Array 1 744260-743560 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLP01000001.1 Micromonospora sagamiensis strain DSM 43912 JD81DRAFT_unitig_0_quiver.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 744259 28 100.0 33 ............................ AACCCGCATCTCGCCTGGAACCCGTGAGCGATA 744198 28 100.0 34 ............................ CTCGACTACCACTTGATGCTGTCCGACCCGACCC 744136 28 100.0 33 ............................ CGTCGTCGTGCTCGCGCAGACGGTTGAGGACTT 744075 28 100.0 33 ............................ GGAGAGCGTGACCGTGACCGACACCGTGATCGA 744014 28 100.0 33 ............................ CCAACTCTGGGTCACCTCGCCGGACAGGACGTT 743953 28 100.0 33 ............................ GGCGTACCTGGGTGGGACGTGGCGGGAGGTCTA 743892 28 100.0 33 ............................ CCCGACCGGCCTGTTCTTCCACCCGATCGCCGA 743831 28 100.0 33 ............................ GCCGCCGGCCACACCCACGGGCGGTGGGGCGGC 743770 28 100.0 33 ............................ CGCCCACGACCCGATCGGCGCGTGCGGGTGGTC 743709 28 100.0 33 ............................ CGCGAGGGCCCTATCCCCCTCGGCACGCTCGGC 743648 28 100.0 33 ............................ CTTGTTGATCACGTACAGGTCGAAACCCGTGAT 743587 28 92.9 0 ............T...........G... | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCATCAGTCCCCACCGCCCGAACCCGGTGAGTTCAGCCCGCGGAAGGATCCGTCTCGACGATTTCGGCAAACGCCTCGGATGCCTTCTTCCAGCCGTGGACCTGATGGGCCCCGGCTTGTTGACCTCGTCATCCACCATCCCCAGACGCCGCAGGTCCAAGATGGTCGCCACCCTCGGGAAGCGCCCGAGCCGGACGTACCGATGGGCTCGATCGACGCGCAGGGTCAGACTCAGGCCCCCGTTGCTGCCTCGCCTCGCCCCGAGCGGGTGCAGGCAGGCGAAAACCGCCGCAGCTACGACGACGACACCGCTGGCGAGCGCGCCCGGCCTATCAGCGGTACAAGAACCGGGAGACGTAGCGGCCCACCCTCAACTTGACAACTAACGTCGGGTGCGCTGTGTTCGACGTGAGCCCGTCACCTTGCCCCGGTGGAGCGTCATGCCAACCAAAGTGAAGAAAATTGGCCTAGTTGATCTTTAGCGCACCAGGTCAGGAAGC # Right flank : TTTGCGTCGTAGCGTCTTGCATCGTCTTGTCGCCTGTCCCCCACGTACGACCCGACCGAGTAGTGCCCTGCATCAACGGCTGATCGACGGCGAGACCGGGGCAGCTGACGGCGGGGTATCAGGACGCCGCGTCAGCAGTTCGGGGCGCGCCAGAACTGGCTGGACTTGTTGCCGACGTGGACGTGGTCGTCGTGGTCGGGGTAACCCGGCCCCAGGATCTCCTTGAAACCGCAGTACCGGGCCATCCGCCACATCTCGCAGAGACTTGGTCCGCTCGACGTGCCCAGGTCGGCGGCCTTGCCGTACGTGTGCAGGCTGCCGGACGCTCCGCCGACCTTGCTGTTGCAGGAGATGCTCCGGAATCCGGAGGAGATGACGATCGGCCGGTCGCCGAGCTTGTGCCGCAACGCCTCCAGTTGCCACATGACCCGCAACAGGTTCTCCCGCACGGTGGCGGCGTCGACCGCACCACCGGAAAAGCCGGCCTGGCCACAACCACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 760536-761356 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLP01000001.1 Micromonospora sagamiensis strain DSM 43912 JD81DRAFT_unitig_0_quiver.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 760536 28 100.0 33 ............................ CCTTGTGCACGGTGGTGACCTGGGCGGGACGGT 760597 28 100.0 33 ............................ GCGGTCGGACGCCGGCGGGCACCGGGATTCCTG 760658 28 100.0 33 ............................ CTCCGCGCCGTTGTCAGACAGGGAATCGAACGT 760719 28 100.0 33 ............................ GTGGTACGGGCCGATGCTCCAGGTCGCGGAGAC 760780 28 100.0 33 ............................ GCGGGAGTTGGAGTCGAATCCCCTGCTGGCCGC 760841 28 100.0 33 ............................ GCTGCGGGGCGGCATCCAGCGTGGCGAGTTCCC 760902 28 100.0 33 ............................ CGGGTCGTCATCGTGGTCGCACACCACCAGGGA 760963 28 100.0 33 ............................ GCGCCGCACCCTCCTGAGACTCGGCGAGAGCCT 761024 28 100.0 33 ............................ CCACCACCGTGGCCGGCTCGTCCCCGGCGCTGA 761085 28 96.4 33 ........T................... CCACCACCGTGGCCGGCTCGTCCCCGGCGCTGA 761146 28 96.4 33 ........T................... CCGAGACGCCGGAGCGCTTGCGGCAGAGGCCTC 761207 28 96.4 33 ...............T............ GCGGAACGGAAGTGGCAGGCGGAAGTAGCTCGC 761268 28 100.0 33 ............................ AATCCGACAGGAACCACGCCGAGTCCCGGCGCA 761329 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCCGGCTCTGGGACGCAGACGGGCCGGAACTCGTCGGCGGGCGCAACTACGGCAGCGAGCTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCCGAGGGGCTTCGAGGGCATCTGACGCAGTGGCTGTTGGAGATTTCCGCAGGGGTCTACGTGGGACACGTCAACAGCCGGATCCGGCAGCGGCTCTGGGGCAAGGTGATCGAGATGGCCGGGCCCGGTCGGGCCCTGCTCGTCTACCAGGCCCCCGGCGAGCAGCGGCTTTCCTTCAGCGTGCACGACCACCACTGGAAGCCGGTGGACCTCGACGGTGTCACGCTGATCCGCCGCCCCACCGAACGGAAGACGTTCAACCCAGCCCTGCCGAGAGGCTGGAGCAAGGCGTCGAAACGCCGCCGGTTCGGCCGGAGGTCACCGGACTCTGGCGTACCAGCGGCTCCGAATCAAAGTGAACAAAAAACCGAGAGTTGATCTTCGGAGCCGCAGGTCAGGAAGC # Right flank : CCGTGGGGCCGTTCGTAGTTCCGGACCAAGAGCAACTCCGGTTGGCCCTGCCTGGATGACGTCAACGAGGTCGCCGAGCGGCACGGGGACACCTGGCAGCTGATGGTTGGCGGGTACTGGCTGCGCATCGGCCTGGATGCCGGGAACCATAGCTGGGACGAGATGTTAGCCGCCGTGGGACCGGTCACCAGCAGCACCGTCCAGCGAACCGCTCTGGTCGCGACGGTGGAACACGTGACGGTAGAGCAGCCGTTCCTCTCCAGAGCCCTCGCTGCCTCGAACCCGCCGGCCGCCGGCCCGATCCTGGAACTGCTCCCGCCCGGCGGCGGTCCGCTGCTGCGTACCGGCGAGCAGCGGACCCCGCTGGCCACCGTCCATCCGGACGGGCGGGTGGAGTTGCGCGGGCGACGGGGTGGCCCGTGTACGTGCTGGACGAGGGGAGCCAGTGCAACGACGAAGCCTGCCCCTGAGAAGAAATCGAAGGCGGGACGATCTGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 4628828-4630561 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLP01000001.1 Micromonospora sagamiensis strain DSM 43912 JD81DRAFT_unitig_0_quiver.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4628828 28 100.0 33 ............................ TTGTCACGTCGTGTTTTTGGGACAAGGAAAGGC 4628889 28 100.0 33 ............................ CACGCCCGCCGCACTGGACTTCCGTTCCGGGCT 4628950 28 100.0 33 ............................ CGACGTACACGCCGGCCATGCTCCGTTCGACGT 4629011 28 100.0 33 ............................ CGGTCGGTGCCCCTGGCCCCGGTCCCACGTAAG 4629072 28 100.0 33 ............................ TCCCTCGCCCAGCATCAGGTGACCCAGACCCAC 4629133 28 100.0 33 ............................ CTCGCGGCACTTCTCCCGCACCGCAGGCCAGCC 4629194 28 100.0 33 ............................ CTACCAGCGCGGGACGGCGTGGATCGTGAGCAG 4629255 28 100.0 33 ............................ CGGGTCGTCGGTGTCCACCTCCACCGGGCCGTC 4629316 28 100.0 33 ............................ GTTGCTCCGGGCGGCGTCCGACTTGACCACAAT 4629377 28 100.0 33 ............................ GTCCGCCGGGCTGACCCGGCAGACCCTCAACGA 4629438 28 100.0 33 ............................ CGAGCGACGACGACGTAGGGGAGATCAAGAGAT 4629499 28 100.0 33 ............................ TCCATGACGGCGCGTGTCGAGTTCGACAACATT 4629560 28 100.0 33 ............................ GAACTCCGCGCCAAGGCGGCCCGCGTCGCTGCC 4629621 28 100.0 33 ............................ GATCAGGTACGAGGAAGAGGTGAAGGACGGGCC 4629682 28 100.0 33 ............................ CTGCAACGGGCCCTGGACGCGATCAACGCTCGC 4629743 28 100.0 33 ............................ GGGCACCGCCGCGGCGATCGAGGAGTACGGCTA 4629804 28 100.0 33 ............................ CCCGGAATTCATCGCCGGGGACTTCGTCGTGGC 4629865 28 100.0 33 ............................ CGTGTCGCGTCGTGCCTCGCTTGCCGCTCCGGC 4629926 28 100.0 33 ............................ CGACCATTGCCGTTGCGATGAAGGAGTACGCGG 4629987 28 100.0 33 ............................ GTAGCGCATCGGCAGACCGGTCACCCCGGCGAC 4630048 28 100.0 32 ............................ AGCAGCACGACCAGAGGAGTACGGCATGAAGT 4630108 28 100.0 33 ............................ CTGGCGACGCTGGCGGACCTCGCCGCTCACCTC 4630169 28 100.0 33 ............................ ACCTCACCGATGCAGGCATTCAGCTAGTGGTGG 4630230 28 100.0 33 ............................ CCGGCGGCACATCCAGGCACGGCTGAGCCAGTT 4630291 28 100.0 33 ............................ CCCGGCGACCGCCGTCCCGCACGCGCAGACCGC 4630352 28 96.4 33 .....................A...... GGCCAAGATCACCCGCGAAACGTGGGACCAGGG 4630413 28 96.4 34 .......................A.... CCGGCCACGAGGACTTCATGCTGTCGTTCGCCTG 4630475 26 85.7 33 ............--........C....T CGCCGGCCCGGTTGCTCTGGCCTACCGCAGGGT 4630534 28 89.3 0 .....T..T...............T... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 98.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGAGGCACTCCGCTGCTGACGAGAGGACCTCCGCCACGAGCAACTTAGGACCCTAAGTCACCAGAGTCAACACAGGGTTCACACCGTGTCGCGCTTGGTGAGAGTCTGGACAGGCTGACGAGAGGTGGTCCACATGCCCCGCAAGCCTGTGTACGAGCAGGTCTTCGACGACATCACCGCGTCGATCCGCAGCGGCACGCTCAAGCCCGGCGACAAGTTGCCGACCATCGCCGAACTCGCCCGGCAGTACAGTTCCTCCGACAACCCGATCAAGCGGGCTCTCTGGATCCTCGACGAGCGCGGCTGGATCGAGGTGCACCAGGGCAAGGGCTCATTTGTCGCAGCCGAGCCGCCCGCCTAGAGCAGGCTTGATCCTTGACGACGCACGACCGATAGTTCTAGAGAAGCCGAACCACCATCCACCACTCCAGGAATCGATCTTGAGAGCCAAAGTGAATGAAAACGCAGTAGTTGATCTCTAGAAACGCAGGTCAAGAAGT # Right flank : CGGGATGGCCTGCTGCGCGAGCAGCTTGAGGACGCGTCGCCGGACAGGTGTAGACCGATGCCCTGACGTTGAAGACCGCGCCGCCTCTCGGCGCCGCGACCGATGTCGACGATGCCCGCCGGGCCGGAGTCCTGACCCGCGCCGCAGCTGGTGACCTCGCCCTCGGCCACGCTGCCACGCCACCCTCGCCCACCAGGTACAACCTGATAAATGTCGATCTCAAGACCGTCGATGCCGCAAAATGACCCTGCACCTGGCGGTCTCTGAGGCACCCGGCCTCAGGTCGTCGGGGGTTCGGGGAGGACAACATGCGGTTTGGCAGGCGACTGGTGGTTTCGGTCGCGATGGTTCTCGGTTTTCTGGTCCTGTCTGGGCAGCCGGCCCAGGCCGCCTACTACAACACGTACAGCGACATTGCCAGCACACCCGACACAGGATGCTGCACCGGGGTGCAGGGCTTCGCCGCCGGAGCCACCTACCTCTACTCGATCAAGACGCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //