Array 1 69158-68542 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNQ01000002.1 Streptococcus mitis strain BCA16 D8856_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================== ================== 69157 25 96.0 49 ........T................ TGTTTTTAATGTTATTCAGTTGATTTTTCAAACTTGGATCAAATGGTTA 69083 25 100.0 46 ......................... TCATTAGACTGGATATCTTCATTTTGATCGTTTATTTTATTCGTTA 69012 25 100.0 54 ......................... GCTGCAGATGCACCTGCTGAACCTGACGCAACTTTACGTGGTTTAGCTTCGTTA 68933 25 96.0 54 ..T...................... TAGCCTCAGCGCTCTACGCTATTTGCGGAACTTTTTGGCGTTTCGAAAATGTTC 68854 25 100.0 46 ......................... CTGAGTCTTTTTCACCAGTTTCTGGCAATTGAGGTTTGTAAGGTTA 68783 25 100.0 48 ......................... TTATTCATACACCAATAACAGTTCTCTTGGTAGTGGATGTGTTGGTTA 68710 25 100.0 45 ......................... GAGTCCAGTAATTAATATTAAATTTCTGGGTTTGAGCTTGAGTTC 68640 25 96.0 49 ....................T.... AGTTTGCGTCCTACAGAGCATTGATTAACTGCATTCTCGATTTCTGTTC 68566 25 80.0 0 .......T.............GCGG | ========== ====== ====== ====== ========================= ====================================================== ================== 9 25 96.4 49 TACCTTACCTATAAGGAATTGAGAC # Left flank : TTCTGATAAACTGAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATTTTTGCTTCCAGAGCTATGCCCGCAGGAGCAGGCGATTGAAATCTACGAATTGCTGCAAACTTCTCTCTATATCGAGAAGCATATCAATCTCCTAGATAGCCAAATCAGTGAACTGCATGATATCAGCCAGACGGAAGCAAGCAATAAATTAAATGACAGAGTATTAGTACTAACCGTTTTAAGTATTGCATTAGCAATTATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTGCAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTCATCTATTTCAAAAAGCGAAAATAAATGCACATCACCTTGATATGTGATGTTCATCGCAAGCGCGTGGCTAAAGTTTGCAATCTTGAAAAAAGGCCTGCTTTTTGATAAAATCAATATAGAAACAGCGATATTACTGTTGTTA # Right flank : TTTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATATCTGCTGGGAAGCCTGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAACTCTCTTAGTAGGAGAGTTTTTTCCATGTTTCAACCACAGATAGTATAGAGCTTAAGTTAGATGGCTGATCAGTTTTTTGTTACTTCCTGATAGTGTTGCGAATATTTATTGGCCTATTGTATTAAATTAAAAACATTATTTTCTATTTCGAATTTTCAAACATTAAATTTTCTGACAATTTATTGAAAAATTAAGGAAAGGATGTTATAATGGAACGTAAAATAAATTCAGGCTTCCTGAACCAATAGGAGTAAATAATGAAAAAACTAGGTGTTGTCCTTTTATCTTCTGCTTTGCTATTGACAGCATGTGCGGTTCGTTTTGAAAAATCAACCGAGACAAGTGATTCCTCTAAGGTGACAGCATTATCAGATGATAAACAAAAATTACTT # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 71835-70840 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNQ01000002.1 Streptococcus mitis strain BCA16 D8856_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 71834 29 100.0 49 ............................. TTATTTCATCATGAAATTCGATACAATTCGGATTGATAGTGCTTAGAAT 71756 29 100.0 44 ............................. ATATTGCAAGCTGCACACTTTTTAGTTACGAAAAGTACTGGCAT 71683 29 100.0 43 ............................. ATAACGATAGGGTCATCAAATTTGCAATCCATGAATATATATA 71611 29 100.0 47 ............................. GCGTTGAATGCTGCTGCAAAGGCTTGTGCATTCTTGTTACGTTGAGT 71535 29 89.7 45 A..C...........A............. TTGCCACTTTGAGTGATGTTAGCGCCAGTAGTGATTTTCGCTCCG 71461 29 96.6 41 ...C......................... TGTTCTGAATTTCTGCTTAATCGTTTCATGACCTACGTTTC 71391 29 100.0 49 ............................. TTCAGAACCCACATATAGAACTCACCTTTTGGTGACAATCCTGCTTCTT 71313 29 100.0 50 ............................. GTACGTTCTTTTTCAGAAAGAACATGGTACATATTAAAGAGCGCTTTAAC 71234 29 96.6 46 ...............A............. TATTTACAGTCCGCTGAATTACCAATTATTCTACCGGCCCTATTTT 71159 29 89.7 46 ...........T.C..............T TAGCAACAGCCCCAAGAACAACAGTAGAGATCAAAGCGATACCAAA 71084 29 100.0 49 ............................. GCCTTGTTTCTTTTTCTATTGCACTAAGTTCTTTTATGTTTTTTAGTAC 71006 29 100.0 37 ............................. GTTATGGTCTGTAGAATATTACTTTATCCTTCTTTTT 70940 29 96.6 43 ..A.......................... ATAACGATAGGGTCATCAAATTTGCAATCCATGAATATATATA 70868 29 82.8 0 ...C.....................TTTT | ========== ====== ====== ====== ============================= ================================================== ================== 14 29 96.6 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TGGAATTCATTACACCTCATAGTGACATTATCAAGAGTCCTATTCCAATCAACTGTCTGAAGGTTAAGCCTGGAATCTCTTTTGAATTTGGCTTTTATCTGAATGAGTGTCAGCTTTCAGATGGAGTTCAAATTACGGTTAAAGAAAAAATAGAGTTATTTAAAACCATCTTGACTGATGTAGGCATTGGCGCCAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGCAGAAGGGTATTTACAAATCGTATCTGAGGGAGTCGCGCAACTCAGATAGCTCGAAAGGGTATAGAGGAGTTTGTTCATATTAAGGAGCCTGAATATAAGAACGTATTTACAAAGAGCTTAGAAACAAGTGAAGTTAGCTATCGTACAGGAGTTCAATCTTAGTTGGCAAGAGCGCTAGGACAAAAAAGATCGACCGACTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTTGTT # Right flank : ATCCAACTGAAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATCTTACTCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATTTAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCTAAGTGGAAGAAACTCAGCCAAGATATCAATGAGCTCCCCTATCTAAACTTAGATGATGCTGAAAAAAGCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGATCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAGTGTTACGACCTGACGCTTGACTATATCATGCTTCGTTATTTACCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //