Array 1 83435-86711 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRPH01000002.1 Bifidobacterium pseudocatenulatum strain AF36-12AT AF36-12AT.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 83435 36 100.0 37 .................................... GCATACGAGCACGCAGCAGGACAGCTCGGCCACCGCG 83508 36 100.0 35 .................................... TGCTCCTTTTCTTCGGTGGCTTTGAATGCGAATTT 83579 36 100.0 34 .................................... TCATCCTCGAGGACGCGATCATCGGCGACGTGAG 83649 36 100.0 36 .................................... GATCTCAAACTCAACGACTACGAGATCTATGATGAG 83721 36 100.0 35 .................................... AACCCAGTCACGAAGAGCCTCGTTGATGGCGTCCT 83792 36 100.0 36 .................................... TGGCGTACAAGAGTCGGCCAGAGTTGGCGTGACAGG 83864 36 100.0 35 .................................... TCATCCTGTGATAGCCACGGCATCTCCTTCGGACG 83935 36 100.0 37 .................................... CAAACAGGGCGGGTACAATGGCACGGCGCAGGCACTC 84008 36 100.0 35 .................................... GGACGGTGTGCAGGCCATTTTGACGACTGACAAGA 84079 36 100.0 36 .................................... AGACACGTCTAGCCCTAGCGGATTACATTCAATCCG 84151 36 100.0 35 .................................... GCACCGTCAAAGCGATTCTTGATGGAGCCAAATCG 84222 36 100.0 36 .................................... ATGTTGCCGGTACGCGAGTCCCGCTGGAGCTCGACC 84294 36 100.0 36 .................................... TCGACCCGTTTATAGCGCATGTCGTGCATTCGCTCC 84366 36 100.0 36 .................................... TCGTCGAGTGGCTCGTAGGATGCGTCCAGCGGGTCG 84438 36 100.0 35 .................................... TACGACAAATTCCCACAACTCGAATCGGACACCAA 84509 36 100.0 37 .................................... TCGACGAACTGGTGGCATAACGCTTCAAACAGGTCAA 84582 36 100.0 35 .................................... TGAGAATCGGCATGAGTGTGCCGAGAGCGGTGGTG 84653 36 100.0 37 .................................... GACAACGACAAGATACGTGACCTCGTGCGCATGGGCC 84726 36 100.0 36 .................................... AACAACAACGTGAGTACGGCGAACCAACAATTAGCA 84798 36 100.0 37 .................................... CTGGCCAACACCGCCTACACGCGCGCCTACTCCTACG 84871 36 100.0 38 .................................... TCACCAACGAATCATGGAAGCCGCTTATGGGCGTAGTG 84945 36 100.0 34 .................................... AGCGACGGGGAGCTCACGCCACTGGCTGTGACCA 85015 36 100.0 36 .................................... CTGTCCAAGCCGTCTGTGGCACTGGCTCCCATTCTC 85087 36 100.0 36 .................................... ATCCAGCACGCCGATTGGGATGACCCGCTCAAGCTG 85159 36 100.0 35 .................................... GGAGACAATGACCCCGCCGACCTGCGAGACGGATA 85230 36 100.0 36 .................................... TATATACACATTTGACGTCGGACGTCAAGTCGGCGT 85302 36 100.0 35 .................................... GTGCAGGCAATGCTGTACGCGGCCACGATCGCGGA 85373 36 100.0 38 .................................... TTCTTAAGGGTCAGCTTGACGAAAGCCTTCGGCTTGCG 85447 36 100.0 36 .................................... GCATTCGAGCCATACAGGCACGTCGCGTCCATGCCA 85519 36 97.2 39 ......A............................. GCGCAAGCGCAGATCGGCACGCAGTACGCAAGTCAGCAA 85594 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 85667 36 100.0 37 .................................... CGCAACTGATTACGATGTTGCCGACGATTGTTCGGCA 85740 36 100.0 36 .................................... GCTAAGACTGGCGAGGAAGTCGTGGAAGACTGCAAG 85812 36 100.0 36 .................................... GGTTTGAGCGCCGAACTCCTGCCGGAAGACGAAACA 85884 36 97.2 36 ...................................G CTGGTCTGCACGAAGGAACTGTGCGACGAGATCGTA 85956 36 97.2 36 ...................................G AGGTGGCCTGAGCGGTAACCTTCAACACTTCGGCGG 86028 36 97.2 36 ...................................G CGCAAACACCGCGCGCGTCTATAACAAGCAGACCGG 86100 36 100.0 35 .................................... ATTCCAGCGCGCAGGAGGCGCCTCGGCTCATTACG 86171 36 100.0 35 .................................... GGGTTCATTCGCCGCCGAACAGCTTCTTCGCGATG 86242 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 86315 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 86387 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG 86459 36 100.0 37 .................................... GGGGACAATGACCCCGCTGATTTGAGGGACGGGTATA 86532 36 100.0 36 .................................... GAGAGATAATAGTTGGCGAGCCACTGGCTCAGATAG 86604 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 86676 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================= ================== 46 36 99.6 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : TGATTGTCATGAGCGTGACTGTTGATGAAGGTCATCAGGGTGAAAAGTCGGAGTGGAAACCTTAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTTACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTGCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : GTCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCGCGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATTGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //