Array 1 14104-14674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14104 30 100.0 36 .............................. GGGGGTCCCAGCGGACGCAGTTGTTGTAGACGTCGG 14170 30 100.0 38 .............................. ACGGCTTCGGGGTCGCCCTCGCCGACGTGCCTGGCCAG 14238 30 100.0 37 .............................. ACCTGGGCCAGGGCACCGTCCTAGTCATCGACCGGGC 14305 30 100.0 38 .............................. GCCGCCTGGCCATCGGGCCGCACACGGTCCTGCTCCAG 14373 30 93.3 38 A........C.................... GCGGGCACCGGCCCCACCCGGTACTCCTCCCGCATCGG 14441 30 96.7 38 .........C.................... GCGGCGAGGATGACGACCTTGTGCTCGTCGCACACCCC 14509 30 96.7 38 .........C.................... AGGCCGAGGCAGGCCAGGGCGTCGCTGCCGCCGATCCC 14577 30 100.0 38 .............................. GCCCGCACCGGTACCGCCCGTAGACGCTGGTGATCGGC 14645 30 73.3 0 ........TC.T...GT.....GG...G.. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 95.6 38 GTCCTCATCAGCCCTACGAGGGATCGCAAC # Left flank : AGGTTGTCGCCCCAGATGGGGTAATCTCCTTGAGCGTGCCCCACAGAGCGGCGGCACCCGGGCCTATAGCTCAGTCGGTTAGAGCGCATCCCTGATAAGGATGAGGCCGGTGGTTCAAGTCCACCTAGGCCCACCGGGTTTTCTCAGCTCAGAGGCCGGTTCCGATCATGTCGGACCCGGCCTCAAGATCTTTTGTCATCAGGATGTCATCGAGACCCCGCACGATCATGCCGGACCTCCCGGCACGGAGCCCCCTCGACGCCCCCTCCCGCGGACTCCCCGGATGGACACCCGGACCGCGCCGGCCACCGCCCGCCAAGCCGCCCAGAGGCTCGACGGCCTCGGCTGCAGGCGAGACGGCAGGCCACAAGGCTTCTGCGATGATCACGATGGGGAATTTCAGCGAACCTCCCGGCCCAGATGCACGACCGGAGGTTCGCTGCAGAACCGAGCCTTCGTGCCCCGCTGTTCCCACCCCGGACCTGGCGCTTTACTCTGGG # Right flank : CGGGCGAAGCTGTAGTTGTCGCGGGTCTTCAGGTGCGGCGCTTCATGCTTGAACGTGGCGAGGTGCCGATTCCGCTTCTCGGTCGTGGTCAGATCCCGCCGCCCTCAGCAACAGAGGAACGGATCTCCACCGCCGTCTCGTTCTCCGGGGTGTTCATCTGCGCCAGGGCCTCGGGGTCCGTCGCTCTCCAGTCCTGGATCACCCGGCTCCCCGATCCGTCCGGTAGATGCTCGGGCAGTCGTTCGGGTACGAGTCCGGGTCCTTGCCGAGGAAGGTCGAACGCACAGCGGCCCCCTGTTCATAAGCGTTCGATGCCGGCCCCTTCCGGGAAGCCGCTTCACCGCTCCACCACCGTCAAGAGCAGGCGGACGGGACTCCCCTTTCAGCAACACCGCTGCTCATGTCTCGATACGTCGGCCGCGTTCATCACGCCATGCCGGGAAAGCCGCGGCGGATGCCGTAGTGGGCGTCGACCTCGTGGATTCTGATGAGCAGGTCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTACGAGGGATCGCAAC # Alternate repeat : GTCCTCATCCGCCCTACGAGGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 19449-19901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 19449 36 100.0 36 .................................... AGAAAACGGCTGCACTTCGCGCCGATCTTCCCTCGT 19521 36 100.0 33 .................................... TGCGGGATTCGCAGGCCTTTTGGAGTGTCGAGG 19590 36 100.0 38 .................................... GCGAGGATGTCTCGTGGATCCTCTGGGACGCACTTCGC 19664 36 100.0 31 .................................... CTGAGGGCGCGCTTGGGCAGCTCGTTGGCGA 19731 36 100.0 34 .................................... AAGACCCCCCATGGTGAGTATCAGTAGGGCAGCA 19801 36 91.7 30 ................................GGC. GGATAAAGTCGGCTGCCATTGCCGAATCTG 19867 35 75.0 0 ......G.........-..GT...G.AA..G..G.. | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 95.2 34 GTCCCCAAGATCCGCAGAACCGCATCGGATTGAAAC # Left flank : CCGGCCGGGGCATCGCCCACGCCCTCCACGACACCCTCCTGCGCGCCCGCCCCGAGCAACGCGCCACCCTGCTCGTACGCCCCGACAACACCAACGCCTACAACGCCTACAAACGCTGGGGCTGGCGCAAGGTCTCCCGCCTGCGCCCCGGCTGGCCCGACGCCCCCCTCATGGACGTCCTCATCCTCGACCTGCCCCTGGCCCCCGGACTATGACCGCCTCCCGGCAGGACGGAGACACGTGATGCGAAATCCGGCACGTGCGATGCATCTCGACCATGGCGCACCTATGTCCCTCCCCAACGAGGAACAACACCGGTCCCAAACGAAGACCACCGCCCCGGCGCCCCTCACAGAGGTTGGCGCACACCCTCTACAGCGGGGTGACCAGGCAAAATACCAAAATCAAGATCCATAACGCGACCTTCCAAGATCGCCCTCACGGAGGTTGGCGCATGATCTTGCAAACTCGCAGGCCACAGGCCCATAATCAGGGGTGCT # Right flank : CCCCTTCCTCTGGGTGGGGCCTCTGGTGGTTGGTGACTCCTGTGATCTGCGTATTCATGGCAAATGAATGCATTCTCTCGATGAGGTTGTCGCTCATTTTGAGGGATCTCGGATCTGGTGAAAATGAAACGGGCCGAGCAGTGTGAGGGTGCGGTTCACGGTCTGTCCGCCGACCGGTTCTCAAGACATGCGGGGCGTCGGGTCGGCGGCGGGTGCGGGCGTAGGCGTGCGCAGGGGATGTGGGCCGTGCGGTGTCGCGTTCCGGTCACGGGAGGCGGTCGCGGTCGTTCCGGTTCGGTGAGGTGGGATCCGCCTTCGGGGCGATGAAGGCGCGGTGCGGGGTTCCCGGGTGCTCGCCGCCTCGACGCCGCACTGCTGTCAGGGGCGGGTCGGGCTGGGGAAGTTCACCAGGGTGGTGTCGTCGGCGAACGGCGCGGGTCCGCCGGGAGGGTTCGTCGCGTGGGGCGGGGCCGTGAAGGGCCGGATGAGGCGGGGCCTGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCAAGATCCGCAGAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 3 24952-24254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24951 30 100.0 39 .............................. ATCTGCTGGAGGCGCTGCCCGGCGGCACGTCCGGCACCG 24882 30 100.0 36 .............................. ATCATGCGGCGTTCCAGCGGGCGCGCCTCCTTCCAC 24816 30 100.0 37 .............................. GACGCCAATGGGACGTGGGAGAAGAAGCTTCAGGAGG 24749 30 100.0 38 .............................. CGTGTTGGCGAGCATGAACAGCACCGACTTGGATCGGC 24681 30 100.0 35 .............................. ATGTACCGGTCGTCTTCCTCAACCGACTTCGTACC 24616 30 100.0 37 .............................. GCGCTCTCGCGCTCGGGATGGTGGGCCAGGTGGCCTA 24549 30 100.0 35 .............................. ATCATGCGGGTGTCGCAGGCGCTGCAGGCCCAGAA 24484 30 96.7 38 ........................T..... AACGGGTTGCAGCCGCACCAGTCGCCGCCCTCACGCTG 24416 30 100.0 38 .............................. TGGCAGATTCTTGCCGATGCTGTTGATGAAGTTCACCA 24348 30 93.3 35 ..........A......A............ CGGGGGACGATGAGGCGGGCCTTGCCCAGCTCCAC 24283 30 93.3 0 ......................G.....G. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 98.5 37 GTCCTCATCCGCCCTACGAGGGATCGCAAC # Left flank : CTCGTCCGCCGCCTGGTCACCCTGGTCACAACAGCGGACATCGCCTGGACCGAACAGCTCATCACCCCGCCCGCCCGCTCCGCATCCGCCTCTGGTCAGGGCACCAGCCGCAACCCGACACAGAGCGATCCGTCCCCGGCATGAACGGCCCGGACCAAGGAGCCGACATCCACCCGGCCCCGCCCCACGAGCCGATCGGCTTCATTCACCCTCAACACCCACGCGAGGGGACGTACCCTCACACCATGGCGGCGGTGAACCGGATGCCCAGCCCGTCTCCCCACGGGGAACCGCAACGCGACAACGCCGGAACCCTGGTCAGCCGGCCGTGCGGACGTGTATCCGGACCGCGGAGCCCCGGGGCAAAACCTCCGGCGTACGTCCACTCCCGATGGGATTTCAGCAAACCCCCCGGCCCGGACGCACGACCGGAGGTTCACTGCAGAACGGAGCCACATCCGCCTCTCTTCGGCTACTCCGACCTGGGGCTTTACTCTGGG # Right flank : ATCGTGGTCGGCACCGGCTGCTCCCGCTGGTCGGACTGTCCTCATCGGCTCCGCGGGGGACGTTGAGAGTTGTCCCTGCACACGTCCCGGCCGCGATTCAGCAGGTGCGGCAGGTGGAACGTGACGTCGGCGAAGATCGCTCGGGGGATCCACGATGGTCGGTACGAGCCGGTCAACGCGCCGTCGCCGAGGCCCATCGGTGTAGTCGTTCCGCAAGGAGCCGAGTGTCCGACGTGCTGAGGGCGGCGGCCACCCGACAGTCGGCAAGAGTCGCGGTGAGGGACGTTCCGTCCGGGGTCGGCTGAACGGTCAGCCGTAGCAGTTCCGGGGCCGGAAGGGGAGGTCTGCCTTCACACACCAGGTGATGCGGCTCAGGCAGTGCGGCGGGTCTGCCCTCGCCTGCCGCGGTCAACATGGCGGCGAGGGCCGCGCAGGTCGAGGTGCCGTCGTCGGCTGCGGCCCGGATGGTCAGGGACGTTCCGTCGCCGTGCAGGGTCAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCCGCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 37832-38327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 37832 30 100.0 37 .............................. GCGGCGGCCTGCACGGTGACGTCACCGCCGCGGATCG 37899 30 100.0 38 .............................. CGGGGGGTGCCCTTGATGTCCATGATTCGCAGGACCGG 37967 30 100.0 35 .............................. ATGGTGCGGGCGCCGTGGACGGTCACCCACCGGGC 38032 30 100.0 37 .............................. AGGTAGGAGGGGGTCAGGGGAGCCAACGGGGCACCTC 38099 30 100.0 35 .............................. ACCTCGGGCAGGTCGACGGGCTCGGGGAGGGTGAC 38164 30 100.0 39 .............................. ACTGCTGTTGCGCAATCGATTCGAACATGTATCGCAACA 38233 30 100.0 35 .............................. GTGGTCAGTGGAACGGCGAGCATGGGCACGCCGTA 38298 30 73.3 0 .C.......A.....G......G.T.TG.G | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 96.7 37 GTCCTCATCCGCCCTACGAGGGATCGCAAC # Left flank : AGGCACCGCGCGGCGATCGGCACACCGGGGAACCGCAGCTGCGGCCCGGGGCGGCCCATCTGCGCCACCGGGAGCATGTCGCGGGTCCGGCGGATGAGCTTCGCCAGCGCGGAGGCGTCGAGCCCGTCCCACTCCACGGCCTCGCCGACGACGCCGCACACGTCCAGCCCCGGCGCCTCCCGCAGCGCCTGAAGCGTGATCCGCGTGACCAGCTCCCGCCCGATCTCAGGCTCCCGGACCAGCGCGGTGATCCCGCCGGCGTTCGCGGTCACGATCTCCACCGGATGCTCGATGATGCTCCGGTGGCGCTCCCCGCCGCCGGTGACGGCCCTCAACGCCTCGTCGAGCCACCCCTCCTCGACCCGGGTGATCAGATACGAGGCGCCGACGTTCTCCCGCCGCTTGTTCGAGGCGAAGATGAACCGCTGGTTGCCGGACGTGGCGACCACGACGACATGGACCTTCACGCGAGTCCGCCATCGTCACCGAGACCCCGCAGC # Right flank : GCACCCCGACTGTGGGGGCGTTGCGGGGGAACCACACTTTCGGGTGGCGTACGTTCCGGCGGACTGCATGATGCCGCGCGTGTCGTAGTGCAGCGCCTGGCACCGGGGAGCGTTGCGGCGGCGGCACCGCCCGGCATCCGAGCGAACGGCGGTCCCGGGGTGCGTGGGGCTCGCCATCAGCTCGGACGCAGCGGCCACCACAGATGAAACGCGATCAAGACGGTCAGCACGACGCCCACCGGCAACGTCAACGCCGTGACGGCCACCCAGCTGCGCACCGTACGCCGGTCACGAGGCAGCCCAGCACGCAAGAGCCACAGCCACGGAGCCGCGAACCAGGCCGGCAGACAAACCTGAGTCAGCACCGACACCGGTGCGCACGAGGGGTACTCGTAGTAAGTGAGCGGATCAAGCCCACACGCATGCGACTCCAGCGAGAACAGCGTCATCGTCCCGAGCAACGCGATGACCCAGAGCACCACGAACACGAAACCGACCAG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCCGCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 1044757-1045048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1044757 30 100.0 37 .............................. TTGCTCGCTGCTCGTACATGACGTGCGCTCGGAACCA 1044824 30 100.0 35 .............................. AACTGCTGGACGGGACGGTGGTCCTCGACGAGCGC 1044889 30 100.0 32 .............................. TCGGCGGTGGCCTGCTGCCGCTTGTACGTCAG 1044951 30 96.7 38 ................T............. GCGAGCTGGCCGGTGAGGATCCGGCGGACCGCGCGCAG 1045019 30 83.3 0 ......................GCT.AT.. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.0 36 GTCCTCATCCGCCCTACGAGGGATCGCAAC # Left flank : CGGCGCGCCACCGAAGGCGGTGCATCGTCCCAGGTGAGAGCCGTTCTGACGGGTCCCGCAGACGACCTGCGGCAAGGGGTTCGGCGCTTGCACTCGGCAGGGTGGAGTGACCAAGACGAGGGCTGACCGGCCCCTGACCTGTGAACAGGCGGCTCCCGAGCGCTGTTCGAGGGCGGCCTGTTCCGCGATTGTTCCGCAGCCCATACGCCGGTCCGGAGTGCTCGTCCGCGCGAACGGCGGGATGGTGTGACGGACAGCAGCGCGCGGGCGGGCACTCCGGCTCGCGGGGGGTCTGGGGGGGCGGTGGAGCCCCCCGGGTGCACGCTCGTCGAACCCGACGACAAGACAGCCGGATCGGGTTACCGTGACCGGAATGGACCTGCCCGTCATCCCGGGATTGCAGCGAACCTCCCGGCCCGGATGCACAACCGGAGGTTCGCTGCAAAACAGCGCCGCCGCCGACCCGTTTCGGCTTTGCTGGCCTGCGGCTTTACCCTGGG # Right flank : CTTGCGATGGGGTCCTGGGTGGCTGTGGCTGGTACGCGGGCCGGCGGTTCGCCGCCCGGGGACCGGCGCCCACGCCGCACGCGCCGGGCGGCGTGGCCGGCGGGCCGTGGCGGCGGCGCGCAGCGCCGCCGCTCTTGATCCCAAACAGCCCAATTCGGCAAAGCCTAGACACTACTGGGCGTCTGATCCGTAGCAAGATCAACGATGTCCCTCGCACCCAAGATCGTTCATGTCCGCTGTTAGCGTCAGTGTTGCAACCTGATGCCTACAGAAGGCTCTGATTGGAGGGAAGAGGTTCGGAGCGCAGGGTCCGTTCACAGCTCAAGCTCTGGAAGCCCGCAGCATCGGTCTTCTCATCGATCAAGCCCCAGCCAACAGTGATGATCGCCCTCGGGGCTCAAAGCTAGTGAGCTTGCCGCTAGAGACTTGTTAGCAATGGCCATATTTTCGGACGTTCTCTAACGTCACTAAAGGTCGCCCATATTTCTGTCTGGATAGGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCCGCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 2116359-2116918 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2116359 30 100.0 37 .............................. TCCGGTGGGCACTGATGGCCGAGTCGTGTCCCGTAAA 2116426 30 100.0 36 .............................. AGGGAAAGCTGGTCAGCCACGGTCGGCTCCTTCCGG 2116492 30 100.0 35 .............................. ACCCAGGCGCGGATGACCGCCCGGGCCCGGTCCAG 2116557 30 100.0 38 .............................. GGCCGCCGATGATCTCGGCGACGCAGGTGGCCTGCGGC 2116625 30 100.0 37 .............................. AGCTAGAGTGCCGACCACGTTGGGCCAGCGAATTGGA 2116692 30 100.0 38 .............................. CAGCCGTTGCGGCAGGTCTCGCAGGTGCTCGCCTTGAC 2116760 30 100.0 33 .............................. GTCATGCGTTCGTCCTCGGGCATGCCGGGCGGA 2116824 30 96.7 35 ..........C................... TGGATCGCGGCGATTAGCGCCCGGGTGGGGGTGTG 2116889 30 90.0 0 ......................G...T.G. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 36 GTCCTCATCGTCCCTGCGAGGGATCGCAAC # Left flank : GTGACCTGCGGCGGTGGCGTGGGTGGGGTGCTCGCTGCGCGGTGTGGGTGGACTGATCCGGCATTTGGGCGGGGGCGGAGGCCGCTTAGCCTGGCCTGGGCGAACGGGCACCCGTGGGGCTGCCCGCCGCTGGCCGATGGTGCGGCCTCCGCGAGGGGTCCCCGCCCAAAGGACGGATCCGGCCGCCCGTGCCAGACCTCGGCCACCGGGTCCGGTGTGAGGGTCCTCAGCGTGCGGCGCGGGTGTTCGGTTGCCGGGCGCGGTGAGGGTCGCCCTAGATGGGCAGGGCCGCGAAGCGGCGGCCGTTGTAAGGGTGGGGTTGGTGGGGCGGGTGTGGGTACCAAATCACCCTCAGCGTTGGTCGCCTGGCTGCGTTGGGCGGGTCGGCAACCGCCGATTGCAGCGAACCTCCCGACCCGGATGCGCAACCGGAGGTCTGCTGCAAAACAGGGCCGCAATCGGACGACTTCCCTCCCTTTGGCCTGTGGCTTTACTCTGGG # Right flank : CGTTCGGGGGAGGTTCGCTAGCGGGCTAGCGGACCTCCCCCGCTTCTACAGGGGGACGCGGCACGGGTCCCGGCTAGGGGCCGGCGGCGTCGTGCCTGGTCGCAGGGTGTGCTGATGTCCTTGGGCTGGTGTCGGGGAAGGTGACATCCTTACGGCTTGGTGGGCGATACTGACCGGTGACCAATCTCGTTTGTGTCACCTGTTCAGAGGGGTCGGCCAGCACATGAAGCCTCGGTACATCGAGGGACTGCTGAAGCATCTGCTCACCGAGTACGCCAAGGGGGATCAGGACGGGGTTCCGGACAGGGCTCGGATCCGTGAGGTTGTGACCTTTGAGGAAGCAGGCTTGACGGACAAGCCGGTAGGGCTTCGTATCGAGTGTGGGGACGGGAGCAGGGTGTTCATCCAGTTCCTAGGGACCTCCCCTGCGGGAGGCAACTACCCCGAGGAACCGCACTACTACCTGTCGCCCGACAAGGTCGGAGCCGAGCGCTACGGAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGTCCCTGCGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 2739608-2739189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2739607 30 100.0 34 .............................. AGAGGGGGGAACGGCCCCCTCGGGGGGTGGCGCG 2739543 30 100.0 35 .............................. GCCATCTCCCACACCAAGACGGCGCTGTCGTCCAT 2739478 30 100.0 34 .............................. TGGCAGCGGGTCTTGCTCCAGCCGTACTTGACGT 2739414 30 100.0 35 .............................. GGCAGGTACGGCATGGCGATGACGTCCCGCTTGCT 2739349 30 100.0 36 .............................. CACTCCTCCTCGGTCTCCAGCCGGGCCTGTTCCAGC 2739283 30 100.0 35 .............................. ACGAGCTGGCGGCGTTCTTCGGTCAGGGGGTGGCG 2739218 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 35 GTCCTCATCCGCCCTACGAGGGATCGCAAC # Left flank : CCGTTCGGCTGGTGGTGGCGGGTCCAGGATTCGAACCTGGGTAGGCGAAGCCGACGGATTTACAGTGCGCCATGGATGTTGAGGTTTCTCCCCCGCCGACCTGCACGGAATCCCGAGCGGCCTCCCCGTCGCCGCGAACGCATTCCGCGTATTTTCCGGATCATGGGACCGGCACCCTCTGCCCGGCGCCAACCGTCACGGATGCTCCTCGCTCCGGAGTGCTCGTTCGCGCGAACGGCGAGACGGTGCGACAGACAGAAGCGCGCGGACGAGTACTCCGGGTCGCCGGGGGTCTGGGGGACGGCGGAGTCCCCCAGGAACGCACTCGCCCAACCTGGCGACAAGGCGTCCGCCGGCGGGCTACCGTGACCGTGATGGACCGACCGCCAGTCGGGGATTGCAGCAAACCCCCCGGCTCGAACGCACAACCGGAGGTTCGCTGCAAACCAGGGCCGCAACCGATCGGCTTCAGCCTTTCTGGCCTGCGGCTTTACCCTGGG # Right flank : TGGTGGACGACGCCGGTCCATCCACCCGGCGGGTGGCGGCCTCATCCGCCCTGTCAGAGGCTGTTGTTCCGTGCCGAGCGTTCTTGACCAGGCTGGCGTTGGTGGCGGCCCGCCGGTTCGCCGCCCGGTGACCGGCGCCCACGCCGCACGCGCCGGGCGGCGCGGCCGGCGGGCCGCAGCGGCGGCGCGCAGCGCCGCCGCCTTGATCTCAAAAAGCTGAATTCGGCAACGGTGCGAGGGTCGCTAGCTGTTCATCTTCAGGAGGGCGCGCATGGTCTCGGCGGGGGTGACGCAGCGGAAGCCGGTGTCATCGTCAAGCATGTCGGCGGAGGCGTCGTTGAAGTTCGCAGGCGTGCAGCGTTTGAACGGGCTGGTGAAGGCACTGCCCTTGAGTTCGTAGCGGCCCGGCTCGGACTGGGTGGAGCACCACTCCCAGACATTGCCGCACATGTCGTAGACCCCATAGGGGCTTACGCCGCTGTGGTAGCGGTTGACGGGGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCCGCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 8 4903922-4900841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4903921 29 100.0 32 ............................. GGCGCACCCGGCCGGGGAGACCGTGATGCGCC 4903860 29 100.0 32 ............................. GCCTGGCCCGCTCCCAGGACCAGCGCCGCAGG 4903799 29 100.0 32 ............................. ACGTGTGCGAATCGCCGTTATCCACAGGGTAA 4903738 29 100.0 32 ............................. CTGGATGGTGACGTTGTCGCGGCGGGTCTCAT 4903677 29 100.0 32 ............................. GAGCAGGTGCTGATCACCCCGGCCGGGCTGCT 4903616 29 100.0 32 ............................. TGGGTGACGGGCTCGGTGGCGATGGTGATGCC 4903555 29 100.0 33 ............................. GGAGACCACCATGACCGAGGCAGAACGCATCGC 4903493 29 100.0 32 ............................. TTCGCCGCGTGGATGAAGTCCGGCGCGATCGG 4903432 29 100.0 32 ............................. GCCAACCTCGCCGTCATCGAAGCCCCCGCCTA 4903371 29 100.0 32 ............................. AGACCGAGCGGCTCGCCGCCGTGCGGGAGGTC 4903310 29 100.0 32 ............................. CCCTTACTACCTGCGGAAACGTTGTCGGTGTT 4903249 29 100.0 32 ............................. GGGCGCAGAAGCTGGGGCTGCTCGGCAAGGAC 4903188 29 100.0 32 ............................. TGGCCACCGCGGCGCTGCTGTCCCGCAGCGGC 4903127 29 100.0 32 ............................. GTACATGCCGCTTCGCGCCCTTGCCGACAATC 4903066 29 100.0 32 ............................. CAGGGCCACAGCCACAGGGGCCAGACCGGCCG 4903005 29 100.0 32 ............................. CGCTCCACCCGGCTGCCCTTCCAGGCGTCCGC 4902944 29 100.0 32 ............................. GCGTTCTTCGGGCGCGCAACTGGGGTTGGTGA 4902883 29 96.6 32 ............................T CGAGGCGGTGCGGCCGGCCGAGTTGCTCGAGG 4902822 29 100.0 32 ............................. GCCTCCTAACCCTGTTGTACGGGTGCGCCTTC 4902761 29 100.0 32 ............................. AACTTCTACTTCATGGGCCTCAAGGACGGATT 4902700 29 100.0 32 ............................. TCGCCATCCGCATTGATGTAAAGGAATTCGTA 4902639 29 100.0 32 ............................. CGCCCGGCCGGGGAAAGTTCCTGGTCAAAGTG 4902578 29 100.0 32 ............................. TGTATCTGGTGGAACGCACGGACAACGTCTAT 4902517 29 100.0 32 ............................. CCTCGGTAGATCGTTACCGTGAGTAACCTCAA 4902456 29 100.0 32 ............................. CATGCCTCCACCTCGCCGATGCGCGCCAGCAA 4902395 29 100.0 32 ............................. GGCGAGTCCCTCGAGGAGGTCGCCGCCCGTCT 4902334 29 100.0 32 ............................. TTCGCAAGGGAGGCCAGACGGCGGGCTCTGGT 4902273 29 100.0 32 ............................. GCCGAGGTCAAAGCCCTCAAGAACGAGAAGGA 4902212 29 100.0 32 ............................. ACCGGGCGATCATCGGACCGCTGGCCGTCGAC 4902151 29 100.0 32 ............................. ACCCAGCCGCCCCGCTTGGTCTGCCAGACCTG 4902090 29 100.0 32 ............................. TGGTAGACCCGCGGACGTCGGTTCTCGAACTT 4902029 29 100.0 32 ............................. GCCACGACCAGGTCGTGGGGTCGGGTCCGTGG 4901968 29 100.0 32 ............................. TCGTCGTGCCACGTGCTGTGGTACTTGCCGTA 4901907 29 100.0 32 ............................. GTTGACGTCCACGATCAGGCTGGCGCCGGTGG 4901846 29 100.0 32 ............................. CGGCTGTCCGGTAGCCCGCACGCACTGCCGAT 4901785 29 100.0 32 ............................. AACTGCGTGTCGTCGCGGACACCGTCGTCATC 4901724 29 100.0 32 ............................. GCCGAGCCGGATGTCGGGCCGTGGCGGCACCC 4901663 29 100.0 32 ............................. GCCGGGGTCGTACACGTCGAAGGCGGCGTGCG 4901602 29 100.0 32 ............................. CAGGAGTCCTACAAGCGGTACCGGCAGCTGAT 4901541 29 100.0 32 ............................. CAGGAGTCCTACAAGCGGTACCGGCAGCTGAT 4901480 29 100.0 32 ............................. GGGAAGATCGGGGCGCTGGAGAGCTGGGCCGG 4901419 29 100.0 32 ............................. CCGGGCAGCGCCTCGGTAAGCGCCTCCAGCTG 4901358 29 100.0 32 ............................. ATACCGCAAGAAAACACAAGTGCTCATGTCAC 4901297 29 100.0 32 ............................. CACGCGTCATTGGGATCGACATCTCCCTGCGC 4901236 29 100.0 32 ............................. GCTGGAGGTGGCGGTGGCGGGGGTGCGGTGGT 4901175 29 100.0 32 ............................. TCCGTGCTCGAGCCGGTCAGCGCCTTGTCGAG G [4901160] 4901113 29 100.0 32 ............................. TACTACGTGCAGGCTGCCCGCCCCTCACAGAA 4901052 29 100.0 32 ............................. TGGCGATCGAATGCGCCTGGTTCAATCTGTCC 4900991 29 100.0 32 ............................. CGGCCGCTGCACTGGAAGTGGGGCGTGCCCGA 4900930 29 100.0 32 ............................. GCGGCCAGGTCGCTGGCCCCGCTGATCAACGT 4900869 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.9 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CAACATCAACGGCGCCGTGCTGATCTTCACCCTGGTGACCGTGCCGGCGGGCATCGCGCTGGCACTGCTCCAAGTCCTCAGCGCCAAAGACCTCTGGATCTTCACCACCGTCTTCGCCACCTGCCTGCTCCTCACCGGCCTCCTCCTGGCGACCGGCCCGGCCCGATCCGTCCTCCGCTCGATGCGAAGTCCTCACAAGCGAGCCATCGACACATCAACCCGCCGCCGGAGGCTCAACGCGCCGCGGGATCATGCTTGAGAGCAGACACGTACCGACTCAAGAGCTGCAGACCGAGCCGCCGGTCCACCACGCCGACGCACTGCTGATCCATACTGCGACTCCAGCAGCACCCGCCACATCGAGTTGTCCCGACCACCATGCCGCAGGCACTCTGAACCAACAACGAAGTCACCCAAACAAAGCGATGACCGAAATGCCCGAATCTGCAAAAGTAAGGAATTTCGCCCCCACCCCGCCATAAACCCGCAGGTCAGCAAGT # Right flank : TCCTCGAACGTGAGCCTGTGTCAACACGCGCGAATCCTGACTCAGGCACAGATTCCGTGAAGGCGCCGGTCGGGTAGGTCACGGTTCGGGTGTTCTCGTCGGTAGCCGACGTCTTGATCACCGGCATCGCCGGTGTGTCTATCAAGGAGTTGGTGGCCGTCTTGTTTCCTCACCTGGCCCGCGTGTGCGTGGACCAGGTGTTCCGTTCCGGAGCCTCGGTGCGCATCCGGGCCAGAACCGCGACGAGCGAGGCCAGGTGCCAGGCTGTGGGGCGCTGTCGCAGCGCAGACACAGCCACTATGAGCAGCGCCTGTCCGACACCGCGGTCGGTAACCAGGAAGTACTGATCCACCTGCGGGTTCACCGGTTCTGGTGTCCCAACGACGCCTGCGACAAGAAGACCTTCGCCGAGCAGGTTCCGGGCCTGACGTTCCGCTACGGCCGCCGCAGCATCACCGCAGGCGAAGCCTTGGGGGACATCGCGCTGGCATTGGTCGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 4911280-4909235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4911279 29 100.0 32 ............................. ATCGAGTCAGCCGAGACAACGACCCCCGCAGT 4911218 29 100.0 32 ............................. AACGCCGCCTAAGACGAAGCCCCGGCCTGGTT 4911157 29 100.0 32 ............................. GCAGCATCCACGCATCCGGTGACTGGGCCTAC 4911096 29 100.0 32 ............................. GACGCCGCGGGCATCCGCATCTGGCAGGCCCA 4911035 29 100.0 32 ............................. AGCAATAGGCCGATCAGGAGTGCCGCGGCAAT 4910974 29 100.0 32 ............................. ACCCAGGAGATCGTCCCGGCCCTGCACCGCCT 4910913 29 100.0 32 ............................. GACCCGAAGGCGGCCCGCCCCCACCCGGCGCC 4910852 29 100.0 32 ............................. ACCGACAGATTCCGGCGGTGCTTGTCGGCGTT 4910791 29 100.0 32 ............................. TCCACGTCCCCGCTGACGCGCATCGGCTGCCC 4910730 29 100.0 32 ............................. CTTCTTGCGTGCGGCGGCGGCGGCCTCATCGG 4910669 29 100.0 32 ............................. GCGACCTTGCGCAAGAGGTCGAGGCCCGTAAG 4910608 29 100.0 33 ............................. CGCTGTGCGACCTCGACGGCGCTGAGGACTTGG 4910546 29 100.0 32 ............................. GCTCGGAAAGCTTCTAAAAGCTTCTAAGAGCT 4910485 29 100.0 32 ............................. ATTGGGGAACATTGCAAGGCGGTTCAGGGCGG 4910424 29 100.0 32 ............................. CGTTCAAGGAGCTGCAGGACCTGGCGGCCGCG 4910363 29 100.0 32 ............................. CTCCCCGGGTCAGGCCGGGATGACGAGGTTCT 4910302 29 100.0 32 ............................. GGCACCGGGACGACGAGCCGGAACTTGATGCC 4910241 29 100.0 32 ............................. TGCAGGAACGCGATCCGGGCCAGACGAACCCG 4910180 29 96.6 32 ..............T.............. CGGCCGACGCGCTGAAGCTGCGCCTGGACGCT 4910119 29 100.0 32 ............................. TACACCTACACCGCCTGACCCGGAAGGGAACC 4910058 29 96.6 32 ............................G CGTGGTGGGGCGAAACCGAGGAGAAGGTCTGT 4909997 29 100.0 32 ............................. GACACGTCGGCGAAGTGGTTCAACATGACGTC 4909936 29 100.0 32 ............................. GACACGTCGGCGAAGTGGTTCAACATGACGTC 4909875 29 100.0 33 ............................. GATCACAACGGAGCAGGTAACGGCAGGGAGACG 4909813 29 100.0 32 ............................. CCGGCCGACTGCCGCCCGCACGACACGCCCTC 4909752 29 100.0 32 ............................. GACTACCCGGCCCGTTTCACGGTCGGGCGCCT 4909691 29 100.0 32 ............................. GGTCGCCTACGCGGCGGGCATCCCCGTGTCGG 4909630 29 100.0 32 ............................. GCGAACCTGCTGGACGCCCCCGACATCGGCCG 4909569 29 100.0 32 ............................. TGCTTCACCGGTCTGCCCTCCGCGCCTCCGAG 4909508 29 96.6 32 ............................T TTCATGGCCCTCGCGCAGAAGAAGGAGCAGCT 4909447 29 100.0 32 ............................. CCGCCGCCCGACAGTCCGGCGGCGCCCGTCCG 4909386 29 100.0 32 ............................. GGCCGGCTCACCGCGGCGGCGGCCATCAAGAT 4909325 29 100.0 32 ............................. AAGGCCGAGATCAAGAACGTGGGTAAGAACGG 4909264 29 93.1 0 .........................C.T. | G [4909243] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTGGTAGCCAGCCACACCACCAGCCGACGCGCGTCCTCTGCCTTTCCCGGCATCTCCGCCGCGACCAACCGCTGCACCTGCCAGGGAACCCACTCGTCCCACAGCAGCCCCGCGACGGCGCCACTGTCGGCCATGTGCCGCCACAACGGCAGCCATCCACCAGTCGCGTGATCATGCTTGGCCCACACCGCCCGGGCAGCGGCCGACAAGCCATCCCCCAGCCGAACCGACCCATCCCCGTCAGGCATGTGCACAGTCAAGCAGGAGACACAGGACTATGCAGAGTTTTTCCAGATTTCGTCTGACACTTCTCTTCACAGAAGATCTTGGACCCCAGCCCGACCGCCGACCCCACGGCCCAACCCAGCTTGCCCGCGCCACCAGGTCCAGGCACGCTGTATCAGCAATCAAGCCTGGAACGAAGCGTGTCCCAAATGTCCGAATCTGCAAAAGTAAGGAATTTCGCCCCCGCCCCGCCATAAACCCGCAGGTCAGCAAGT # Right flank : TGGCAGCAGGGGTTCGGGCTCTTGCGTGTCGGTTGTCTCATTCGCTTTCAGAGGTCACCCGTTCTGATGCAACAGACGCGGTGCAAGGGTGAGGTGATGCTGGCTGCAGGGTCGCCATCAGCGTCAGGAGACACCGAGTCGGTAGCGATACATGGTTACTGTGACACTTGGCCGCAGGTGACGCAGGAGGCTGGCTGCACATGTCGGAGGAGATCGCCGCTCATTACGATCGGCTCGCGGATCGCTACGACGAGAACTGGGCGCACAGCGCGGAGTTCATCGCTTGGATGACGGGCTGCATCCTGGAGCGGCTTGAGCCAGCGCCCGGAGACCGGGTGGCCGACATCGGGTGTGGGACTGGGCTTTTCACTCAGGGGCTTGTGGAACGAGCCGGCCAGGTGGCCTGTGTGGATCCGTCGGGAGCGATGTTGGAGCGGCTTCCGGCGGGGAAGGGTTTCGTTCCGGTTGAGGCGTCCGCCGAAGATGTGGTCGAGGGGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 4920883-4923474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4920883 29 100.0 32 ............................. AGCCCCACGGCGGTGATCGACGGCCGGATCTT 4920944 29 96.6 32 ............................T GATCCGTTCGGCCTGCGCCCGCATCTCATCCC 4921005 29 100.0 32 ............................. CACAGCGGCGAGTAGGAGCCCTGCTCGTGGTG 4921066 29 100.0 32 ............................. GTGGGCCGCCCGGCGATGGAGATCGGATTCCT 4921127 29 100.0 32 ............................. TAGGTTCGGCGGGCGGTGCGGCGGGGTATCAC 4921188 29 100.0 32 ............................. TACTACGTGCAAGCGTCGCGGCCTTCGCCGCA 4921249 29 100.0 32 ............................. AGCAGCGTCCCGCCCACCGAATTCGCTCTCCT 4921310 29 100.0 32 ............................. CGAGATTCTGCCGACCCTTCGTGTAGCGGCGA 4921371 29 100.0 32 ............................. TCCACGGTCGCGCGGAACAGGTCGACGGCGTC 4921432 29 100.0 32 ............................. AGGTCGGGCCAGGTGTGCCGGGGATAACGGAT 4921493 29 100.0 32 ............................. GGGTTGTACTCCAGCTGGTCACGCCAGCGCAG 4921554 29 96.6 32 ............................T CGATGGAGCCGGAGTTCGGCATCGAGGAGGAG 4921615 29 100.0 32 ............................. TGGAGGCCCCCGACCTGGCCACCCGGCCGGAG 4921676 29 100.0 32 ............................. CCCAACACCCTGACCGATCAGTCCGTGATCAC 4921737 29 100.0 32 ............................. AGCTTGCCGACATCAGCGCGGGACAGGTAGCG 4921798 29 100.0 32 ............................. CAACGCACGATGTCGGGCACCTGGGCGACGAT 4921859 29 96.6 32 ............................A CCGCGATCAGCGGGGCCGCCTCGCCCCAGACG 4921920 29 96.6 32 ............................T GGTGACCGAGGGCGCGAGGATCTCCGTTCCGG 4921981 29 100.0 32 ............................. CGGTCGGCTCCTGGTGATGTCAGCCGCGTGAC 4922042 29 100.0 32 ............................. CGGTCGGCTCCTGGTGATGTCAGCCGCGTGAC 4922103 29 100.0 32 ............................. TTCACCTCCGCGATGGCCGGGCAGTCCCAGGC 4922164 29 100.0 32 ............................. TGCCCGCGTGAACATCCACCCCGCCGACCCCA 4922225 29 100.0 32 ............................. CGGGTGCGGGTCAACCGGGACGACCTGCGGCT 4922286 29 100.0 32 ............................. GCCACGCCGGCGTCGGCGCCGGAGCCGATGGG 4922347 29 100.0 32 ............................. ACGAAGGAGCGCGCATGTTCATGACCGCGACC 4922408 29 100.0 32 ............................. AGCGGCAGGGTCGGGTGGGTCTGCTGCCGCAC 4922469 29 100.0 32 ............................. CCCTCTATGTTCGGGAGGCTGAACGCTCCGCT 4922530 29 96.6 32 ............................T CCGATCCAGCTCACCCGCCAGGTAGGCGAGGG 4922591 29 100.0 32 ............................. GTCGGCATCAGCTCCGGCTTGCCCGGGGTGCA 4922652 29 100.0 32 ............................. GTGCTCCCGGGCGGGGCGGTCGGGTAGTACCC 4922713 29 100.0 32 ............................. AGGGACGGATGATCCCGCAGGCGGTCGCGTTC 4922774 29 100.0 33 ............................. AAGTGCCGGGGCTCGGTGACGGAGTGGCCATAT 4922836 29 100.0 32 ............................. GAACCCCCTCTCAGATGGGGATGAAACCCCAG 4922897 29 100.0 32 ............................. GGTGTGCGGACCTGCGTTTTCGCAGGCGCCCG 4922958 29 96.6 32 ............................G GCAGCGGCCTCTTCGACGGTGAGGTCGCTGGC 4923019 29 100.0 32 ............................. ATGCGCTTGCCGTCCTCGTCGACCATGCAGAT 4923080 29 100.0 32 ............................. AACATCATCAACGCCACCGAGATCCTCGTCGC 4923141 29 100.0 32 ............................. TTTCACTCTCCGTAACTACACTCGGGGTCCAG 4923202 29 100.0 32 ............................. AACAACATCGTCACCGGCAACCCCGCCCTGTC 4923263 29 100.0 32 ............................. CTCTCACTGCCCGGATGGGCGAGAATCCGATC 4923324 29 100.0 32 ............................. CACCCCAGGGGCTGATCAGGTGGGATGGGTCA 4923385 29 100.0 32 ............................. CGCGCTCGACCCAGAGGAGTCGCTGGCCCGGA 4923446 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGCCCCTCTGCACGCATCCGAGAGGCCCTCTGGCGAGAGGTACGCCAGTACGCCGGCACCGGCCGCGCACTCCTCGCCTACACCACCAACAACGAACAGGGCTTCACCTTCGAGACCTGGGATCACAAGTGGCACCCCGTCGACCACGAAGGCGTCACCCTGATCCGCCGTCCCAAGGAGAGGCCGGTGGTCTCCGCAACCCCACCACCAAGCGGCTGGAGCAAGGCATCCAAACGCCGCCGCTACGGCAAACGCTGATCCGCTCCCTTCCGCCATGACCCGATCGGGAACGTTAGCCCCTACCCCCGCAATATCCAGCTGCGTTTCCTAGGCTGGCGTCGATGCAGAGCCGAGCCGCAAAACTACCGAACTGGAACAGGGAGCCGATGGAACACCCATCGGCTCCCTACACGCATGGATCTCTGATGTTCGATATGTCCAAGTTGCAAGAAGTGATGAATTCCGGCGTCAGTCCGAGATAAACCCGCAGGTCAGCAAGT # Right flank : CGTGGCTTTGTTGGTGAGAACGGGAGCCACGTGTCGGTGGGCCTGAGAGCCAGCTTGATCGGCGACGTGGCTGTGTCGATGGGACCTGGAGCCACCGGCTCTGGGTGACGTTGCAAGGGGTACTTGTACCCCATGACCCGGTGGGCCCAGGTCGTGGAGCAGGCCCGTGTCATGGTGGAGGAGTACGAGGGCGGGGTGACGCTCCGGCAGGTCTTCTCTCCAGACCTTCGAACTGTCTCAGTTCCCTCCCTTGGCTCGGTGAAGCGAGCCTCAAGTCCTGCTCCTCGGTGTGAGCGGTCCTGTTGTCTCTCCGCACTGGCTTGAGCCGATAAGGAGGGGCGTTGGATCTGTACTTCGTGGATCGTGGGCTGGCCCGGCAGTGCCCACAGCTGCCGGCGAGCGCCGGGACCGCCGCAGCGTTGCTGGATAGCCGCGGCATCCCGGATGGGACGCCGGTTGCGCTCGATCGGCAGATGCGGCCGGTCGAGCCGTGGTGTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 6607235-6606675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032402.1 Thermomonospora amylolytica strain YIM 77502 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6607234 30 100.0 37 .............................. TCCGGTGGGCACTGATGGCCGAGTCGTGTCCCGTAAA 6607167 30 100.0 36 .............................. AGGGAAAGCTGGTCAGCCACGGTCGGCTCCTTCCGG 6607101 30 100.0 35 .............................. ACCCAGGCGCGGATGACCGCCCGGGCCCGGTCCAG 6607036 30 100.0 38 .............................. GGCCGCCGATGATCTCGGCGACGCAGGTGGCCTGCGGC 6606968 30 100.0 37 .............................. AGCTAGAGTGCCGACCACGTTGGGCCAGCGAATTGGA 6606901 30 100.0 38 .............................. CAGCCGTTGCGGCAGGTCTCGCAGGTGCTCGCCTTGAC 6606833 30 100.0 34 .............................. GTCATGCGTTCGTCCTCGGGCATGCCGGGCGGAT 6606769 30 96.7 35 ..........C................... TGGATCGCGGCGATTAGCGCCCGGGTGGGGGTGTG 6606704 30 90.0 0 ......................G...T.G. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 36 GTCCTCATCGTCCCTGCGAGGGATCGCAAC # Left flank : GTGACCTGCGGCGGTGGCGTGGGTGGGGTGCTCGCTGCGCGGTGTGGGTGGACTGATCCGGCATTTGGGCGGGGGCGGAGGCCGCTTAGCCTGGCCTGGGCGAACGGGCACCCGTGGGGCTGCCCGCCGCTGGCCGATGGTGCGGCCTCCGCGAGGGGTCCCCGCCCAAAGGACGGATCCGGCCGCCCGTGCCAGACCTCGGCCACCGGGTCCGGTGTGAGGGTCCTCAGCGTGCGGCGCGGGTGTTCGGTTGCCGGGCGCGGTGAGGGTCGCCCTAGATGGGCAGGGCCGCGAAGCGGCGGCCGTTGTAAGGGTGGGGTTGGTGGGGCGGGTGTGGGTACCAAATCACCCTCAGCGTTGGTCGCCTGGCTGCGTTGGGCGGGTCGGCAACCGCCGATTGCAGCGAACCTCCCGACCCGGATGCGCAACCGGAGGTCTGCTGCAAAACAGGGCCGCAATCGGACGACTTCCCTCCCTTTGGCCTGTGGCTTTACTCTGGG # Right flank : GTTCGGGGGAGGTTCGCTAGCGGGCTAGCGGACCTCCCCCGCTTCTACAGGGGGACGCGGCACGGGTCCCGGCTAGGGGCCGGCGGCGTCGTGCCTGGTCGCAGGGTGTGCTGATGTCCTTGGGCTGGTGTCGGGGAAGGTGACATCCTTACGGCTTGGTGGGCGATACTGACCGGTGACCAATCTCGTTTGTGTCACCTGTTCAGAGGGGTCGGCCAGCACATGAAGCCTCGGTACATCGAGGGACTGCTGAAGCATCTGCTCACCGAGTACGCCAAGGGGGATCAGGACGGGGTTCCGGACAGGGCTCGGATCCGTGAGGTTGTGACCTTTGAGGAAGCAGGCTTGACGGACAAGCCGGTAGGGCTTCGTATCGAGTGTGGGGACGGGAGCAGGGTGTTCATCCAGTTCCTAGGGACCTCCCCTGCGGGAGGCAACTACCCCGAGGAACCGCACTACTACCTGTCGCCCGACAAGGTCGGAGCCGAGCGCTACGGAGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGTCCCTGCGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //