Array 1 146924-148257 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPV01000031.1 Acinetobacter ursingii strain blaTEM-116 Acinetob.ursingii_TEM-116_contig_31_cov_133.55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 146924 26 100.0 34 .......................... AATATACTAAACCGAAGAGCCTTAAAACACGGGC 146984 26 100.0 34 .......................... TGTAATCGTTGTAAAAGATCTGGATTTTCGTCGC 147044 26 100.0 34 .......................... AGAAAAAGATGATACTGACTTAAATATAACCAGC 147104 26 100.0 34 .......................... TGATAAGTTTTACCTGAGTATTGAATAACATCGC 147164 26 100.0 34 .......................... ATTGGTTGAAAGCTAGAACAGCTGGAATGAGTGC 147224 26 100.0 34 .......................... TATTTTAGACCCCATGTATCCGACTGCAACCGGC 147284 26 100.0 34 .......................... AATTCCAGCAATCGGAGCAGCCAAACCTTGAAGC 147344 26 100.0 34 .......................... TGTGGAGTATCCCTCTGATATTGCAAAATGTTGC 147404 26 100.0 34 .......................... AAACGCAATTCTAATGATGTGAAATTGCATAGGC 147464 26 100.0 34 .......................... TGAATTGAATCATCGTCACCGCACAATACTTGGC 147524 26 100.0 34 .......................... AGAACGTCTCAGTCATTGAAGATCATCAACACGC 147584 26 100.0 34 .......................... TTTTGATTGGCGTGATCTGCCAAATGGTTCTGGC 147644 26 100.0 34 .......................... TTCTGGAATCAGCAAAAGCTTTCCACCTTCAGGC 147704 26 100.0 34 .......................... ACACTGTTCTGGATTTTCTTCACACTTAGAAGGC 147764 26 100.0 34 .......................... TCTCAGAGCTTCAAATATGCTATGCGTTGCTTGC 147824 26 100.0 34 .......................... TGATACGGATCAGCCCGACATTGATGATCAAGGC 147884 26 100.0 34 .......................... ACTTAAAGACTTTACCCGTTACCACAAGTGATGT 147944 26 100.0 22 .......................... AAGAAGAATGGGATGCGGCTGT Deletion [147992] 147992 26 100.0 34 .......................... TGAAAATAGCGATTGGCGTGATACGCCTGACGGT 148052 26 100.0 34 .......................... AAAGTATCGATCGCATTGCTAATTCAGAACGTGT 148112 26 92.3 34 .............A....T....... GCAACGAACAGTTAGAGAGCAAATGCTCACGGGC 148172 26 92.3 34 ..................T......G ATTGGAAATGGACAAGTTTCAAAAGTGGCGCGAT 148232 26 76.9 0 .................AT...TTTT | ========== ====== ====== ====== ========================== ================================== ================== 23 26 98.3 34 TTCCTATCGCATAGATAGCTTAGAAA # Left flank : TAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAACGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTATTTTTAAAGCATAATATCAAATTATTAAACTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATAGC # Right flank : TCGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCACCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAGAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCCGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTCATAAAGTCCTTTCATTTTGCCTATGGGAGAAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGCCCTACTGTACTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2145-8658 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPV01000003.1 Acinetobacter ursingii strain blaTEM-116 Acinetob.ursingii_TEM-116_contig_3_cov_135.50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2145 30 93.3 30 ............................AA AGGAATTACATTCGATCTGTTCTCAGTTTG 2205 30 96.7 30 .............................A GAAATGCAAGGAGGTTCGGCATGAGTAATT 2265 30 96.7 30 .............................C TAAGCCTTGTCGTTTAAGCTCCAGACCACG 2325 30 96.7 30 ............................C. ACGTATTGAAGCTGTTATCCGTGGTCTGGA 2385 30 93.3 30 ............................AA AAGAAAAAACCAATGTCGTTCCACTTGTAC 2445 30 96.7 30 .............................G GGCGCGATGGGAGCGATTTTGAGCGACTGT 2505 30 93.3 30 ............................CG ATGGTCATTAAAGTGTTACTCCAAAGGACA 2565 30 96.7 30 ............................A. TTCGCTCTGTTTGCTACAAGGCTTCGGAGT 2625 30 93.3 29 ............................AA AAAAATCAACTTGTCTTCGGCTTTCAAGA 2684 30 96.7 30 ............................A. TAAGATTAAGTTTGAGCTTTGCTTTTTTTC 2744 30 93.3 30 ............................AC AATCAGGACACATAACAGCAGATTCGGTTT 2804 30 96.7 30 ............................A. TAAGATTAAGTTTGAGCTTTGCTTTTTTTC 2864 30 96.7 30 ............................A. ACATTTTAAAAGCTATGGAAATGTCACACG 2924 30 96.7 30 .............................G AAACAACCTGTATTGGTGCGTACACGGCTT 2984 30 93.3 30 ............................AA CCAAATTAAAGCCCAATGATTGATAGAGAT 3044 30 93.3 30 ............................AC TATCTGCGGGAACAGGTTTAGCGGTCCAGT 3104 30 96.7 30 .............................G ATTGTGTCTGAGCTAAACGACCCATTTGAA 3164 30 96.7 30 ............................A. TACAAAAAAAGGCACTAGCTTCCTAGTGCC 3224 30 93.3 30 ............................AG ATACTTGATACAGAAATACGTGGCATGAAT 3284 30 96.7 30 .............................C AAATGCATTGTCTAGTGCTTCATCTGCACC 3344 30 93.3 30 ............................AC ACTAAGCGTTTTGTGCGATTACCTGTGCTG 3404 30 93.3 30 ............................AC AAAAAAAGGTCGTGATGCTATTGCCTCACA 3464 30 100.0 30 .............................. GATGATTAAATTCGATGTTGCTGCCGATCC 3524 30 96.7 30 .............................G ATAGAGAAAGTATGCAATTTCGCCTACGAT 3584 30 100.0 30 .............................. AGAGATTGCTTCTGTTAGTTTACTTGTAGT 3644 30 96.7 30 ............................A. CAGGGGTTTTTCGCCAGTCTTCTGGTGTTT 3704 30 93.3 30 ............................AG TCATTACCAAGTGCAGACCTTCACAAAAGT 3764 30 100.0 31 .............................. TTAATGACATAAACTATAGTTGTCTTTTAAT 3825 30 96.7 30 ............................A. TTAAGGCAATGCACTTACAAACATAAAGTT 3885 30 93.3 30 ............................AA ACTTTGAGTAAAATACTCATTAACTTGTTC 3945 30 93.3 30 ............................AC AAACTGGCTACAAGCAATTTTAACCCCTCT 4005 30 96.7 30 .............................A AAGCGACAACTGTAGAAGCTAGACCGAGTT 4065 30 96.7 30 .............................G TTAGTGTTGGCGCATCATTGCTATCTCTAG 4125 30 100.0 30 .............................. ATTTTTGAGTAATAAAAAATGTCACATTTT 4185 30 93.3 31 ............................GA TTACAGATAATACGATTATTAAAAGCCCAGT 4246 30 96.7 30 .............................G ACATTAAGCAAGGCTGTTCTAATGGTGCTG 4306 30 93.3 30 ............................GA GAAACATAATTGCGGTTGATCCAGAAAAGC 4366 30 96.7 30 .............................A ATAAGCCAATTGGTGGCTGATATGACTGAG 4426 30 93.3 30 ............................AA TATCAAGCATCAATACGGTAAATACATCAA 4486 30 96.7 30 ............................A. TAGTTGGATCAAGCGGAATTTCACAATACA 4546 30 100.0 30 .............................. CATTTCTTTTAATCGTGCCAAATGTTCATC 4606 30 100.0 30 .............................. TTTATATAAAAACAATTTTTCTGTTGAACA 4666 30 96.7 30 ............................A. ATTTTGTCATCACAAAGACGGCCATCTTTT 4726 30 96.7 30 ............................A. TAAGAAATGGCAATAATGATGCTGCACTGG 4786 30 100.0 30 .............................. ATGTTGAAGGCATTATCGCTGTTGATCAAA 4846 30 100.0 30 .............................. TAAATTTTAACACACATACAGAAGCGGTCA 4906 30 93.3 30 ............................AA TAAAGACAAGATCATCTACAGATGATTTAG 4966 30 100.0 30 .............................. TAAATACTTTGAAAACTGGTGCTTGGTAAT 5026 30 100.0 30 .............................. TAAATGATGTGTCGATCTATGCCTTACTAC 5086 30 93.3 30 ............................AA GAGATTTGCAACGTGAGGCAGGCAAATCAT 5146 30 100.0 30 .............................. CTGAAACTTCTATCCAAGAAATATTTGTAC 5206 30 96.7 30 .............................G CATTTTCAAAAGATGATTTGCTCAAAACTT 5266 30 93.3 30 ............................AG AACCATTTCCGTTGCCGGAACCATTACTTG 5326 30 96.7 30 ............................A. ATGCTTGGTATGTTCATGGAAGCATTTCCA 5386 30 93.3 31 ............................CG AACGACGCTTAATAGAGCGGGGCACACTACT 5447 30 100.0 30 .............................. TGATAACTAAGGGTTTTTCTTTGGAACTGG 5507 30 96.7 30 ............................G. ACAAGAGACTCGCAGCGTATTTTTTAAAAA 5567 30 93.3 30 ............................AA GAAGATGCAAAACGTCGTTTTATTCGCGAA 5627 30 93.3 30 .................T...........G TAGGAAGTTTGAAATGTGGTTCTGTGCCTA 5687 30 93.3 30 ............................AG AAGTTTTATGAGACTTGAGGCTAATACTTC 5747 30 93.3 30 ............................AA CCAACACTAGTATCGTCATAATCATGATTA 5807 30 93.3 30 ............................AG TGAAACCAGCCCACTACGCATTTCTTCACG 5867 30 96.7 30 ............................C. AATATTTTTTCTATAATTAAATTTTAAGTT 5927 30 93.3 30 ............................AG AATCGTCTAGCAATTGACAATCGGTTGGCG 5987 30 100.0 30 .............................. GCTTTTTACATATTTGTAAACTAGATTTCT 6047 30 93.3 30 ............................AA TTTGAAATAACTGTCGGGTCTATTTCTAGT 6107 30 96.7 30 .............................A AGAAAAACCCTTAGTTATCAAAAGCTTATA 6167 30 93.3 30 ............................AG TCTTCACGATCTATCCCGATCGGTTCAATT 6227 30 93.3 30 ............................AG AATCGCTTTTACCCACAGAACGCAGATTAT 6287 30 100.0 30 .............................. TTGTCACAGTCACATCAGTTGGATTTGAGA 6347 30 93.3 30 ............................AC ACTGTAAAAATCAAAGACAAACATAAACTA 6407 30 93.3 30 ............................GA TCAACTCAACAGAAACATTATCAGGATGCA 6467 30 93.3 32 ............................CA TGACCACAAATTCTTTTTACAACTTTTACTTT 6529 30 96.7 30 .............................A TCCATTAAAAATTAAGCCCCTTATAGGGGC 6589 30 93.3 30 ............................AA AAAGGAGATTGATAAATAGAACCTTCAATC 6649 30 93.3 30 ............................AA TGATATTGAAAAATGAATTTTAACTATTGT 6709 30 100.0 30 .............................. TGGCTTATCGCTGGTCATCAAGAATGATTT 6769 30 96.7 30 .............................G TAGTTGTTGTTGTTGTATTACCATTTGAAT 6829 30 100.0 30 .............................. TTCGCGGTTATTTTTTGCTATCGCAAAGTA 6889 30 96.7 30 ............................G. GTACCGATTTTTCGAGTCGGCGACATCGGC 6949 30 96.7 30 ............................A. GTTTGACTTGCTCATTCATTTTCTATCTCG 7009 30 96.7 30 ............................A. TCACAGTGCCCGTAGCGTCACCAGAAATTG 7069 30 93.3 30 ............................AG TCATAGAATGGCTTTGTTTTTAATCTATGG 7129 30 96.7 30 ............................A. TTTTAATAACAACAAGATTACTGTTTGGAC 7189 30 96.7 30 ............................A. CTGGAAACCGCCTAACGTGTCTTGGAGATC 7249 30 96.7 30 .............................G TTCCCAGACAGCTCAACCATGGGTGCTTTC 7309 30 96.7 30 .............................A ATTGTAGTGATTTTGAATTTTGTGATTAAT 7369 30 96.7 30 ............................A. AAATATCTATGGCTTCATAACCAATATCAT 7429 30 100.0 30 .............................. TTTAACTAAAAACTTAATCTCTTTCGTTTT 7489 30 93.3 30 ............................GA TCTTCTGATTACTTGACTTGTTGTTGTAAG 7549 30 100.0 30 .............................. TATCGATTTTGCTGCATCACTTAAATGTTG 7609 30 96.7 30 .............................A AATGAGTTAAAAAGATGGAAACAATCGGTA 7669 30 90.0 30 ..........A.................AG TGGCCTCATAAATGCTTGCGCCAGTAGCGT 7729 30 96.7 30 ..........A................... TATGCGGAACGATATGATCGACCACCGTAG 7789 30 90.0 30 ..........A.................AG TAATTAACGCTGGGCTAGATAATGTTTCAC 7849 30 90.0 30 ..........A.................AA TGGATCTAATTCAGCAAGCTCATCATTGTT 7909 30 90.0 30 ..........A.................AG ACGTAAAATATCGTCATGCAGTCGATTTCG 7969 30 93.3 30 ..........A.................A. TAAGAGCATCGTCGCATAAGTATGGCGTGC 8029 30 90.0 30 ..........A.................AG ATGAAGAAGCAGACAATCAACAAGGTATTT 8089 30 90.0 30 ..........A.................AA GTAAAGAAGTTGGAGAAAAATTGGTTGAAC 8149 30 90.0 30 ..........A.................AG TTCGCATAGTTGGAGGCTGTAAGGTTGGTG 8209 30 93.3 30 ..........A..................C AATTAACTCCATGACTGCATAGGCACCAAT 8269 30 93.3 30 ..........A..................C CAACAGACGCGGAATCAACGACAAGTTTAT 8329 30 93.3 30 ..........A..................G TTTTGCTCAAATTGTCGAACCATTGCACAC 8389 30 90.0 30 ..........A.................AC ACAGAATTATTTATACGAATATTGTTGGTT 8449 30 96.7 30 ..........A................... GCCTTGTCCACCTTTTGAATAAAGCAGATG 8509 30 90.0 30 ..........A.................AG ATAATAATATCCCTGAAGTTGAAGACTATA 8569 30 90.0 30 ..........A.................AG GCTCTTTTAAAACGGCTTCTACAATTGAAC 8629 30 90.0 0 ..........A.................AC | ========== ====== ====== ====== ============================== ================================ ================== 109 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TAGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGATGGAGACCTTTGAACCTTATATCAATATGAAAAGTCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCCACAGTACCTGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGGGATAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : CTACGATATTATGTAGCAACCGCACAAAGATATAATAATCAATTGCTTACATTTAGAAAAAGCCGAGATTAACTCGGCATTCTTGTTTGGAAATCAATGGCAAACTCTGATTCAGTGCGTGGTTCTGTATTGTAGAATTTAAAGCCTAAACACTTGACCTCTTTATAACCATGCGATTTGACTTCATTTAAGAACTCAACATAGTTTTTTGAATCATCTTGTTCTGCGTCAAAAACAATTTGGCTTTCATCGTCCAAACTTATCAATACTTCCTCTTTCCAAGCATCCTTTTCAAGTAAATGACCGCCTTTAGGCTCAATTAGGCATTGATAGTACATTTCGCCATTTTCAGCATCATTAATGATCAGCATATAGTCAGGGCTGAACCTTCGACCATCTTTAGGACTAAACAACCAATAGTCCAGTTCATTGCGTATCAAGTAAATTTCTGCACCCTTGTAGCGTGATTTAAGCTCTTCAATCTGAGTTGCAACAAACTT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15231-17841 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPV01000003.1 Acinetobacter ursingii strain blaTEM-116 Acinetob.ursingii_TEM-116_contig_3_cov_135.50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15231 28 100.0 32 ............................ ATACATGTGCTGTATTGTTAAATTGCTAAGAA 15291 28 100.0 32 ............................ ATAAGGATTTTTAAATGAATATTGAAGAATAT 15351 28 100.0 32 ............................ AATAACTTAAAGCATCTGGTAATTTCATTGAT 15411 28 100.0 32 ............................ TAATCTCTTGCTCAGTTATCATTCAACCTCCC 15471 28 100.0 32 ............................ TTATATTTTCTCTCGACAATAAAAGGAAATAA 15531 28 100.0 33 ............................ ATACCACTCAAAATCATATCCACCTTTTTCAAT 15592 28 100.0 32 ............................ AGATATTAATCACGAAAGGTCAGGGTTTAGAA 15652 28 100.0 32 ............................ TGTACCAGAACCGTCACCATTGCCATCCCCTG 15712 28 100.0 32 ............................ ACGTTAAGACAAATTCAGGAATTTGTAATCAA 15772 28 100.0 32 ............................ TTTTTCTGAGCAGTTCGTATGCTGCGATCAGG 15832 28 100.0 32 ............................ AAATTATTGCAAGGTCATAATGTTTTTGCAGA 15892 28 100.0 32 ............................ CAGTCTTGTTACCGCCATTAAGTTACACCGAA 15952 28 100.0 32 ............................ AGTGCATCTGCTCATACGTCAGTACAGTTCAA 16012 28 100.0 32 ............................ TAACGCCTATAATAATTATTGGTCACTGTTAG 16072 28 100.0 33 ............................ CAAAAATTTGAGGAGTAGCTACTCATGGCACGT 16133 28 100.0 32 ............................ GATAACCCAGTGTGGCACTGGTTAGCTATTGC 16193 28 100.0 32 ............................ TTACCGAGCAATTTAGCAACATTTGCAGCCGT 16253 28 100.0 32 ............................ ATATTGGTCATTAATACGATCGACAATTTCGT 16313 28 100.0 33 ............................ ATTTCACGGCAAATAGGGGCGTAGTTCTTCAAT 16374 28 100.0 32 ............................ AATAGAAGCTGGACAGGTGTTTAATGCTTGCA 16434 28 100.0 32 ............................ AAAAAGAGGCTAATTGTTAGCCTCTTCAGAAA 16494 28 100.0 32 ............................ ATTTAGCATCCCTAATGGCAGGGCAATATATT 16554 28 100.0 32 ............................ AATCGTCACGAAATAATACAATCTGATATTTT 16614 28 100.0 32 ............................ ACATCATCCAGTGTAGCCAGTTGTTTCTCGTA 16674 28 100.0 32 ............................ ATACTCAGGTGCTTGGCAGAAAAACGATGAAT 16734 28 100.0 32 ............................ ACTAATGCGACGAAATATAACGTTACGCCATA 16794 28 100.0 32 ............................ ATGCGCGACTACACCATTGCCGCGTTCTCTGT 16854 28 100.0 32 ............................ AGTCGAAAAAATCAGAAACTTTTTCAAAAAAA 16914 28 100.0 32 ............................ TAGACCCTAGCCCCTACGGGGGCTAACTTATT 16974 28 100.0 32 ............................ TTTTTATCAGCTTCAGAGATCACGTAGTAAGA 17034 28 100.0 32 ............................ AATAATTCGTGGTGTAACTCCTAGAGAGGCTT 17094 28 100.0 32 ............................ ATGAAAGTGGCATCTTTGTTGTGTACTAAGTA 17154 28 100.0 32 ............................ ACTTCTAAGTACAACTAAAACACCGTAATTAT 17214 28 100.0 32 ............................ TTTATTGTGCGTTTAGATGTGCTGTCATAGAC 17274 28 100.0 32 ............................ TAACACGATTCATTACATGGAGCGTAACCACA 17334 28 100.0 32 ............................ TTTCAAGCTTCGCTTATGGGCATTCCGAGTGA 17394 28 100.0 32 ............................ ATTCTCAACGTCCTCGGCGTATTCGTTTTCGT 17454 28 96.4 32 ..........G................. ATTTGGCAATGTTACAGATGAGTTCTGCAAAA 17514 28 96.4 32 ..........G................. AACATACCCAAAAAGTCTTTGATCTTATTGAT 17574 28 96.4 32 ..........G................. AGCAAGCAATAGTGAGCCAACCTTATCTGTTA 17634 28 96.4 32 ..........G................. TATCCCCAAACGAAAGCAAATTCATGCGTATG 17694 28 96.4 32 ..........G................. TTTAAGCTGCTGAATCGCCCACATCTTATTGC 17754 28 96.4 32 ..................T......... GATCCAGAAGGGGTACAACCGATTAAGCCTTT 17814 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.5 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : GGGCTATAATAATACCTTTATCTCTTAATCGGTTCAGCACTTTGATGAAGCTAGGTGAAATATCATTGCCTACAGATGAATCTATGCCTTTAATGTCCAAAACTTTCATCATTAAATCTTTGTAGTTCATTGGCTCTTTTGCTTCACGCAAGCAAGTTAAGACTAATGACTGTAGTTCACCTCTTCCAAAATAAGGGTTTCTTTGATTTGTACACTTAGATTTAACGCTTCTTAGATCAAATTCAGGTGAAAATAACTTAATAGTGTGATCTACATGCAGTAGCATTTCAGAGATACGTTGAATTTCTTTTTGATGTGCTTCAATTTGACCAAGCAATTCCGCACGTTTTTTAGTTAATCCTGATACGATATGTGATTCAGCCATAATCCCTTTCCTTATGTGTAAAGGAATTATTTTAAATGGCGAATCACTCTATTTATTGTGCTGTTGCTACATAATAGCGGAAAACTATAACCAAGTGGTATAGGGAGGAAATGAT # Right flank : ATGCAAACGATGTGTAAAAGTTTAAGCGGATTGATTCACGAGACTAGAGTATGGAATCTAGCCGATCATAAAAATGAGTTAAAAAGGAATGATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAAGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTCGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //