Array 1 18285-16863 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POPB01000311.1 Streptococcus suis strain 614 SS_0614_Contig311, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     18284	    32	 100.0	    34	................................	AATCCAGAATCGTTGTGCAAATCAACGCACGGCA  	
     18218	    32	 100.0	    33	................................	ATAATATCTGAGGCATTCATCCCTGTACTCTCT   	
     18153	    32	 100.0	    35	................................	TTGGATTGTCATTGATACAACAACTAAACGTATAA 	
     18086	    32	 100.0	    34	................................	CTCGATGCTAGTAGTACCGCTGACCGAAGTCACA  	
     18020	    32	 100.0	    33	................................	TTTAAATAACCGCACTGCCGTACTCCTTTTGTG   	
     17955	    32	 100.0	    35	................................	CAGTATAGAAAGGCTTAAACGCTATGAACGTGAAA 	
     17888	    32	 100.0	    35	................................	AAAATTACGGCTACACAGGCGGTTATGAAGCTGTA 	
     17821	    32	 100.0	    36	................................	AACAAAATGAGCAGGTACAAGGCTTTTGACACTGTT	
     17753	    32	 100.0	    34	................................	TCAGCGAACTCAATCGCTCCACGCTCGAGCATAC  	
     17687	    32	 100.0	    34	................................	TTTAACGTAGTGAAATACATCTTGCGCTTCCAAC  	
     17621	    32	 100.0	    35	................................	TTTTAGATTTCCTGTCGACGACTGTTGTGACCACG 	
     17554	    32	 100.0	    35	................................	CTTTCTTTATTTGCGGTTTTTCCTCTTGCTTTACC 	
     17487	    32	 100.0	    33	................................	GAGGCGAAGAACTTGTTGCACCGCTAGAATTTG   	
     17422	    32	 100.0	    33	................................	CCAGAGGGCTTGTTGGCAGAGATTACACAACAA   	
     17357	    32	 100.0	    35	................................	TCAGTTCGGAACGGTTTGGACGGTGTTATTTTCGC 	
     17290	    32	 100.0	    33	................................	TTATCTTGATACTAATAGAAATAACAAGATTTT   	
     17225	    32	 100.0	    33	................................	TATCGGTATTGACTTACAAAACGTTGTTGAATA   	
     17160	    32	 100.0	    35	................................	AGATAGACACTTGAGGTCTTCAAGGTCAACTGCGG 	
     17093	    32	 100.0	    33	................................	TGATATTTTGATTGTTGATAACTTGAAACTCAT   	
     17028	    32	 100.0	    35	................................	ACCGTATGTGATTTCACCAGTCTCGGATTCTGTAA 	
     16961	    32	 100.0	    34	................................	AAGATTGTGGATGCTCCGCAGTATTTCTGGAAAA  	
     16895	    32	  90.6	     0	.......................AG......C	|                                   	T [16866]
==========	======	======	======	================================	====================================	==================
        22	    32	  99.6	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGTTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGTTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGAGTGGAAACTATTGGACGAGATACTAGTTATGATCCAGATCAGGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATAAAATGCGAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGGTATTTTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT
# Right flank :  AGCAATTGGATTGTTTTTGCAATCATTTAAGATTCTATTTTCAATGAGAGCATCCAATTTTCCTCCAAGATTTCTAATTCCCTCTTGTCCATTCAAAGTTTTCCATGATATACTATATGTAATCGTTTTATTTCAAAGGAGACAAAGATGACAAACCTTAAAGAGCAGGTTGGGATTAAGGCGGCTGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAGGAGGGCCTACAAATCACAGGCGTAACGACCTCTCATGCCACGGCTGAGCATGCTGCGTCCCTTGGGATTCCCCTAAAAAACATCGACGAGGTCGATCACGTGGACTTGACGGTGGACGGAGCTGATGAGGTGGACGGAGCCTTCAATGGTATCAAGGGAGGCGGTGCCGCACTGCTTATGGAGAAGGTGGTCGCGGTCAACAGCAAAGACTGCATCTGGATCGT

# Questionable array : NO	 Score: 9.24
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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