Array 1 1826343-1826176 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP043919.1 Staphylococcus aureus strain GHA5 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                         	Insertion/Deletion
==========	======	======	======	=============================	========================================	==================
   1826342	    29	 100.0	    40	.............................	TTATGCATTAGTAGCNAANCNNNNTAANNNNTTNNTNNNN	
   1826273	    29	 100.0	    40	.............................	NNNTGCNTNNGNAGCGAAGCTAACTAATGCGTTCCTTTAT	
   1826204	    29	 100.0	     0	.............................	|                                       	
==========	======	======	======	=============================	========================================	==================
         3	    29	 100.0	    40	TTTCTGCGAATTTTATGAGCTAGAAAGGC	                                        	       

# Left flank :   CGATAATTGTTATTGCGTTAGGTACAACGTCATCTTCTTTGAACAAACGAGGTGCATTTTGAATAACTACTTGGATACCTACAAACATAATGACAAATGACACCAATAATGAAGAAATATTTTCAGACTTCAAATGGCCATAAGGATGATTTCGATCGGCAGGTTTAATTGAAATTTTCAATCCAATAATAACAGCTAAAGAAACGATAATATCTGTCATATTGTTTAATGCGTCGGCTCTTACAGCTGCAGAGTTAAAGACAAAACCCGTGACATACTTAACAATAGATAAGATTATATATACAATTAAACTCAAATAAGCACCGCGTTGCGCCAATTTAAGATTTTCATTATGAGACATGCGTTGAACCACCTTGAATTAGTATAGTAACAATATTATGAATGATTTATTTTAATTTTACAACGTTTTTAATTTTTATAAATTTTTATAAAATTAAACTAATTTATTCATTCGCAACCCCTAAAAATAATTTTTAGCC
# Right flank :  GCCCAACTCTCCCTGTTTGTGAACTTTCGGCTCGAAAGTTTCTATGTTAGAACCCTATGCATGAGTTGCGAAGCTATCTAATGTCGTGACCTAATTATATAGAAGAAAAAGTGCATCAGTGACAAATTAAATGAGATTTCTACTCTACCAAACTCTCTTCGAAAGACAATTTTCTCCTCTATTTATTAGCAAAATATTGCATTTCTCCATATAGTACTTCCTTACTTAAAATACGCTGAATGTTCTGAATTAAACGCTTTTTTACATAGTTAACACTAGNTAATCTATTAGTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATGAAAAATAAATATATCTCGAAGTTGCTAGATGGGGCAGCAANAATTACGNNNNNNNNNNNNNNNNNNNNTGGGGAAGCAAAAGCGAGTGAAAACACGCAACAAACT

# Questionable array : NO	 Score: 2.67
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TTTCTGCGAATTTTATGAGCTAGAAAGGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.07%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,-0.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.27   Confidence: MEDIUM] 

# Array family : NA
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