Array 1 12583-13105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALEF010000522.1 Dietzia sp. B44 NODE_721_length_16062_cov_137.116608, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 12583 29 96.6 32 ............................T CATGGCGCCGTCCCCGATCGCGAACGCGGCCA 12644 29 96.6 32 ............................A GCCTGCAACGACCCGGCCGCGAAGCTGGCCCA 12705 29 79.3 34 .......................NNNNNN NNNNGGCCAACCGCTGCCGAAGTGCTGCCCCGAT 12768 29 100.0 32 ............................. TTCGCCGGGATGCAGGTGTTCAACACGACGCT 12829 29 100.0 32 ............................. GTGACGCTCGCGACCCAGCACACCGGTCATTA 12890 29 100.0 32 ............................. GAGCCCCAGCGCCAACCGGGCTGGCTTCCCTC 12951 29 79.3 36 .......................NNNNNN NNNNTCCGCGGCGAGGACATCGACCGCGACCGACAA 13016 29 96.6 32 ............................A TCGCACGCCGTAGGGTGCCGCGCCACCTACGT 13077 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 94.3 33 GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : GTTGCTACCGGAAACGGAAGATGAGGGTGAGGACGGGCTCGCGACGGTGATTGAACTCTGGGATGAGCAACTCGGGCGGGTGTCTGGCGGTACGAACTACAGCGAGGACGTGCCATGGTGACGATTGTCCTCACAGCTTGCCCAGCCGGGCTACGGGGTCACTTGACTCGATGGTTGATCGAAGTGAGTCCAGGAGTGTTCGTGGGCAGAGTCAATGCGAGGCTGCGTGATGAGCTCTGGAAGCTCATCCTTGAACTCGTGAAAGACGGGCGAGCGATCATGACTTACTCGACAAGGGAAACAGAGCAAGGGTTCGACTTTCGTGTCCATCGGCACGACTGGTCGGTAGAGGATTTCGAGGGGCTACGTGTGATGCGTAGAACCACCTCTAGTAAGCGCACCACCGGAATGCGTAGAGGTTGGTCTGCTGCGTCGCATCTGCGCCGGAGAAAGTAAACTAGAACTCCGAGTACTGCTCCATTTTCCGCTGGTCAGCCAGT # Right flank : GCAGGTCACGGACCGCGTCACGATCGCCTCGCAGTCGTCCCCGCGCAGGCGGGGCTGNNNNNNNNNNGCATCCTCGTGTCCGAGGGGCTGACGCAGTCGTCTCCGCGCAGGCGGGGCTGTTCCCCATCCGCTTTGGAGACGGACGCTCTCCCAGTTGTCGTCCCCGCGCAGGCGGGGCTGTTCCGCCCATCAAGTCCTGCGTGCGACTACCCGCAAAGTCGTCCCCGCGCAGGCGGGGCTGTTCCGGTCTTGACGCGGTCGACCGAGTTCTGGATCGTGTCGTCCCCGCGCAGGCGGGGCTNNNNNNNNNNTGCGGGCGGTAAACACCGAGCCAGTTGGGAGGGAACAGCCCCGCCTGCGCGGGGACGACGGCACTACGCAACGACAGGTGGACCCGCACCCGGGAACAGCCCCGCCTGCGCGGGGACGACGACCCCCCACTACTCAGTAAGGTCCCCCCGTCGGGAACAGCCCCGCCTGCGCGGGNNNNNNNNNNGACG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : GTCGTCCCCGCGCAGGCGGGGCTNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13200-13350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALEF010000522.1 Dietzia sp. B44 NODE_721_length_16062_cov_137.116608, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13200 29 93.1 32 ......T.....................C CATCCGCTTTGGAGACGGACGCTCTCCCAGTT 13261 29 100.0 32 ............................. CCCATCAAGTCCTGCGTGCGACTACCCGCAAA 13322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : GCCCAGTCGTCCCCGCGCAGGCGGGGCTNNNNNNNNNNGGCCAACCGCTGCCGAAGTGCTGCCCCGATGTCGTCCCCGCGCAGGCGGGGCTGTTCCGTTCGCCGGGATGCAGGTGTTCAACACGACGCTGTCGTCCCCGCGCAGGCGGGGCTGTTCCGGTGACGCTCGCGACCCAGCACACCGGTCATTAGTCGTCCCCGCGCAGGCGGGGCTGTTCCGGAGCCCCAGCGCCAACCGGGCTGGCTTCCCTCGTCGTCCCCGCGCAGGCGGGGCTNNNNNNNNNNTCCGCGGCGAGGACATCGACCGCGACCGACAAGTCGTCCCCGCGCAGGCGGGGCTGTTCCATCGCACGCCGTAGGGTGCCGCGCCACCTACGTGTCGTCCCCGCGCAGGCGGGGCTGTTCCGCAGGTCACGGACCGCGTCACGATCGCCTCGCAGTCGTCCCCGCGCAGGCGGGGCTGNNNNNNNNNNGCATCCTCGTGTCCGAGGGGCTGACGCA # Right flank : GGTCTTGACGCGGTCGACCGAGTTCTGGATCGTGTCGTCCCCGCGCAGGCGGGGCTNNNNNNNNNNTGCGGGCGGTAAACACCGAGCCAGTTGGGAGGGAACAGCCCCGCCTGCGCGGGGACGACGGCACTACGCAACGACAGGTGGACCCGCACCCGGGAACAGCCCCGCCTGCGCGGGGACGACGACCCCCCACTACTCAGTAAGGTCCCCCCGTCGGGAACAGCCCCGCCTGCGCGGGNNNNNNNNNNGACGTGCAAGACGCGCACCCCGACACGGTGAGGAACAGCCCCGCCTGCGCGGGGACGACGTCGAACCGGGTCCGAAGATCACGCACCTCGGCGGAACAGCCCCGCCTGCGCGGGGACGACGTCGGGCTGGCGGAGAATCATGGCGAGACGTTCGGAACAGCCCCGCCTGCGCGGGGACGACATGACGGTTCAGGTGACGACCCCGGAGAAGGACGGAACAGCCCCGCCTGCGCGGGGACGACGCGAACT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 14646-13446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALEF010000522.1 Dietzia sp. B44 NODE_721_length_16062_cov_137.116608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 14645 29 100.0 32 ............................. ATGCAGGACTGTCAGTAGCCCGAAGCCGTCAG 14584 29 100.0 32 ............................. GAGTACGGGCCGAAAACGGGGATGCTATGGGG 14523 29 100.0 32 ............................. GACATGGTCGAGTTGGATGGCCTTGGGACGGG 14462 29 100.0 35 ............................. ACGTCCGGTGCCGCCCCGACCCATACCCANNNNNN 14398 29 82.8 32 NNNN........................G ATGACGGCGAGCGCGAACCCGCACTGAATCCA 14337 29 100.0 32 ............................. AACCACGGGTACGTGAGGTACTCGCTCTCGAA 14276 29 96.6 35 ............................A CGTGGCGGATAGCTAACAGGTGCTTCGACGNNNNN 14212 29 79.3 33 NNNNN.......................G TCAGTTAGGTGCTTGATGATCCGGTCTGCTNNN 14150 29 75.9 33 NNNNNNN...................... GGGTCGCTCGTGTCGGGCGGCATCGAATACAGG 14088 29 100.0 32 ............................. GCGTCCATACTCCGCTGCTGTAGTCATGCCAA 14027 29 96.6 32 ............................G GTCAAGGCCGATGCTCGCCGTGAGGGCCTGGC 13966 29 100.0 34 ............................. GGGGATGTCATGTTCGCGCCCGAGGACAGTNNNN 13903 29 75.9 32 NNNNNN......................G GCCGACAACATCAACGCTCGCGGCAAGTTCGC 13842 29 96.6 32 ............................G TCCTTCTCCGGGGTCGTCACCTGAACCGTCAT 13781 29 96.6 32 ............................G AACGTCTCGCCATGATTCTCCGCCAGCCCGAC 13720 29 96.6 32 ............................G CCGAGGTGCGTGATCTTCGGACCCGGTTCGAC 13659 29 96.6 34 ............................T CACCGTGTCGGGGTGCGCGTCTTGCACGTCNNNN 13596 29 79.3 32 NNNNNN....................... GACGGGGGGACCTTACTGAGTAGTGGGGGGTC 13535 29 100.0 32 ............................. GGGTGCGGGTCCACCTGTCGTTGCGTAGTGCC 13474 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 20 29 93.6 33 GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Left flank : GAACGTCGAGCGGGGATAGCCCGCCTCTACGTCTGTCACGATGTTGACCAGGTACGGCACCCCGCTCGCGAACGCGCGGTCCAGGGCCGGGCCGATCTGCGCGGGATCGGTGACCATCTCACCGGCCCCACCGAGCGCCCTGACCACCTCGTCGTACCGGGTGCGCGGGGCGAGGTCGGCGATCACGTCGTAGCCGTACAGCATCTGCATCGGCCCCTTCTCCAGCCCCCACGCCCCGTTGTTCCCCATCACCATCACCACGGGCAGGTCGTGCCGCACGAGGGTGTCCACGTCGATCAGCGAGAACCCGGCCGCGCCGTCGCCGAGCAGCAGCACCACCTGGCTCGACGGCCGGGCGATCCTCGCGGCGATCNNNNNNNNNNCCGCGCAGGCGGGGCTGTTCCGGTCACTATCGCGGAGCAGTCGGGTATCACGNNNNNNNNNNCCCGCGCAGGCGGGGCTGTTCCCATGATGTCGGCCATCGACTTGGAGGCCCTGGT # Right flank : TCCCAACTGGCTCGGTGTTTACCGCCCGCANNNNNNNNNNAGCCCCGCCTGCGCGGGGACGACACGATCCAGAACTCGGTCGACCGCGTCAAGACCGGAACAGCCCCGCCTGCGCGGGGACGACTTTGCGGGTAGTCGCACGCAGGACTTGATGGGCGGAACAGCCCCGCCTGCGCGGGGACGACAACTGGGAGAGCGTCCGTCTCCAAAGCGGATGGGGAACAGCCCCGCCTGCGCGGAGACGACTGCGTCAGCCCCTCGGACACGAGGATGCNNNNNNNNNNCAGCCCCGCCTGCGCGGGGACGACTGCGAGGCGATCGTGACGCGGTCCGTGACCTGCGGAACAGCCCCGCCTGCGCGGGGACGACACGTAGGTGGCGCGGCACCCTACGGCGTGCGATGGAACAGCCCCGCCTGCGCGGGGACGACTTGTCGGTCGCGGTCGATGTCCTCGCCGCGGANNNNNNNNNNAGCCCCGCCTGCGCGGGGACGACGAGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 15970-15698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALEF010000522.1 Dietzia sp. B44 NODE_721_length_16062_cov_137.116608, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15969 29 96.6 31 ............................C GCCAGCAGGCGGTAATGGCAGGTGCTAGGAC 15909 29 93.1 32 ..T.........................C GTCGACTTCTCGCCCGTCTCCGGGTCCTCGTA 15848 29 100.0 32 ............................. AGCTCGTCGGCGACGCGAGAATCCCCGTCGGG 15787 29 100.0 32 ............................. GCACCCGGTCGACCTCGACCGTCCCGTCCTCC 15726 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTCGTCCCCGCGCAGGCGGGGCTGTTCCT # Left flank : TCCCCGCGCAGGCGGGGCTGTTCCCGACCCGCGCGTGCCAGTGCACCGTCTGCCNNNNNNNNNNCCCGCGCAGGCGGGGCTGTTCCCGCCCACTGGAGCGCGCACTTGACCGGGATGA # Right flank : GCTGAAGCAGTACGGACTCCCGGCGACTATNNNNNNNNNNCCCGCGCAGGCGGGGCTGTTCCGCAGTTCTGCCTTTGAGGTGGGGCACAAAACACGTCGTCCCCGCGCAGGCGGGGTTGTTCCGGCGGTCCGCGGCGGAGTCGGTCATGCCGTTGCGTCGTCCCTGCGCAGGCGGGCCTGTTCCGCAGTGCCTACGACTCGACGGTCTGACCCGTGGGCCGTCCCCGCGCAAGTGAGGCTGGTCCGGTGGGGCTTAAGGCTCTGGGGGCCGCTTCGGAGTCGCCCCTGCGCAGGACGGGCTTCCTACGCCACTTGCAATGTCATCCGTGCGGAAACGAAATCGGTTTTGGACTTCTCGGGCTGAATTGTTGTCTGATCTCCCCGCTAGAGTACTAGGAAATCGTCCCCGCGAAAGCGGGGCTGTTCCTCGTGACGTCGGAGGATCGAGTCTTCCCACCGGGTCTTCCCCGCGAAAGCGGGGTTCCGGCAAATTGCAAGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //