Array 1 979690-980694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051349.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain CVM 30176 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979690 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 979751 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 979812 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 979873 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 979934 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 979995 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 980056 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 980117 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 980179 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 980240 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 980301 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 980362 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 980423 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 980484 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 980545 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 980606 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 980667 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997259-998691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051349.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain CVM 30176 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 997259 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 997320 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 997381 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 997442 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 997503 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 997564 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 997625 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 997686 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 997747 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 997808 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 997869 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 997930 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 997991 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 998052 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 998113 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 998174 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 998235 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 998296 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 998357 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 998418 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 998479 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 998540 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 998601 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 998662 29 100.0 0 ............................. | A [998689] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //