Array 1 2087298-2085475 **** Predicted by CRISPRDetect 2.4 *** >NC_015738.1 Eggerthella sp. YY7918, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================================== ================== 2087297 32 87.5 33 .....A.....TA......T............ CTCCCAAGCGCCGCTTCTTTCATTAGGTGGTTC 2087232 32 96.9 34 ...A............................ TCCCCCGACGTGAACCAGGACGACGAAACGCACA 2087166 32 100.0 34 ................................ ATCTCGTCCGCAGAAACGCCAGCCTTGTTAGCCA 2087100 32 96.9 36 ..................A............. GCCGAGGGATCGTCGACGGTGCCGACGTCCACCGTG 2087032 32 96.9 34 ...A............................ GACCGGGGATACAGAATCCCACGCTTCTTGCGCG 2086966 32 100.0 34 ................................ CACATACTCTCCCGGCCTTACGAAATGGATCATT 2086900 32 100.0 35 ................................ GACGACAACGAGGATTACCTAACGGGTATCCCGCG 2086833 32 100.0 35 ................................ TTGCGCTGTTTGGCGGCGTTCTCGCGGCCGATCTC 2086766 32 96.9 34 ...........................A.... ATGGGCTTGGGTGTCCCGTTATCGTTTTTGATGT 2086700 32 100.0 36 ................................ AGCAAAGGCACGGCGCTCGGCCGTTTTGCCCAGTCG 2086632 32 100.0 34 ................................ AAGCACGTCCGGCTCGAAAACATTCTCAAGCGCC 2086566 32 100.0 34 ................................ ACGACCGGCTCGGATGTTCTGCGCGCCATCCGCT 2086500 32 100.0 35 ................................ GGTACTTTACGAAGCGCGATAAGCGGAATCGTTAG 2086433 32 100.0 35 ................................ CATGAGCAGGCACGCCGCCGTCAGGTCGGTGGTGT 2086366 32 96.9 33 .............T.................. AACGAGCGGCAAAAGCTCGGTCGGCACATCGTT 2086301 32 100.0 35 ................................ ACCGACGCAATGGCTGTTGTGGATGGGCTAGATTG 2086234 32 100.0 34 ................................ GTCGATCGCGCCGAGGACAAAGCCGCTTGGGATC 2086168 32 96.9 34 .........................C...... GCCAACCAAGAAAGGAGGACAAGTAATGGCCGCA 2086102 32 100.0 34 ................................ TTATCGCTGCGTGCAAGTTTGCGTGCTGCGGTGC 2086036 32 90.6 35 .......T...T.......T............ ATGTGGATAATTTCTTGGACTACCTTCTCGATGTT 2085969 32 93.8 35 ........T....T.................. CCTGCAATCGTAGAAGACGAAAGCACCTTACAGGG 2085902 32 96.9 35 ..............A................. CAGGGGGCCTTCGGCGTTTCAGGAACTTGGGAGTG 2085835 32 96.9 35 .......T........................ ACCATGGCCACCGACGCCGACGGGCACTGGCGCAC 2085768 32 87.5 37 ................GG.T...........T ATTTTTACCGGCCTGGTCTACGTGTACGCCGATTCAA A [2085749] 2085698 32 75.0 35 ...A.TC...A.A...GG.T............ AGCACCATGTTGCGCGCCTCGTCGTGTTCCAGTAT A [2085680] 2085630 32 78.1 91 .....A...T............A...A..CGG TCAAGGGCGCTCTTGATCGATTCGCCGCTCCCCACATAGGGAGTGCGGGTTGAAATTTGTCGAGGACGAAGTGGGACGCGACGACGACGGC 2085507 32 71.9 0 ...A.TC...A.AT...A.........C...T | G [2085490] ========== ====== ====== ====== ================================ =========================================================================================== ================== 27 32 94.8 37 GTCGCGTCCCTCGCGGACGCGCGGGTTGAAAC # Left flank : TTGCCCGGTACCTTCGAAATGATCTTGACGGGTATCCTGCATTTCTCTGGAGGTAATAATGTACGTGTTGGTGACATACGACGTGGCGACCTCGGATATCGGCGGGGCGCGATGGCTGCGGAGGGTCGCGAAGGTGTGCTTGCAGCACGGACAGCGAGTTCAGAACTCGGTGTTCGAGTGCTCGGTCGATCCGGGGCAGTTCGATCAGATGAAACACGAGCTGTTGGAACGCATCGACTCCGAGAAGGACAGCCTGAGGTTCTATCATTTGGGAAAGGGTTGGCGTAGCAAGGTTGAACATGTAGGTGTAAAGCCGAGCTACGACCCTGAAGGGTTTTTATGCATTTAGGGTTGCGCGAACCTTAAGTGATGATGCTGTATTCGCGAGGTTCGCGCAAAAATACAGAGTTTAAGTTGTTATTAGTTAGGTATGGGGTTGTGCGCACCTTGATAAGTACATAGAAGTTAAGACATTATGCATTACTATGCATAATGTGACA # Right flank : TCCATGAACGTCGTGTTCCTACTCATCAGCTACAGGTACTCCTCGGGGAAATGCGAGTTCAAATCTCATCATGGGGCCTGGTGTCGATCAGTCTCGCCGTTTTCTGCAAGGGAAGTGCGGGTCAAAAGTAAACGGGTCTCTTGTCGTCAACCCTTAGAGCTTGATAAGCGCTGATGTATGCTGGTGTATACTGCCAGATGGTGCGCCCACGAACTAGCCTTACGTTGGGCGCGCGGTATCTCATCACCGTGAAAAGGACCCTTATGCTGGCATCTATGTACAACCATGCGCTCGACTATGACAACCTTTGTGCGCCGAATGCGTCTCAATGCGTGCGAAAAGCTGTCGTCAAGGTTCGAGCTTAATTGCTGACGATGCCCCATGAGCAAGACAATCCTTCGTTCTATCTTTATGTGCTCGAATGCGCTGACGGCACTTGGTACACGGGTTATACGGTAGACGTTGCGGAACGCATAAAGGCTCACAACGCCGGGACAGGT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCTCGCGGACGCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.50,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [38-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2677116-2677941 **** Predicted by CRISPRDetect 2.4 *** >NC_015738.1 Eggerthella sp. YY7918, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2677116 36 100.0 30 .................................... TAGGCGGTGACCGGTGATGCGCCTGGAAGA 2677182 36 100.0 30 .................................... GGTGATCGAAATCTGAACCATACAGAGCAT 2677248 36 100.0 29 .................................... CTCTTGTCTGTTATGCCGCCGCCGGCGTG 2677313 36 100.0 30 .................................... AGCTTCTTTAATACCCAATCTTTCGCCTCT 2677379 36 100.0 30 .................................... TCACCGTACGGCGGCTGAACACCTGTCAAA 2677445 36 100.0 30 .................................... CGAACCCCGCGCCGTCCGCCAAGATGTAGC 2677511 36 100.0 29 .................................... CGGGCGATCGGGGACGTGGCCCTCTCGAT 2677576 36 97.2 30 .....T.............................. GTATTGATGGCCCTGTCCAAAAACTCGTCC 2677642 36 100.0 30 .................................... CACTCCGTCAGATCAAGCGGCTTGCCCTCA 2677708 36 100.0 30 .................................... CAGGCTGTTCTCGCTCAGGCTGACGCGGCT 2677774 36 100.0 30 .................................... ATCTTGCTCCAAAGGTACGTCAACCTAGTG 2677840 36 100.0 30 .................................... CCATCATCGCATATCAAGAACTAAAGGACG 2677906 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC # Left flank : CCCCTTGCCGAATGCTCCAGACGAATTAAAGCGCGAGGCGAAGTTGTTGCAATCCATTCCGAAACCGCAACAACTTCCGTGATCTGTTAAGGCCCTCTTCGGCGGGCTTTTTCTATTGCAGCAATTTTGCATACATTAGCACACAACTCCTCCATGAGCGTAACGTCAGAGCGGAATTGATTCGAGTCCTATATTCCACTTTTCTGTATCAAAGTCGTGGCTATTGTTCAATCGGGAAAGATCATTCCACTCTTTCGGAATACACATCTCGACCATAGAGCAGTCAGTGGGCGACAGGTTGAGCATGATGTTCATGGCGATCATAAAGTTTACAGAGGGTGTTTGTTTGCCAGTCTCTAGTCGATACAGGGAGTCTTTTGAGATGGAAAAACCGGTCACGTGCTCCATGGCTTTTACGAAATCTTCTGCTTTTCGGTAGCCAAGGTTAAGCCTACTCCTGCGAATGAGCATGCCGTAAAGTTCGTTATCGATAGTAGGTT # Right flank : CAGAGCAAACAGCAGATCATGCCCATGCCGGATGCGACTGCCGCATAGTGCCGGATTTCACCGGGAAAACTGTTGTCGAGGGCTACGATGCTGAAGCTTTGCTTGACCAGTATAAGAGCGCACGTAAGGCCGTCGAAGCTATGTTCTCAGAAAAGGACTGGACTTATCTTGATAGTAAATTGAAGACAAAGCTTATCGTGCGTGAGCTTAAGCGTCAGATGGACGATTCAGCAATGCGCGAGATATCGGGAGGCTTAGGCGGTGGAATAGGTAACAGGTGGTTCAAGAATTATCAAAATGAAGTCTTTTCCGTGACTAAAAATGGTGAAACGCTATTCGAGAAAGAAGGAGATCAGAAATCAGTTGATTTAACTGATATAGAGCTAGCGAAGATAAAGGATTGCGATATTAGCCATACTCATACGACTCCGGTAGGTGGAACATTTAGTTCTGAAGATATTGAAGTCACAGTTGTTGGATGGGTGCTATCGCATACTGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 2682491-2679629 **** Predicted by CRISPRDetect 2.4 *** >NC_015738.1 Eggerthella sp. YY7918, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2682490 36 100.0 30 .................................... TTTCGATTCTGCTCGATGTGCATGAAAAGT 2682424 36 100.0 30 .................................... TGGTGACCGGAAGGTCAGTCGTGGTGCCGG 2682358 36 100.0 29 .................................... AAGGTGTATGCGGACGTGTACATGGACGA 2682293 36 100.0 30 .................................... GTCGTTCACGACGTGGCAGGGCGGACTTTA 2682227 36 100.0 30 .................................... TCTTGACGGTCTTCTTGATCTCCTCGCCCG 2682161 36 100.0 30 .................................... CAGACATTCGTTGCAACCCGAATGAGCCAG 2682095 36 100.0 29 .................................... AAGTAAAACGTACTTATCGGTTACGCCGA 2682030 36 100.0 29 .................................... CGGAAAGAGTGCCATAAAAGCCTGCGAAG 2681965 36 100.0 30 .................................... AGCGCTTTAAACTTGCCGTAGCACTCGGCG 2681899 36 100.0 30 .................................... TGATGCAGCGCACCGCATCTGTAATCAACG 2681833 36 100.0 30 .................................... AGTGTAACTGTGATAGGAATACTAGACGCA 2681767 36 100.0 30 .................................... CGCCATTGCATGCCTTGCAAGTACGCCATG 2681701 36 100.0 29 .................................... CTCTACGTGCTTGTATTGTTGACTGACAA 2681636 36 100.0 30 .................................... GCACGCGCGTCTACTCCGGGGCGTTGGATC 2681570 36 100.0 30 .................................... AGAGTCGATGAATGCGTGGGCTGACAAGCT 2681504 36 100.0 30 .................................... ACACACCACGAACGGTGTCGCCGAGCCCCG 2681438 36 100.0 30 .................................... CGGGCGAAGGTGGTGGAGCGATGACGAGCC 2681372 36 100.0 30 .................................... CAACGTCGTAGCAGCCCGCGCGCTCATTGA 2681306 36 100.0 30 .................................... TGGTCTTGGTCTATGTAAAAAGCAGTTATC 2681240 36 100.0 29 .................................... CTGACAATATTCTTGGTGTACGAACCGGA 2681175 36 100.0 30 .................................... CGTGCAATTGATCGAACAAATTCAGTCAGC 2681109 36 100.0 29 .................................... TGAGGAAGCGCCCAGAGTATGCGATACCG 2681044 36 100.0 29 .................................... TCACTACAGCAATAAACGGATTATCTTTA 2680979 36 100.0 30 .................................... TTCGCGAACTTTCTAGTCGTGATAGTGTGG 2680913 36 100.0 29 .................................... TTGTTCGGCGTATCCAACGAACAAGTCAG 2680848 36 100.0 29 .................................... AACTACCACTAGCTCATCTACCGCGCGTG 2680783 36 100.0 30 .................................... TCCGATGAACACGCCAGCACCGTCGAGCTC 2680717 36 100.0 29 .................................... TGCATATGACGTGATAAAAGCACCGGCAG 2680652 36 100.0 30 .................................... CGGCCAAGTCAAATCGCACCGCAGTGTTGC 2680586 36 100.0 30 .................................... TAGCGAAAAGCACCAAAAAGCGGTGGTTTC 2680520 36 100.0 29 .................................... AACTCTTTATAGTTCATGAATCTACTCCT 2680455 36 100.0 30 .................................... ATGAATGTCGTTCCGCAGCAGATCCTCTCA 2680389 36 100.0 30 .................................... CGGATCGAAGTTTGCATCAGGCGTTGGAGA 2680323 36 100.0 30 .................................... TAATCGAATAGCCCGGAAGACGGCAGCAGA 2680257 36 100.0 30 .................................... TGCCGTTGCGCTCCGTGATGCCGATATCGT 2680191 36 100.0 30 .................................... CGAGGAATCGGCCAAGACCGCCGAGGGTCG 2680125 36 97.2 29 .........T.......................... GAGTGCATGATGGCACGTATCAATCCACG 2680060 36 100.0 30 .................................... TTCCCAGGCATGCCGCCTCGAGAAACTACC 2679994 36 100.0 30 .................................... AGAGCAGCCGCACCTTACCCCCAAGCAGGT 2679928 36 100.0 30 .................................... TAAGGAAGATCACATACCATGCTTGCAACT 2679862 36 100.0 30 .................................... TGAACATAAGTGAGCCATGCTCGCTTCGAA 2679796 36 100.0 30 .................................... AGCCGCGTCAGCCTGAGCGAGAACAGCCTG 2679730 36 100.0 30 .................................... CCTTCCCAGTCCTTGTAGGACGTGCTGACA 2679664 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 99.9 30 GTTTTGGAGCAGTGGAATTCTGACTGGTAGTCAAAC # Left flank : AGCTTTTGGGTGGTCTGTATCAACGCTACGAAACTATGCTGCTTGAAGACTACGAAATGCGCGACAAACTATCCCAATTGACCAGAGAAATATCGTCAAGTATCTCACTGCTTGGATTTCAATTGGCTTCAAATTGTGAGTTTGAGATAGAATGGGATATGCGGCGATACTTAAAAGCATTTGGTTTTGGAGTAGATTTTGATAGCCGCGATTCGCTCCTTGATAATGTAATAAAGTTCATTCATCTGGCTATGGACGTGTCATTGCAGCGAGCGCTGGTCTTTGTGAATTTGAAAACATTTTTAACAAAAAATGAGCTTGAAACACTGTATGAGCAGGTGATTTTTTCGCAAATCCCCTTACTTCTTTTGGAAAACAGAAAAGACTGTTACTGCAGTGATTACGAGATAAAAAGGTGTGTTGACCAGTACTTTCTTGAAACTTGAATCAGGAAAGAAATAGAATTCCCGTTCTCACGCAGAGAGAATTTTGCTTCAACG # Right flank : GCCCGATCCTCCCATTTGCGCGATTCGGCCTTCCAATCAATGTCGCCCTCGTTGCCGTGCGGCTCGGTAGGCTCAACTGTCGGATCGATTTCATCTGCCATGGGTCAACTCCTTTTCTCCCGTGCGGGACTTAGGCACCCGTGCGGGTGCGTGAAATAAAAAAGCCCGGACGAATCCGGGCATGAAAAAAGCGCCGTACGGCGCTTGATTCCTAAAATGGGCTATTGAGTTTTAGGTGTTACGCAACGTTTTATATTCCAAGATTGGCCTTGATGAGGCTTGCCGCAAGGGTTGAGCATACATCCTTGATGACTCCCAGCGACGTTTCCCCAACAGTATCCCTTATCGCGTTGCTTGCCTTGGACCAAACCTTCGGGCTGCGTATCGCGTCAAGATAGTCGAAACCGTCCCACGAAAGCCCCTCGACGGTCGCGTTAACCGCTCTTCCGCTTGATGTGTATTGGGTATTCGCTCCAAAAAGCAAGCCATGACTATCCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGGAATTCTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //