Array 1 49-2190 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIM01000008.1 Listeria monocytogenes strain FSL L7-0627 NODE_8_length_182787_cov_16.797734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49 29 100.0 36 ............................. TTTATATTCCTTCTCTCATTATTATTTTTTGAAAAC 114 29 100.0 36 ............................. TGAAGTGAATATGAATGAGAATTCAATTCTAACAGC 179 29 100.0 36 ............................. GACAAACGTAGCATGGTGTCCGATTCTCGAATCCCC 244 29 100.0 35 ............................. AAGCCCCGGTAATAACATTCAAACTCATTTTTCTA 308 29 100.0 36 ............................. GAATTATTTTCAACTTTATAACTTATTTTAACTACA 373 29 100.0 36 ............................. CTAGTTTCACGGAAGGTACGTAGATGTCAAATCTTT 438 29 100.0 34 ............................. GAGCTTAGTAATTTGCAACAAGAAGCAATAACTA 501 29 100.0 35 ............................. CGATATTGAAACCCTTCTAAACCCGGTTGCATTTC 565 29 100.0 34 ............................. CTTTGAACCAGTTTGCTAGAATTCAATGCGATTT 628 29 100.0 34 ............................. AAACTTTCCTTTGCATTTTCGAGAGTTGAAATAT 691 29 100.0 34 ............................. AGGAACATTTACGCTGCAATTTGAAGTCTTTAAA 754 29 100.0 34 ............................. ATACTTCAAATTCGTTTCTTAATATCGAAATTTG 817 29 100.0 36 ............................. ATAATCACTGGATGTTTCAAAGCTGCTCCGGTTCCT 882 29 100.0 36 ............................. AGGCTTTTTCAATCGTTATTTCTGTTCCTTTTTTGC 947 29 100.0 36 ............................. GTGAAAATTAAATCCGCGAAAGATTTACGGATTCCG 1012 29 100.0 36 ............................. AAATTTTCCTCGTCGAATATATCCATCGCCCATATA 1077 29 100.0 37 ............................. CCTGAAACATAACAATACTGATCTAGAATTTTAGAGT 1143 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 1206 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 1271 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTACCACTGCCGAA 1335 29 100.0 36 ............................. TCCTTACTCGCCTCCTAGCACCATTTCGGTAAGTTC 1400 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 1463 29 75.9 22 ..................CGG..TC.TT. GCTGGTTAGGTCGTTTGTTAAG Deletion [1514] 1515 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 1580 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 1645 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 1709 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 1772 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 1838 29 100.0 36 ............................. ATGTCTACGTGCCCCAGTCTCTCTTGGATTACTTTG 1903 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1967 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 2032 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 2095 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 2161 29 93.1 0 .......................A....C | C [2184] ========== ====== ====== ====== ============================= ===================================== ================== 34 29 99.1 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : TGAAATGTAAATTGAAGTGAATATGAATGAGAATTCAATTCTAACAGCG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGTGTCTGCACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 171895-172506 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIM01000007.1 Listeria monocytogenes strain FSL L7-0627 NODE_7_length_190775_cov_19.148743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 171895 29 100.0 35 ............................. TGAAATGGATCCGGAAACAAAAGCGAAAGTGGTTA 171959 29 100.0 36 ............................. TTTTGTAGTGTTGATAGTGTGTATAACAATTCACAC 172024 29 100.0 36 ............................. AAGTTTTCTTGCGTAATGTTTTCCAAAATCTTGTTT 172089 29 100.0 33 ............................. TGGAACACATGAATAAATCAAACGACAAATCGG 172151 29 100.0 36 ............................. GGAGAAGGATATCTTCACGCCATTTTTTGGGGTCAA 172216 29 100.0 37 ............................. GATAATAACGAAATAAGACCGAGATTAGTTTTCCGGC 172282 29 100.0 37 ............................. TCATTAGTTCTATTTTTTGTCTAGCAACCTCACACAA 172348 29 100.0 36 ............................. GGATTAATTGCTAAACAACCAAACGGATTATATTGT 172413 29 96.6 36 ..............A.............. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 172478 29 79.3 0 A.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGTTGGGGGAAGATGAGTTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 189344-190727 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIM01000007.1 Listeria monocytogenes strain FSL L7-0627 NODE_7_length_190775_cov_19.148743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 189344 29 100.0 36 ............................. TCAGCACCAGCGAACTCGTAAAAAGTTGTGCTTAGC 189409 29 100.0 36 ............................. GTGAAAATTAAAAGCAAGGACGCTTTACGTATTCCA 189474 29 100.0 35 ............................. AAAAACTTCTATCCTCTAATATTTAATTTATTCTC 189538 29 100.0 34 ............................. TGCTTTTTGGAACTGCTTCGCTGACATGCCTGCC 189601 29 100.0 35 ............................. TATGGTATTAAATACAAAAAACACGAATATTATCA 189665 29 100.0 35 ............................. AATAATCGTTTTACAAAAGTCGAACAAGAAAATTT 189729 29 100.0 36 ............................. CAAACAATCGTCGCTAGAATTATCGCATACGATGAT 189794 29 100.0 35 ............................. TCCGAACGAACCAGTTAATGCAAGCAATCATCAAA 189858 29 100.0 35 ............................. ATAATTATCTAGTAATTCTTTCTCTCTCAAACTTA 189922 29 100.0 36 ............................. ATCATAATCGGAGTTAATAAACGGGTCTGTAACTGC 189987 29 100.0 35 ............................. CAGTCATGTTCTAACCACTCCCCCGCCGCTCAATT 190051 29 100.0 36 ............................. TAACTATTTATACCTCCATTTTTTTAATTATTTTAC 190116 29 100.0 37 ............................. ATCGAATGGAATCAGCTCTTAAAAGTGCTCAAATAAC 190182 29 100.0 35 ............................. TCTCTGTTAATTTGTCAATGTAACGCAACTTAAAA 190246 29 100.0 37 ............................. ATACACCTCGAGTTACTGGCAAAGGTCAAATATACCT 190312 29 100.0 35 ............................. GTTCTTGAGAATTTTATTAACATAGGCGTAATTTC 190376 29 100.0 35 ............................. TTTAGACGCAATGCCTTGTTCTAGTGCGGCCTTTT 190440 29 100.0 35 ............................. TGCTATATTTAGTCATTTCATGTTTCATAATTACC 190504 29 100.0 35 ............................. CCTTCTATCTTGTTTAACGCAATATTCAATGCTTT 190568 29 100.0 37 ............................. TAGTTTTCGTAAAGCTCAGAACTGCCGGCGTTTGAAT 190634 29 100.0 36 ............................. TAGACCTCGAAAGAGCGTTAGCGCTTTTTGTTCGCT 190699 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 22 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTTATATTCCTTCTCTCATTATTATTTTTTGAAAACGTTTTAACTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //