Array 1 109913-108173 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLS01000010.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N50436 N50436_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109912 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 109851 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 109790 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 109729 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 109668 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 109607 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 109546 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 109485 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 109424 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 109363 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 109302 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 109241 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 109180 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 109119 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 109058 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 108997 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 108936 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 108875 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 108813 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 108751 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 108690 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108629 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108568 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108507 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 108446 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108385 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108324 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 108263 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108202 29 100.0 0 ............................. | A [108175] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128452-126594 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLS01000010.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N50436 N50436_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128451 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 128390 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 128329 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 128268 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 128207 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 128146 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 128085 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 128024 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 127963 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 127902 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 127841 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 127780 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 127719 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 127658 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 127597 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 127536 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 127475 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 127414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 127353 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 127292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 127231 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 127170 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 127109 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 127048 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 126987 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 126926 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 126865 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 126804 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 126743 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 126682 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 126621 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //