Array 1 2728154-2729502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050333.1 Pseudomonas aeruginosa strain DVT412 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2728154 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 2728214 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 2728274 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 2728334 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 2728394 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 2728454 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 2728514 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 2728574 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 2728634 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 2728694 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 2728754 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 2728814 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 2728874 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 2728934 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 2728994 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 2729054 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 2729114 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 2729174 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 2729234 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 2729294 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 2729354 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 2729414 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 2729475 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2739366-2738377 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050333.1 Pseudomonas aeruginosa strain DVT412 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2739365 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 2739305 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 2739245 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 2739185 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 2739125 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 2739065 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 2739005 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 2738945 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 2738885 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 2738825 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 2738765 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 2738705 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 2738644 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 2738584 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 2738524 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2738464 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2738404 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //