................................. TTCCCGCGCGGTTTTGTTGACTTTCCATCCGGC 1447438 33 100.0 34 ................................. GTCGGTGAGTTCGGACGTGGCGACGACGATTTTT 1447371 33 100.0 34 ................................. CCCTCGTGGACGCATTGCCACATGGCGTAAAAGA 1447304 33 97.0 34 ...........C..................... CCATGATGGGGCGTCTCGAAGATGGGCCAGTCCC 1447237 33 93.9 34 .C.........C..................... CTTGAATACGTCAAAATCCATTATTTCAACGCCG 1447170 33 93.9 34 .C.........C..................... CGTATACAAGAAGGAAATGCCAAGGTCGGGAGCC 1447103 33 93.9 35 .C.........C..................... TGGATAGTGGTTTCGGCGGCATATCAGTCTTGAGG 1447035 33 93.9 34 .C.........C..................... ACGTTGATAGCGGTTCATAACACAGCCACCTTTC 1446968 33 93.9 34 .C.........C..................... CTCCGCCGCGTCAACAACCGCCGCTTGATTGACG 1446901 33 93.9 34 .C.........C..................... TCCGCGCATGGGTTGATAAAAACCTGCACCGTTA 1446834 33 93.9 34 .C.........C..................... ATCGCGCCGATCGTCCCGACGGGCGTCGCGCAGG 1446767 33 97.0 0 ...........C..................... | ========== ====== ====== ====== ================================= ==================================== ================== 55 33 99.1 34 GTCGCACTCCTTACGGAGTGCGTGGATTGAAAC # Left flank : CCGCCGCCATTGAGAAAAATGAGGAAACCAAGGTCATGGAAACGCGCCGCCTCCGCTTCCACTGCGGTTGCACCATCGACAAAATCCTGCCCACAATTCGGACGATGAAAAAGGACTTTGCCGACCTCCTGTCGGAGCAGGGCAAGCTGGACATCACCTGCCCCCGATGTGCGGCTCAGTATGTTGTGACTCCTGACATGCTGCAGGACGGCCCCGGTGAGCGGGAAGAAGAATGAGGCCGCTCGGGTACGATTGAATGCTTGCACCCGGAGCTGTCTCATCGTATGATTTCATGCGTGGCGGCTTCCCTGCTGCCATGCTGCGCGAACCCCAAGCTGTGGCGAAATTCCCGGGAGATCGGCGTATTTTGCAGTTTGCTCAGTATAAGGATGTTGAGAGAATTGGTGCGAAACCTCTTCCGCGAAGTGACGTATCACGGAAGCAGGTTCGCGAAAATGCAAGCATGGACAAGGCTGTATCAGCATGTTATGGTATTGGCG # Right flank : ATGTCCAGATGCACGTCGTTGAAGGCCACGGAGTACGTAGGTCGAGTCAATATGCCGGTCGCTGGTGTTTGGGCAATACTGTTGGGTTGCCGGAATACCGGCCTAAAACTTTGTTGCATCTGCCATATTTTGATTGACAAATGCCGTGTGGAAACCTATATTCCTTGCCCCTGCTGATGCTGTTATGATAACAAAGGGAAGCTCAGGGCTCAAGAACAGCACTTTCCACCACCCGCCCTCGCCTGCTTGAAGGAAGGGCAATTCATACACATATGATTAACGAACTCATCACCGAGATGGTAGAAGCTGGCGTCCACTTCGGACACCAGACCCGCAAGTGGCACCCCAACATGAAGAAATATCTGTTGGCAGACAAGAACGGTATCCACATCATCAATCTGGAAGAAACCGAAAAGTGCCTCGATAAAGCTTGCGAATTCCTCGCAGACCTTTCCCGCCGCGGCAAGAAGATTCTCTTCGTCGGCTGCAAGCGCCAGGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1465914-1464393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVVN010000012.1 Akkermansia glycaniphila strain GP37 scaf-12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1465913 33 100.0 34 ................................. GTGAGGGTGTAGTCGGAGGCGATGAATCGTTCGC 1465846 33 100.0 36 ................................. CGGAATACGCATCAATCCGAAGGGAAAGTCTGGATA 1465777 33 100.0 35 ................................. TCCGCGACGGCGGGCTTGTCCGCCCCCGTCCTCAC 1465709 33 100.0 35 ................................. AACGCCGATCCGCACGCTACGTCATCGGTGATGAA 1465641 33 100.0 35 ................................. CGTAACGAAGCCGCGTAAATCCAAGTAGAGGGCCG 1465573 33 100.0 33 ................................. AAGAACAAACTGGGAGAAGTCACCTCATGGCTC 1465507 33 100.0 34 ................................. AGTTTCTTGACGGCTTCGACGTCGTGGATGGCGA 1465440 33 100.0 34 ................................. GCAAACTTTGCAAATTATCCAGCCGGGGCGGCGG 1465373 33 100.0 34 ................................. ATTAAGTCGGAAGCGAGTGACGCGGGGCATTCCA 1465306 33 100.0 34 ................................. CTTGACTCCGGCGGTGAAGGTGACGGGTTCGACC 1465239 33 100.0 34 ................................. ATCCTCTAATCTGTGATCATCTGTGCCATCTGTG 1465172 33 100.0 35 ................................. GATTGGTGTATGCCTGATGACGAGGATTGGTATCG 1465104 33 100.0 35 ................................. ATGGGCTTCGGCGGATGCATCTACATCTACCGCGA 1465036 33 100.0 33 ................................. CCGGCACCCGTGGCGAACTTCTTCAGCGTCGGC 1464970 33 100.0 36 ................................. CCTGCTGATGAATATGGGCCACACCACCAGCCGCGC 1464901 33 100.0 34 ................................. GCCACCAGCGCATCCAGCCAGCGCAGCACCTCGA 1464834 33 100.0 34 ................................. TTCCATGCCTCGGAAAACCCCGGCCCCATGCTCA 1464767 33 100.0 35 ................................. TTCTGTGGTTGTGATAGAGTGGTTACTCGCCTCGA 1464699 33 100.0 33 ................................. GGACAGTACATCGGACATCGCCGCCGTGTCCGG 1464633 33 100.0 34 ................................. GGCGGCAGGTGCGGATGTATTTTTTTCGGATGCG 1464566 33 97.0 35 ..........C...................... TCGTATGCCAGCGGTGCCACAACCGGCTCGACCTC 1464498 33 100.0 37 ................................. AGGGCTGGATTACCGAGCCTCCATCCATAGCGTACCT 1464428 33 78.8 0 ..........C...........G...G..TTTT | A,GC [1464395,1464400] ========== ====== ====== ====== ================================= ===================================== ================== 23 33 98.9 35 GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Left flank : ACAATGAAACGGCGCAGTATGCCTATGACCCTGCGACGGCGACTGGGTGGGAAGTCACTTCCATCCATGCGCTCACTGCACCGCTGAACTTGGCGCCCGAACCGTCCGCCGCCGCTCTGGCTTTGGCGGGATGCCTCGCCGGGATGTGGAGAAGGCAGCGGAGAGTATGAGGCTGAGTCTCCTGCAGCAAGGGGAAAGGACAGTGTGGCAGCTTGTGAAACGGGCGGTATTTTGCGGCGGCTGGGCAGGCGATTGATGGAAAAGACTTGCCCATCGTCGAGACCTGCTCTACAATTCTGAATGTCAGGAATGGCCGCCGTGGCGCGAACCCCAAGCTGTGGCGAAATCCCCGGGAGATCTGCGAAATGCGTGATTCGTTGGGAATCAGAAGATTGAAAGGACTGGCGCGGGTGCGATCGTCTGCTTTTCGGCAGTACGTCAGCAAGTCCGCGCAAATGCAAGCATGGACAAGGCTTTATCAATGTGTTATGGTCTTGGCT # Right flank : TACCTCAGGCCATTTCTTCGTCATGGATGCCGCTTTTCATTTTGCGGCGGAAGAACCATGACAGGGTGATCCATGCGACGGCGGAGGAGATGAGGTCTGCCGTGGCCATGGCGAACCAGATGCCGTTCTGCCCCCAGAAGGTGGGGAGGACGAGCAGCAGAGGCACGAGGAAGATCATCTGGCGGGTGAGTGAGAGGAAGATGGAGATGCGCGCCCTGCCGATGGATTGGAAGAAGTTCCCGATGACGATGGGGGCGCCGATGAGGGGGAAGGCCAGTGCGCTGAGGCGCAACCCGCGTTCGGCGATTTCTTTCAGTTCGGCGTTGTCGGTGAACATGCCGGCGAGCAGGTGCGGGAAGAGTTCGCAGGCGAGCCAGCCGAAGGTGGTAATGCCGGTGCCGGCGATGATGCCGTAGCGGAGAACCTGCCGCACACGGTCGAGCCGTCCTGCACCGAGGTTGTAGCCTGCGATGGGCTGCATGCCCTGCGTGAGGCCGATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //