Array 1 237207-239064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBU01000001.1 Salmonella enterica strain BCW_2534 NODE_1_length_466133_cov_2.65874, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237207 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 237268 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 237329 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 237390 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 237451 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 237512 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 237573 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 237634 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 237695 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 237756 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 237817 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 237878 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 237939 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 238000 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 238061 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 238122 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 238183 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 238244 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 238305 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 238366 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 238427 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 238488 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 238549 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 238610 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 238671 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 238732 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 238793 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 238854 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 238915 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 238976 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 239037 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255746-257485 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBU01000001.1 Salmonella enterica strain BCW_2534 NODE_1_length_466133_cov_2.65874, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 255746 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 255807 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 255868 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 255929 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 255990 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 256051 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 256112 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 256173 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 256234 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 256295 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 256356 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 256417 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 256478 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 256539 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 256600 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 256661 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 256722 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 256783 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 256845 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 256907 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 256968 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 257029 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 257090 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 257151 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 257212 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 257273 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 257334 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 257395 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 257456 29 100.0 0 ............................. | A [257483] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //