Array 1 2126-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYO01000141.1 Campylobacter concisus strain AAUH-49UCpp-a 1108729, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2125 30 100.0 36 .............................. CAAAAACGCATTAAACATTGCTCATTTTCATCAAAA 2059 30 96.7 39 ....A......................... AACAAAACTTAAAAGAACTCTAGCTCAATTAAATTACAT 1990 30 96.7 35 ....A......................... TGTTAATAATGCTAAAGTTGTAACTAGCGACGATA 1925 30 96.7 36 ....A......................... TCAGCGTAATATCAATAGTTAGCGCATAAATCAACT 1859 30 96.7 37 ....A......................... ATTGCAAAATCTGAGTTTGATGAATTGCTAAAAGAAT 1792 30 96.7 36 ....A......................... TAATGAAGTGCTTGACGCTTCAAAAATGTATTATAA 1726 30 96.7 35 ....A......................... TTGATTTGAAGTGAATTCAAAATAATGATGCTATC 1661 30 96.7 36 ....A......................... GCGATAGTTTCGAGGGCTTTTTTCAAGCGCTGCGCC 1595 30 96.7 37 ....A......................... TCAATCGCAAATGAGCTAAAGACATTAACGCGGTTTG 1528 30 96.7 35 ....A......................... ATTGTTGCTTTGCAATAAATTTCAAGTTATCGTAT 1463 30 96.7 36 ....A......................... TTGGCAATATCAACAGCAATGCGTTTGGTAAAAGAG 1397 30 96.7 39 ....A......................... GCATACCGACCAAGCGGAGATAGTAAAGCAATAACGCCA 1328 30 96.7 34 ....A......................... GCGCCAGCAAGTTATAAAGATCGGCGCTTTTGTC 1264 30 96.7 36 ....A......................... GCTTTTTTGCCTAAACTTGGGATGTGATAGCCTTTT 1198 30 96.7 38 ....A......................... TGTCCATCCATACTGGGCTTGCGTATCTTTGCCATACT 1130 30 96.7 34 ....A......................... TCATACGCCCACGCATAGCCATCGATAACCATTT 1066 30 96.7 37 ....A......................... TCTTAGCTTCGTCCTGCCTTTGTACACTTAGAGCTTT 999 30 100.0 36 .............................. AGGCTTTTGCTTAGTTTGTTGAAATTTGCAATAAAT 933 30 100.0 38 .............................. GTAAAAATAGAGCAACAGAAAAAAGAGCGTGAAAACGC 865 30 100.0 34 .............................. TCATATAAAGGGTGGTTATAAATAGCAAACTTTT 801 30 100.0 36 .............................. TTTCAAAAGCACAAGACCCTGAAACAGGTATAGAGA 735 30 100.0 35 .............................. ACTTCAGGGTGTTTTTGTTTTGTTGCATTAAATAA 670 30 100.0 35 .............................. GATAGCTTCTTAGAACTCCTTTCTTTCTCAAACTG 605 30 100.0 38 .............................. CAATGCCCTTATTCTTGCAATACGTAGATAATTTCCAT 537 30 100.0 36 .............................. TCAATATAATCAATTACAGATTTATTATAATCTCTT 471 30 100.0 37 .............................. ATAATGAACCTAATTTAAATAAATCTCTATCAGATAA 404 30 100.0 36 .............................. TACGCAATAGACATCATTCTAAAAATATTAGTCAGC 338 30 100.0 37 .............................. TACGCAATACACCAAGCGAAATTCTTGATTTATATCC 271 30 100.0 40 .............................. GGTTATCGATCCAATATTCTTTTATCTCGATGCCATCTTT 201 30 100.0 36 .............................. AGATTATATTTCCCTGATAAACTTTATGATTATAAA 135 30 100.0 37 .............................. AAAATTTAGGTAGTGTCATTTTGATATTTGGCTTATA 68 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 32 30 98.4 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGTGCTAAGCCTTCACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGTGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTTGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGTAAACAAGCTCAAAAAGTGCATCTGCGAGGATGCGCCTTATGAAGGCTTTAGGTGTGAGTAAAATCGCATTTTAGTAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGCCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CTCATTGCCTTTATCGATAAAATCAACATCATTTAAATT # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 14567-15522 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYO01000224.1 Campylobacter concisus strain AAUH-49UCpp-a 1108813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14567 30 100.0 38 .............................. ATACCAAGCGTTAGGCGGAATGCCAAACTGCTTATCCA 14635 30 100.0 36 .............................. TAGGGCTACTATCTCGCTCATTTCCTCTCCTTGATA 14701 30 100.0 36 .............................. TCTTACAATGCAAAAAACAGCACTTGTCGGTCACAC 14767 30 100.0 34 .............................. GGCGTAGAGGAGCGAGCTAGTATAGATTTGACGC 14831 30 100.0 38 .............................. ACGACAGCGACCCAAAAATAAAAACCTGCCTTATTTAG 14899 30 100.0 37 .............................. TGGAAGGTGTAAGATACGCAGAAGACGAGCCATATTT 14966 30 100.0 37 .............................. CAGTTAGCTACAACGACAAAGGCACACACGAGAAACT 15033 30 100.0 36 .............................. TAGGGTATGGCGTCCCTACCTTTAGCTCTTTCTCAT 15099 30 100.0 37 .............................. CCGTTGTCATTGTTGCCTCCTACATCAAGACTAGGGC 15166 30 100.0 35 .............................. TTTAGGGGTGCTTTAAATGGTGATTATTCTAAATT 15231 30 100.0 34 .............................. TTTACCCATTATATTTACATCTTCGCCAAAGTCA 15295 30 100.0 36 .............................. ATGAGCTGTTTAAAACTGAAACACGAGTTAAGCCAA 15361 30 100.0 35 .............................. AAACTGGCTTTGAGAGCGAAAGCGGAAGCTACTTT 15426 30 100.0 37 .............................. TATCGTCACTCCTACCAACTTTTTAAAAAGATTAAAT 15493 30 96.7 0 .....................C........ | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : CAAAAGACGAGATGAAAGAAAAAATCTCTGATAAAAAAGATAAATTTAAAAAGAAAGCTTCTAAAACTAAAGAAGAGCTAACTTCTAGCAAAGAAGATGAAACTAGTATGGGTGAAAAAGCAAAAGACGAAAAAGACAAAGTTATTGACAAAGTAAAAGAAAAGAAAGAAAAAGCTGCTTCAAAAGCTAAATCTAAAAAAGAAAAACTTAAAGAAAAACTAGAGAAATAAAACATTTTAAAACCTGCTTGTCTTTACAAGTGGGTTTTATAAATTCATATATTTTTTGTTTTAATTATAATTGACAAAAATCATCACAATCTTCTTTAAATTTCATTGATCCGATAATTTGCTTCATTATAATCTTTAGCCAAGGTTTTTTGCTAATTTGTGCTAAAACAGCTGCCATCTAACTTTACCAACTAAAAATTTGTATGAAACTGCCCCAAAAAAACGACTATCAAAAGAGTGATTGCGGTTATCGCCAACCATGTTTGGTGG # Right flank : CTAAATGATGTTGATTTTATCGATAAAGGCAATGAGTTTCAAACTCACCCGCACTCACCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 27425-25496 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYO01000008.1 Campylobacter concisus strain AAUH-49UCpp-a 1108595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 27424 37 100.0 37 ..................................... CTTCAAGAGCCTCCTCTGCTGTTTGGCAACGAACTAA 27350 37 100.0 38 ..................................... GCTCACACTAGCTAGTGCTTGTGGCACCTTGATGTAAG 27275 37 100.0 35 ..................................... CTTTGACTACTACATTGTAGTAGCCCCTATTTGAA 27203 37 100.0 41 ..................................... CTCTGATAGCTTCTTTACTTCTCTCAAACACTCCTCAGCAT 27125 37 100.0 35 ..................................... AGCATTAGAGAAATTGTTTTGTTTCTCGCCTTTAA 27053 37 100.0 36 ..................................... AGTCTTGAACTGCTCTCAAAGCACCTTCTGCTGTGG 26980 37 100.0 39 ..................................... TTCAATGTTTTGGAGACTTTGTCTCCATTCATCTCGAGT 26904 37 100.0 35 ..................................... GAGGTGTCTTGATGTAGGCATGAATGTCCTCTGTT 26832 37 100.0 36 ..................................... ATCATAAGCCTCCTCGGCTGAGGCACACTTTATCAT 26759 37 100.0 39 ..................................... ACTTGGTAAGTATGTGAGTTGTTTGGCGATCTTTTCGCC 26683 37 100.0 42 ..................................... TCTCAGAGCTTCCACTGCTTCTTCAGCAGTTTTTGCTCTAAT 26604 37 100.0 39 ..................................... TTTAGCCATTTGATAGCCCTTCGCAACTACATTATAATA 26528 37 100.0 40 ..................................... CCTTTGTTGTTTCTCTCCCTTAATAACGCAGTTGTACCAA 26451 37 100.0 39 ..................................... AGTATCTTCAACATTGATCTCTAGAAGCTCAGCAACTTC 26375 37 97.3 34 ......................T.............. TTAAACAGATTTACACACCACACACTTTTAAGCA 26304 37 100.0 37 ..................................... CTTGTGGTATATAATTGAGAGATCTTTCGATCTTCTC 26230 37 100.0 45 ..................................... CCGTTCATCTCTAAGATGCTGACTTTCATTTGATTCTCCTTTAAG 26148 37 100.0 42 ..................................... CTTGGTTCTGGGATAGTTTCATGGATTTCATCATCGTAATAA 26069 37 100.0 38 ..................................... TGTTTCCTCTGCGTTAGAGAAACGTTGCTGTTTCTCAC 25994 37 100.0 40 ..................................... TCTTTGGCTACTACATTGTAGTAACCTCTGCCCGCAGGCA 25917 37 100.0 41 ..................................... GACACTCATTGTGTGGAAGGTCGTAGGTACTTTTACATAAG 25839 37 100.0 45 ..................................... CCGTTCATCTCTAAGATGCTGACTTTCATTTGATTCTCCTTTAAG 25757 37 100.0 38 ..................................... TGTTTCCTCTGCGTTAGAGAAACGTTGCTGTTTCTCAC 25682 37 100.0 37 ..................................... AAGCTCGATGGTACTTTCACGTAGTATGTTTTTTCAG 25608 37 100.0 36 ..................................... GCCTTGTTATCCAAAGCGTTTATTTGGGTTTCTATC 25535 37 97.3 0 ....................................T | AA,C [25501,25504] ========== ====== ====== ====== ===================================== ============================================= ================== 26 37 99.8 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTATTGGATTTTCGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATATATTTGCGAACTTTTAGTTATGCTTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTGGGCT # Right flank : TTGGTAAAGTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATAGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTGTAGCCACCAAAGCTTTGGCCAACTTTTTGGTGAGCACGAGCAGATGAGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGAGAGAATTATAAAGTGACGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCTCAGACCAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 30745-30409 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYO01000008.1 Campylobacter concisus strain AAUH-49UCpp-a 1108595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 30744 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 30669 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 30592 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 30520 29 100.0 52 ............................. CCTCTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 30439 29 86.2 0 ............C..C.........CG.. | A,A [30414,30416] ========== ====== ====== ====== ============================= ==================================================== ================== 5 29 96.6 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTT # Right flank : CCATACCACATTTGAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTGGGTTTAGACGAGATCTCATATGCTGATTTTAAAAAGAAATTTGACGAAAACGCAGACCATCTCATACGCTCATTATTAAATGGCACTTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTCAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAATAGAGCCAGTAGCTTCATAAATGAAAATTACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTACAAATTTTGCA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //