Array 1 14830-13485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000001.1 Nostoc linckia FACHB-391 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 14829 37 100.0 34 ..................................... TTGGCAATCATAACTTTCTGTGCAATAATTGGTT 14758 37 100.0 37 ..................................... AGTGATTTCCAATTTCTAGCATTAATAAAAACTCCAA 14684 37 100.0 35 ..................................... CCACTACTCCAAAATGCATCCTTGGTACTTACTTT 14612 37 100.0 35 ..................................... GCGCTCAATTTGCCTTAGTCGCTTCTGGCAACCAC 14540 37 100.0 34 ..................................... CCCAAGTTCGTGATTGAAAACAAATGGAAGTTTG 14469 37 100.0 38 ..................................... TTAGTAGCGGATTAATTAAAAGCTGGCAGTTGGATACA 14394 37 100.0 35 ..................................... GAATATAAGAACTCTAAAGATATTAGTCTTTTTGA 14322 37 100.0 40 ..................................... CCATAGGGCAAATCGCATAAAATCATATCTATTGATTCAT 14245 37 100.0 34 ..................................... TGATTTTCACTATTTTTAGGCGTTAGTTTTTTTC 14174 37 100.0 36 ..................................... ACTTGAAGATGTCGGTCGGCTATCAGGCTCCAAATA 14101 37 100.0 34 ..................................... ACAGAGTACAGGCAAATTCACTGCCAATACACAA 14030 37 100.0 34 ..................................... TGAAGCGCAAGAAAGAGGATTATCAAAAGAAGAA 13959 37 100.0 35 ..................................... GGAGCAGTAGAAACGTAAACAAAGACATCAGAGGG 13887 37 100.0 38 ..................................... GCACGATCCGCGCTACTTTACCAAAGAGGAGGCACGAG 13812 37 100.0 34 ..................................... ATCCTACGGTGTCATCCCTCCCAGTAGGGTATGT 13741 37 100.0 34 ..................................... ACGTCTTCGGTAGACCAACCAGCCATGTATACAG 13670 37 100.0 36 ..................................... TCTTTCCCTGGAGAGACGCCACTTTACTACACAGCA 13597 37 100.0 39 ..................................... AGACGGAAAGATAACTTATAACTTCCTACTTGACCCTGA 13521 37 89.2 0 .................................TTGT | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.4 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCTAACATGCCAGGAGCAGTACCTTGGACAGCAACCCAGGCACTTAACAACAGTACATTACCTTATGTCATCCAATTAGCGAATTTGGGAATTAAGGCACTGGAAGTTAACCCAGCATTAGCTAAGGGTGTGAATGTGCAGAATCATCACTTAGTGCATCCTGCCGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTGTGCAAGTATTAAGCGATCGCTTATTTTAATAGAGCTAGTTCTCAAGAATCAGACTAATTTTCTTACCAAATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGGGCAAAAAAAGGCTGGACGCTCCATCTATACAAGACTTTCAGAGCAATTGTACTTTTAAACCATCCGCGCACCTTATAGGGACTGGTTTTCAGCGATTTGCATCTGGTGCTATGACTATTCCCTATGTTATGATTCAGTGGTTCGCGCAACTGCACCTTGAAAACCAAATACAGCAGCACTTTCAGACACCAGCG # Right flank : GAAAATGAGGAAAAGCAGCTTTAAGGCTGACATGAATCGGCCATAGCAGCCCTAAATCATAGCTCCCCAACTTATTGGAGAAGTCGGAGAGATGTACATTAGTGTCACCTTATGTTTTTTATGCCAACTTTGACCTCTTGTCTTTTGACATATATTACTAATTCACTCACAATTTAGAAAACTTTCCCTATCTATAGAGAGATGCTTTCCTCTCTAATAAAGTTTAATAAAGAGAAAATCTACGAAATTAGTCTTTCCATTTGACTATGATAATGAAGTTTTTGGAAACTGCGATCGCTAGAATATTATTCACGAAATGTCAATAATTAATATTCAATATTGAATAAAGAAAATTGGATGGCATTAGAATCTCCATCTAAAGATTTTGGGCTGTTGAATTTGAACTCAGACAAACAAATAAGAGTGAGTTTCAATAGAGGAATACAGGCATGGAATTTTTATCCAATTCAGTTGTGCTATCACGGATGCAATTTGCACTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 28857-28319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000026.1 Nostoc linckia FACHB-391 contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 28856 37 100.0 34 ..................................... TTGCTGCTGGCAACGTTGAAATTCAAAATGCGAT 28785 37 100.0 34 ..................................... CGGGCAATTCTTGAAGATAGGAAGGGTGAAACTC 28714 37 100.0 34 ..................................... ACTATGCGACCACAATGCAGAGAAGGGAGATGGA 28643 37 100.0 35 ..................................... AAGAAGTACCAAACTACTCAACTGAAATTGCCGCA 28571 37 100.0 33 ..................................... CCAGTCTTTGGGATATAAACTTTTGTCCATCGG 28501 37 100.0 32 ..................................... TCGATTTCATCAGATGATGGTGCAAGTGTTGG 28432 37 100.0 40 ..................................... AAATCAGCTTGCTGCCTTGAGATGACGAGTCTTGCTGAAA 28355 37 94.6 0 ............................A.A...... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.3 35 GTGACAACAACCCTCCTAATACAGGGTGGGTTGAAAG # Left flank : AGCAAAGGAATTGGCACTTTCTGCATACCATGAGCGCCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGATAATAAAATAATCAATAGCGCCGCAGTTTATGCTGCTTGCAGCCTCTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATATAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTCGGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTTAATCACCTCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAAAGTTCCGCGCAAGTTCCAAATACCTTGCCCCGTCTGAATTTATCGTTTTTCCATCGAGATATGATTCTTGTAACTGAGGCTCAAATAGGAAATTGGGAGACATACGCGCTGAGGAAATCTAGAAACGTCGCCCCACAATATTTTGAAACTAGGTGG # Right flank : TGCTTATGTATCGTGTGCTAGAAATTAGCATTTACCTGTAAAAACCAGTCTCATTATAATAATTTTGTGGTTTTAGTTTTGTAAAAGTCTTAAAAAATGAGAGGGTTGAAAGAAGCTCCTTACACCACATTCCAAGCTTTCTTAAACAAGCTTGTTAGGGTAAATAAGGTTATATTAGCCTTATAGAGTTGTAAGATGCTCAATAAGCTCAGTTTTTGTAAATGACACTAATTTGTCATTGGCAGTCTCAAAATACAAATTTGAGCTTAAACAACAACAATTTGTCATCATGACAACAATTTGTCGCCGATGACAAATAATTAGTCACTGTACACTTTAAAAGGGAAAAACCGCAAAACATGATGTTTTACGGCTTTCAGTGTGGTGTGAGGAGTTTAACTATATATCATGATAAATTAGCTACCCAACAACAACACACTCGTAACAATTTTGGTAACAGAGTTTTTTTCCGATGATCGCAAAGCTTGTCATCGTAACAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAACAACCCTCCTAATACAGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 34870-36218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000027.1 Nostoc linckia FACHB-391 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 34870 37 100.0 36 ..................................... AGCAATTTCATTACTAATCACATCGCTCAAAATTAC 34943 37 100.0 38 ..................................... AGTTTGGCTCTGGAAAGTCTCTCTATCAATTAGAGCTT 35018 37 100.0 38 ..................................... ACCAATTTCATTACTAATCACATCGCTCAAAACTACAA 35093 37 100.0 35 ..................................... ACCTACCCCACTGCCACAATCATGAGTGGCAACTT 35165 37 100.0 37 ..................................... ACTTCACTACCTACGGGAGAAGAAGCGACTGTAATAA 35239 37 97.3 31 ....................................T GCAAAATTAGCTCTGGATGCTTAAATTGTTA 35307 37 100.0 34 ..................................... TTCAACTCTGGCTTTTCATCTTTATAATTATTCA 35378 37 100.0 38 ..................................... AGCATCGATGCAGAGCAATCCCTCCCAAGTTCCACCGG 35453 37 100.0 39 ..................................... GTACTATTCTCGATGCTGCGGGTGCTCTTGAGAAAGAGG 35529 37 100.0 35 ..................................... AAATTATGCTTATTGCTGAGATGGGGGCGGGTAAA 35601 37 100.0 37 ..................................... GAAAAGTTCAAAGCACTCTAAATATACTGATTGAAGA 35675 37 100.0 34 ..................................... AGTTTCCCGCTCAAAGCTTGAGGAAGAAATACGG 35746 37 100.0 35 ..................................... ACAAAGCCCAAAGGATAAAGTAGGTACCGAGGATG 35818 37 100.0 35 ..................................... GTAGGGGAATACTCACACCGAAATCTAATCGCCAC 35890 37 100.0 35 ..................................... GGGTTGCAGTGCAAGAGCTAAGGCTTTATTGGTGG 35962 37 100.0 35 ..................................... ATCACTTTTAATTCCCCTGGCATTGATAGTCAAAG 36034 37 100.0 34 ..................................... AAAACCCTGAAAGCGTCATCTTGATTTTGAATCA 36105 37 100.0 40 ..................................... GGGAGATTTTGATAATTTAGAATACGCTTGGTGGCTGCAA 36182 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.9 36 ATTGCAATTCATTAAAATCCCTATTAGGGATTGAAAC # Left flank : TAGGATTGCGAGTCAAGTCATCCTTTGGGCTGATTCGAGGTGACTTAGGAATTAGCGACCAAGGAGAAGTTAGATTTGAAGTTACTACAGGTCAGCGATTTTAACTTTTTCTAAATAAATACACTTCGCTTCAAACTTAGATTAATTGCTTCTGGAAGTAGATGCTTCCAAGATAAGAATGAAGCGATCGCCCATTTTGGTACTATTGAGCAAGTTGCATCGGGCGTTGTCATTCTCAACCTAAACAATGCGCGGAAGGGTAGGTGTACAAATTTCACAGCGCCAAAAAAGTGCTTCTATCCCAACTCCAGTAAGGCTTTTAAACCATTATCTGCCGAATCCTCATCCGCGCAACCTTTGAAATGCTTATCAATATACAATTTCAGCCTTTAAACTTTCCTAATGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGCTTTCCGGCCCCCGCC # Right flank : CTGACACTAATACCATTTCACTTTAATAATAATGATACAAATACACTGGTAAGGGCATGGCAATGCCATGCCCCTACGATAAATCTATATGTATCAGGATTTTTGTGAATTGATATAAGTCTTTGGCGGATTCTGCAAGCAAGGCTATTGCGGATTTTGCCCCTTGTCTGGCTAAAAGGAAAATAGCAAGAGAGTGTCAATTGCTCAGTCTTAGGAACGATTTTGAGGGAACAGATAGGCGATCGCAGCATAACCCGAAACACTAAGAAAACTAACCAAAAAAGCAGCCAGAAGAAAAGTAGACATAATATTACACTTATGCATTTCCAAAATCTCGGCATCCATCAAAAAACCTAGATTTCGGATACTTTCAAATTAGCAATTGGGTATGACACAGCCGTGGCTACCTTGTGTCAATCCCTTGTATCTCATATCATGTCCGCTTAATTAGTTATTATTCAGGGCATCTATGCAAAAATCTTAAAACTCTCTTTCCCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 9671-11792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000037.1 Nostoc linckia FACHB-391 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 9671 37 100.0 34 ..................................... AAATCTTTACAATTCTGAGAATCTTCAAGTATTT 9742 37 100.0 34 ..................................... AAATTAAAATCAGCAAATAGCTTTAAATCCAGTC 9813 37 100.0 32 ..................................... TGATTAGTATCATTTAGATAATTAGCAGCAAG 9882 37 100.0 33 ..................................... AGCAGTTGTAGCTGTGCTTTGTGCCCTGTTTGC 9952 37 100.0 36 ..................................... CATTTCACTTGCTCCGGCGGCCGATGGGAGTGGTGG 10025 37 100.0 36 ..................................... GAGTTGCTTTTTCAAGTTGGCTTTTTTCATTGTCAC 10098 37 100.0 37 ..................................... AAAAAAGACGATTTAGGTTGGTACAATCAATTGCGAC 10172 37 100.0 33 ..................................... GTAAATCTTGGGAGGAATGGGACGCGCTGCTAA 10242 37 100.0 36 ..................................... AGCTGAATCTGGAGCCATGCCTTTTACCCATCGACT 10315 37 100.0 33 ..................................... CTAAAGCGGCGATATCAGATGAAGATACCCCCG 10385 37 100.0 34 ..................................... TGATCTCTTGGAAATCATGACTAGATAAAAAAAC 10456 37 100.0 31 ..................................... GATTTCTTCCTGAGTCATAATTCCTATTTTG 10524 37 100.0 38 ..................................... CCAACATTTGCTTCTAGCTTGCTGATCGCAGATGCAAA 10599 37 100.0 35 ..................................... ACCGACGCATTATATGGTTTTGTAGCCAGCACGAG 10671 37 100.0 35 ..................................... ATTTCGCTTGCTCCTGCCACTGAGGGAAGCGGCGG 10743 37 100.0 49 ..................................... TTAATGGAAGTTAAAAAATGTAGTTGAAGAAATGGCAGAGGAAAGTTAC 10829 37 100.0 32 ..................................... TTAATGGAAGTGCTGCCTTCAACACCTCCCGA 10898 37 100.0 32 ..................................... GGACTTTTCTAACATGGCGCGGAGCCTCCAAA 10967 37 100.0 33 ..................................... GATTGTCCTAGTTTGTGATTTGTTCCTAAAAAA 11037 37 100.0 33 ..................................... TTTTGGCATACTTTGACCGCATCAACAGACGTT 11107 37 100.0 36 ..................................... CAACGGATGTGCAATGCACACTTTTTGCGTATGCAA 11180 37 100.0 34 ..................................... ACTTTACCAAGGGTTTAAAGCACTAAAGGGATTA 11251 37 100.0 36 ..................................... GATAAAGAAATGTACGAGTATCTACAATCACGGGCT 11324 37 100.0 37 ..................................... CAGGAATCTCCCCGTCAACTTCAGGAGTAGGAGTAGG 11398 37 100.0 35 ..................................... GTTCATCTGGTAGCTGCACTGATTCACCTAAAATA 11470 37 100.0 34 ..................................... CAGAGCAATCATTGCGATCGCAGCAAACTGGGGT 11541 37 100.0 34 ..................................... AAACCAGATAGAAGCATCGATGACCAAAGAATAG 11612 37 100.0 34 ..................................... AGCTTATGTAGTTTGGAACCCTGAGAAACAGGAA 11683 37 100.0 36 ..................................... CGACTTAATATTACTGGTGGTGCTAATAGTATCAAG 11756 37 78.4 0 ............................CCC.AGCTA | ========== ====== ====== ====== ===================================== ================================================= ================== 30 37 99.3 35 GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Left flank : GCACTGGTGATAATGATTAAGAAATTGCTGGTTAAGTTTCCGCAGTGGAAGATTGCGATTGTGGATGGGATGCTGGTGAAATGGGATGAGTAGCGATGCCTACGGCAACCCTTTCAGGAAAAGCCCTTTAATCACTAGGGACTTCTAGTACAGTAATCGATTTTGAGAGTAGCGTAACTTCGGAATCAGAAGCTATATCTATTTTTATATTATTATGATATGAAAAGTTAATTGGCTCACTGGTGAACACAACAAGATTATTTCCCTTGCGGAATGCGCGGGTAGGTAGGTGTTCAAAACCAAAAATGGGAATAGGGGTTTCAAATGTGCTTAGTGCAAGAGTTTTAGCCAAAATAGTTACTTAAGCACCCGCGCACCTTACACAGACTGGGTTTTAGCTATTCCCTTACTATTCAATCTAAATTCTCCATGCTATGATTAACCTATCCGCGCATCGGAACCTTGAAAACCTAATAAATACAGCTTTTTGGGCTTTTGAC # Right flank : ATCTAATTGGTATACAAAGCAGGTAAGCTGAGGAAAGCACCTAGCAGCAGTAAAAAATTAGTGATAGTAAAGTTGCCTCGCCATCGCCCAGAACGAAAATTCAGTAATATCAAACGAATAGTATTAGAATGTTCACTCATCGAGTGCGTGCATTGTGGGGCAGAATTAGCGCTACGCAGACCAAGACACATGCGTAAAACGATTCAAACAATGGATGGTGTAGTATTTGTGGCAGGCAAGAGTAAAGAATGTACCAATTCCAGTTGTACACATTTTGGTAAACATTACTATGCTACTGGCGTATTAAAATACAGCTTACCTTACAGTACATACGGGCTAGACGTGCTGGCATTTATAGGTTGGCAGCATGAACATGAGCATCAACAGTTGGCAGAAATTCGACGCTTATTAAACCACCGTGGTGTTGAAATTAACGAAAGCAATGTAGGTAAGCTATATCGTCAATTTCTGGCACTATTGGGTGGAACGATGGCACATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 13601-16397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000037.1 Nostoc linckia FACHB-391 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================= ================== 13601 37 78.4 35 AA.......AT..C..GGG.................. ACCACTCCGATAGTACGTAAATCACTTAGCTAGTG C,AG [13603,13609] 13676 37 100.0 34 ..................................... TACTGATATGAAAGGTTTTCCCCCGTTTCTAATA 13747 37 100.0 35 ..................................... TTGTAGCTTTTGTATCGTCTCCTCCCACGGTGGAA 13819 37 100.0 31 ..................................... TAGTGATTCACGAGGTGGGAACCACTTAGAG 13887 37 100.0 36 ..................................... TAATGTGTCTCTGCTAATTCCTAATCTCTCCCTAGC 13960 37 100.0 35 ..................................... ACAAACATACTAAGAATTCCAAACAGAGTAGTCAT 14032 37 100.0 45 ..................................... ATGATAAATTAGCAAAAGAGAACAATCAGGATTCAACCATGTACG 14114 37 100.0 33 ..................................... ATGATAAATTAGCTCCTTTCATGGCTGAAACAT 14184 37 100.0 37 ..................................... AGTGATTTTGCATCCCTTGTTTCTAGATGCAGTTCGG 14258 37 100.0 32 ..................................... AGCCCATCTATTGCCGGGCCTGACATGCGGGA 14327 37 100.0 35 ..................................... CACCGTTTCCGGTTCTGCGCTTTTGAGAGGTTTCG 14399 37 100.0 33 ..................................... CTATACTGGCAATCGGGGGCGATCGCTAATTGA 14469 37 100.0 32 ..................................... GATAGCTCCGTATTTAGCAGCTTCAAGTCCAA 14538 37 100.0 36 ..................................... GAGATTTATCAGAATAAGCAGAGCAAAGCTCAGTAC 14611 37 100.0 34 ..................................... GTAATGGTAAGCGTATCTCGCATATAAGCGAGGC 14682 37 100.0 33 ..................................... GCATTCTTTAGTAGCTACCATACTGCACCCCTG 14752 37 100.0 37 ..................................... ACAAGCCTAATGTACACCTTTTGTGTTGTGGTTGCAT 14826 37 100.0 34 ..................................... AGAAGAGTCGCTGTTTTTTGCTTGCGCTAAACCT 14897 37 100.0 35 ..................................... AATTGGTGGAAGTTTCGGAAATAGAAAGTTTCAAA 14969 37 100.0 34 ..................................... TTAAAAAATGTAGTTGAAGAAATGGCAGAGGAAA 15040 37 100.0 34 ..................................... AGCCTGTTGAGGCGGCTAGCCTGTTACGCTCTAA 15111 37 100.0 40 ..................................... GAGAAGCCCCAACTATTTAATATCGAGTGGGTAAGCGATA 15188 37 100.0 35 ..................................... ACTATTATCGTGTGCTGGATTTTTGAGTTGCGGAC 15260 37 100.0 35 ..................................... ATATTGGACAGCGATCGCCCTTCTCTATCTGCAAG 15332 37 100.0 34 ..................................... AGGAAGTTACCAGAGACTACTTTATCCCATACCA 15403 37 100.0 35 ..................................... ATCCAACAAATATTTCACCCCATCTGGATTAAATC 15475 37 100.0 33 ..................................... CATTATGTACTACTTGTAAGCTACACCTTGAAG 15545 37 100.0 35 ..................................... AAACCAGGAAATTCTACAATGCTTTTACCTGCTAA 15617 37 100.0 35 ..................................... ATTCTTTCTTTCAAATCTTAGGATTCGTAACCAAA 15689 37 100.0 35 ..................................... AGAACGACCGCATGAGTTGTAGAGTGTGCGGTAAG 15761 37 100.0 35 ..................................... ATCGATGGTTTGAAGATGATCGGTAACAACGACAA 15833 37 100.0 34 ..................................... AACTTTACCCTAGACTATTCTGATCGCTATTCCA 15904 37 100.0 34 ..................................... AAAAGCTTGCACTGGTAGCAATTAGCCAGATGGC 15975 37 100.0 34 ..................................... GCAGACTGCCCAGCCGATCGCCCTACATTACTAA 16046 37 100.0 35 ..................................... CTTGCCCTTGATTCTCAGTATCCAGTGATCAATAC 16118 37 100.0 37 ..................................... TTGCAGCTTGCCGAAAGTGCATTTACACTACTGCATG 16192 37 100.0 34 ..................................... TTTGTGAATACTTCAATGGCAGGTTAAACCCTGC 16263 37 100.0 61 ..................................... AGGCGGACTGGTGTAGTCCCTGTGGCGGACACCACGTTACAATTTCAGTTACTGCATTGAA 16361 37 81.1 0 ............C.C.T..GT...C.......A.... | ========== ====== ====== ====== ===================================== ============================================================= ================== 39 37 99.0 36 GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Left flank : TACTAGCAACTTATCTTTGACAAGCCTTAAAGTTCGATGCGAGATGGAAGAATTATTACAGCAGTTTGTACCTGACCCTAAACAAAATCCGGCACAGTTTGCTCTACTGAAAAAGTTACAACGACTATGGGATAAATACGGTACTAACTTATTGCACTGCTATGATATCCCTGGCTTGCCGCCAGATAACCTGAAAATGGAAGCTATGTTCAGCAATTTACGTCGTCATCAAAGGCGGATTAGTGGGCGCAAATCAACTGCCGAATTACGTGATTTTGGGCAATATCAAGTTCTATTCCTAGCCGAAAGTGAAGAAATGTTACTGGCACAAATTCGGGAAGTACCTGTAGCAGAATACAACACTCAACGTCGCAGATTAGCAATGGGTGAAGCACCCCGTCAACAAAAACATCGCCTTCATCGTCATTCAGTTCGCACAATACAAGCTTTGGTCGATCAACATACGGAACTTCTTACTGTGCTTGAGTCTCAAGCTCTTG # Right flank : CATAATGTAGAAGTTTAACTCTTGGTATTGACATCATACAACTGGCATAAGGTAAAGAGTTTTTGTTTTAAGCGATCGCGTAGACTCTCAGGAGACACAATCACGCAATCCTCCCAGTAGCGTGCAACTTCTCGAATCAGCCAAAAGTCGTTGACAACACGTCGCACCACTTGGCGTACATCCCCAATTGTTTCGTCCTCTAAGTCATCTTCCCTGCGTTGATAGGACTTTACCATCCAGCCTCGAAAGTGTAAATACACTTTTATGTGATCCAGCCCATCTCGCCATTCACCGCTTGCAGGTACAATTGAGCGGATTTTATCAAAAATTAAATTGCGGTTGTGCCAAAGTTCTGGCAAATCAGGAATCAAATTTTCTACATCCTCGGTTTCTTCACACCAAATCATTAAATAAAAGCGTTTATCAAAGAAGCGTGGTTCTGCATAACGTACCGTGTACTGTAGTTCTTGCCCTTGAGAATTTTCATAAAGCAGGTAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCAGTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 27698-27876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000037.1 Nostoc linckia FACHB-391 contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 27698 37 100.0 34 ..................................... TAAAATCTGGCACTGTCTCTACTAATGAATCTAA 27769 37 100.0 34 ..................................... CTGTTCTTGCATTCCTGCCTGGGTTCAATTCTTG 27840 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Left flank : AGAAGTAGCGATGAATGTGATTGTATCCTATGATATTTCTGAAGATAAACGCCGCACCAAAATTCACAAAATCCTCAAGTCCTATGGACAGTGGGTACAGTATAGTGTGTTTGAATGCTATCTGACTGATACTCAATATGCAAGGTTGCGATCACGCTTGAACAAGTTAATCAAGCCTGAAAGCGATAGTATACTCTTTTACTCTTTATGTGCTTGCTGTGTAGGTAAAGTTGAACGTATTGGCGGAGAAAAAATTCGTGATGACACTGTTTTCTTTGCTGAATGCGCGGATGGGTAGATGTTGAAAACAAGATTGGTGAAAGGGTGCTTCCAGTTCAACTGGTACAAGAGTTTTTGCGAAAATAGCTGTTCAAATATCCGCGCACCTTATACAGACTCTATTTCGCTTAAGATTAACGTTAATTTTCTATGTTATGATTATCTCATCTGCGCTATTGGACCTTGAAAACCAAATACAGACTACATTTTAAGCAGTCTCA # Right flank : CTCAATGTTAAAGTTGATAGTGGCAGATTCTGGGAGATTAATAATGGCGACAACTAAATATCGAGCTTATACAAACGTGCCAAAGCCAAGTCCAAAACTGGTAGAAATAATAAAGCAATCTGGGACGACTTTATATTTAGATCCGGGGGCAATAGTTCAACTGATAGATCCAGATACATCAGTACTACAAATAATTGTAGGTAGACAAGAAAGTATATTTAAATTGACGGATATTCGTGCCATTATCGCAACAGAAGCAGAAATTAAATCATCAGCGCTAACAAAAATTCTGCGATGGCGTATTCCAGTAATTTTATTTTCTCAATCTGGCGAATTCTTGGGAAGGATTGAACCAGATTACAAAATCAGGGCAGATATCATGCAGTCCCAAGCTCTGATGACTGACGCGATGAGAGTTGAGGTTATGCAAGGTGCAACCTGGGGTCGTCTCCGTCGCCTCCGGCGGTTTTTACAACGCTCTGGACGTGATGGTGCTGTAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 6702-7100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000054.1 Nostoc linckia FACHB-391 contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6702 37 100.0 39 ..................................... AAGTTTCATTAATAAAGCTGAATTTCTCGCATACTCCGA 6778 37 100.0 36 ..................................... GACTACTGATACCTAACTATTTCTAAAATGACCAAA 6851 37 100.0 34 ..................................... CAGATGTGGACAATCGGCGAAAAGCAAAGCTTAG 6922 37 100.0 32 ..................................... GCTGAGTAGCACGACTGTATCTTATGCAAAAA 6991 37 97.3 36 ..................A.................. GGGTAGCCGCTTTTTCAGCCCGAATTGCTTTATTAA 7064 37 94.6 0 ........................A...........A | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.6 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : TTAGCGATCGCGGCTTATCATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGATAATAAAATAAGAAAATTCAACAGCGCCGCAGTTCATGCTTGTTATAAGCCTCTGTGCTGTGTAAATTTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTTATTTTTTGGCATGGTAAAGCGGGGGCGATTTCCCTGGGACTCCTGCCAAAACTTTAAATCACTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGAAGGGCGGTTTTGGGAGACGTGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGGGTTTGAAGCGCAGA # Right flank : AAATATATACCATCTTGTTCTTAAATTAGCTCTTTCTCGGTATTAGCATTACTTTAAAAGCTTTATCGACTTTTTGTGACTGGTTCTCAATTTCGATAACAAGCTGACAAGTTTTTAGGTGGGTTGAAAGGATAGAGCAACAGATTCTTTGTTTGGAGGGAATGACCTCTGGCTCTATTAGTGAATAATTAATCCGGTTATAAGTTAGATGCACAAGGATAATACTGCCATACTTATAAATATATAGCAGTATATGAATGTGACAGCTAATATGTTAACAGTGACATCAATCTGTTAACAGTGACAAATAATTAGTTAATGTACAGGTAACGAGCGCGGAGGGATTTGAACCCCCGACCCACAGAACCGGAATCTGTTGCTCTATCCACTGAGCTACGCGCCCTTAGTCTTACACATTATAGCACGTCTGTGATAAAATTTGCAGCCTAGAAAAACTTGGTTTTTGGGTTAAAGATAATTAGCTGGGTCTACGGGTGTAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 61317-63333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000009.1 Nostoc linckia FACHB-391 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 61317 37 100.0 34 ..................................... CTCGCGCGGCTTGTTGCTGTGCTTGTTCCCTGAA 61388 37 100.0 33 ..................................... ATAAGTCGGTAACAAGCTACTCTGCAAAGAAAG 61458 37 100.0 34 ..................................... AAAAGCGGCTAACTTTTTAACTTCTACATAATTC 61529 37 100.0 35 ..................................... CATTAATTTTAGTATTAACAACGAAGATATTAAAT 61601 37 100.0 35 ..................................... AAATGTGCGTACTTTACCCCCACGGATTACCTTAG 61673 37 100.0 36 ..................................... AACTAAACCCCGGTGTAAACTATCCAGCGCATATTG 61746 37 100.0 36 ..................................... TACCCAAAGAGTCAACTAAGGTTAGAATAGTAGATA 61819 37 100.0 35 ..................................... ATAGTGATCGCTTGGATAACTTACACTCTGAGTTT 61891 37 100.0 39 ..................................... AATGCTAATCCTTGGGCGTACCGTGGTAGGTGCTTCTGA 61967 37 100.0 35 ..................................... TAATCGGATCATTTGCCCGGCAGCCCCCTGATAAC 62039 37 100.0 34 ..................................... TACCAACTTCAAAGGGCACAACATAAAGGATATT 62110 37 100.0 34 ..................................... GGTGAAGCGATTAAGAATACTTTGATGTATCCCA 62181 37 100.0 36 ..................................... CACCATTAGGGTCAACCTCAGTACGGAACACATAAA 62254 37 100.0 38 ..................................... TTTCTGCACAGTCTAGAGAACAAACACAGCATTCTGAA 62329 37 100.0 35 ..................................... TTACACTGGTGAAGCCTGTAACTACTTATTTTATC 62401 37 100.0 36 ..................................... AAAGCCGCGATCGCTGCTGAAAACGCCCTGAGAAAA 62474 37 100.0 35 ..................................... TAGTGATTCACGAGGTGGCAACCACCTTGAGACTG 62546 37 100.0 35 ..................................... ATCCAAAGGGCGGTGCTTAAGTTCGCAGTAGAACG 62618 37 100.0 35 ..................................... TATCTTAGTAATGACAAAGTGAGATACGTTCTAGA 62690 37 100.0 37 ..................................... ATTTTAGAATCTTTGGAATTTACTCCAGTACCCGTAA 62764 37 100.0 45 ..................................... AATGCAGAGAGATTGCCACAAGCGACAGCCAGAAGCATTAGACCA 62846 37 100.0 37 ..................................... AATGCAGAGAGAAGGGGCTAGTTTAGAAGAAATAATC 62920 37 100.0 45 ..................................... AGGATTGCAGCACTAAGTGTGGTGAGTGGTGGTGACATTACTTGT 63002 37 100.0 43 ..................................... AGGATTGCAGCTTATCTGGCACTAGTTCATTAGGATGCGGCGA 63082 37 100.0 37 ..................................... AGTTTGGCTCAAAGCAATAATGCAGCGCTTGGGCTTG 63156 37 100.0 34 ..................................... CTCCATTAGCTTGTCCGTTAGATGATGATTTAAG 63227 37 100.0 33 ..................................... GTAGCAGGCTCAGTGCTATCGAGAGTACAACTT 63297 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 28 37 100.0 36 ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Left flank : ATGTTTTCTCTGCTGTTCATAGAATTAACAGACCTCATACGCAATTCTTCGCTGGAAAGGGGAACGAAAGAAGTTCTGATTAAAACAGCTTTTAGGGAGTTTGCTTGTGCAATAACAGACTTTGAAGACGTTACCAAATAAAGTTGGTTATGGCGGTGCTGATATTGCTTAGGCGTAACCCAACCCAGGCATCGCCCTGAAGTCAGCTAACCTAATCGAGTAGGATATCTATTAAGTAAGCAGCTTTCCAATCAGATTAGTTTTTTCGCTGAATGCGCGGATTGGTAGGTGTTGGGGAAGGGGTGACTAAAAAAATGGCTGAATTACCTTATATACAAGAACTTGAGAGCGTTAGCATTTCTAAACCATTCGCGCACCTTATGGGGACTTGTTTTCAGCCATTTGCCTCTAGCCAACTCACAACTCCTCATGTTATGATTTCTGCATTCGCGCAACCGAACCTTGAAAACCAAATAAAGCAAGACTTTCAGAAGCCAGCT # Right flank : CCCGGTGTAATGTCTGGCACATCCTTCTTAAGCTGACAAAATGTTTGGTATGATTAAGAAGTGTAAAGTTATGTTACACTCAGTTACGAGTCAGGAGTCGAGCGCAACCGACATCTGAACAACAGGCCAATTTATCAAACATTCCCATAGAACTCAGAAAATGACTCTATCGATTCGTCCCGATCTAACTTCTGCCGATCAGGTACTGTCATCTTTAGCGACTGGGCAACAGCAAACTGTAACAGAAGCTCAAATGATGCAGGCTGTGCGTACTTTGCTGATTGGATTAGGAGAAGATCCAGACCGCGAAGGACTAAAAGATACTCCGAAAAGGGTGATGAAAGCCTTACAGTTTCTCACAAAAGGGTATCATGAATCATTGGATGAACTGCTAAACGGAGCAGTATTTACAGAAAATGCCAATGAAATGGTATTAGTACGGGACATCGATATTTTCAGTTCCTGCGAACATCATATTCTGCCAATTATTGGTCGTGCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 2369-2766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000019.1 Nostoc linckia FACHB-391 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 2369 38 100.0 34 ...................................... ACAGCTAATTTGCGCTTGGTGGTCGCAATCGCTA 2441 38 100.0 35 ...................................... GTTCTATCTCATCAAATGGATTATCTAGAAACTGG 2514 38 97.4 34 T..................................... AATGCATCTTTAGATTTAGGGATTTGACGATAGT 2586 38 100.0 35 ...................................... TTGCCATTGCGCTAGTAAATTGGGCATTATTCAGG 2659 38 100.0 32 ...................................... ACGGCTATTCTTGGCTGTATAGTAGTCATTTT 2729 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 6 38 99.6 34 AGTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : AGCCGCTTAAATTTAATTCACTAATCCGAACCTAAAAAATATAATATTTTTATAACAGCGCCGCAGTTCATGCTTTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTCATAATGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCAAATATTTTTTTGGCGTGTCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAACTTTAAAACCCTTATCCAGTCTTGACTTAACAAACTAGTATGTCAATGCATTTAGTTTTTTAATTTGCAATTCGAGACTTTTTAAGCAGACCTGCCAAATTATGTGTATGGAAAGCTTTTATAGCAAGGGTTCTAGACGGGTAG # Right flank : GGCTTAAGTTGAAAAAATAAGCAATAAAAACTATGTACTCGCATTAACCAGATTTTAAAATGGTTAAAGAGTATAACTAAGTTATTAGGAGGGTTGAAAGGAGCGCTGCGATCGTACAACAGTTGAAGCAGTAAGTTAAGCAGCGCAAAATTGTAATGACAAATAATTTGTCGATATAGAAATTTTGACAAATATTGTGTCGCCACGGACAAATAATTTGTCGCTCTACAGGACAAATGGAGAATAACGGATTTGAACCGATGGCCTCTGCGGTGCGATCGCAGCGCTCTACCAACTGAGCTAATTCCCCAAAATCTGTGCTAAGTCAAGAGTAATATCACTCATTAACTTAATACACTATCACCATAGAGTATTCTAACATTCAGTTACCGATGGTTGAGGCTGTTTTTGAGAATAAACCTTCTGAACCCGTTCGAGTTCCAAATCACTCAAATAATCAACAGTCCAGTTACAGCAGCGCTGGAGCATATGGAATGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3326-4003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000107.1 Nostoc linckia FACHB-391 contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3326 37 100.0 34 ..................................... TTTTTAACCACTGGCAATGGCTTTTCTAGGATGG 3397 37 100.0 34 ..................................... TAGCAAGTTGCTGGGGCCGACTGACAGGGGAATA 3468 37 100.0 34 ..................................... AAATGTACATGACCGACCGTTACCGTGCTGGGTT 3539 37 100.0 34 ..................................... TGGGAGAGATGCCAAGTAGCCCCCCCCAGCTTCG 3610 37 100.0 36 ..................................... CTACCTTGAGCGAGACTTTTAGAATAACGACTACAA 3683 37 100.0 33 ..................................... AAAAATGTGCCAGCAAGCACATCATAATATTTT 3753 37 100.0 35 ..................................... TAATCAGGCAGTCAATTGGAGACAAACTGTAGATG 3825 37 100.0 33 ..................................... TTTCAATACCTGTTGTGTAACTCTTACACCTTC 3895 37 100.0 35 ..................................... AGAAAGTTTGCAAAATGGAGCAAGTACAATTCAAA 3967 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 34 CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GATGACCCGGCGAAAGCGGATCGTGATCAAGAAGTTGCTGGCGAAGTTTCCACAGTGGGGTATCGCTTGTGTTGATGGGGTGTTATTAAGGTGGAATGAATAGCGATGCCTACAGCAACCCTTTCAGGAAAAGCGCTTTAACCGCTAGCATATTCTAGTACAGAAATCGATTTTGAGAGTAGCGTAACTTTAGAAGCTATAGCTATTTATATCGTTATGATATGAAAAGTTCATCGGCTCACTGTAAACACAAAAAGATTATTTCCCTTGCGGAATGCGCGGGTAGGTAGGTGTTCAAAAGCAAAAATAGGGAAAGGGGTTTCAAATGCGCCTATTGCAACAGTTTTAGCCAAAATAGTTGCTCAAGCACCCGCGCACCTTACACAGACTAGGTTTTAGCTGTTTCTTTACTACTCAATCCAAATTCTCCATGCTATGATTGACCTATCCGCGCATCGGAACCTTGAAAACCTAATAAACACAGTGTTTTGGGCTTGTAT # Right flank : CAGTGCGACTCGTTTTTGAGAAAAAAATAGAAATAATTGTATATAACTCAAAGTGAGAACGACAAGGATTAAAAAAACCTTGAAAATTCCATAACTAATTCTTGGATGTAGGTGTAAATCCTACCTTGGAAAGGAAACAATGACTCCCAATCTACCCACGCCGAGTAGACTCGGAATTCTACAGAGCGAAGCTGGGAATAAGGGCGCAATCAGAGCCAGAAGCAGATATGGCACACTGGCGCTAAAGGGGAGATAGCATGGATAAACAAGACCTAAAAAAGCGTCTTAATCCCAAGCGGTAATCTGAATTAAAAATACCGACTTAATATTTAATTTCTCGCAACAATATTGTTTCGTTAGTTGCATTCCTTTGAGAAGAATATAGGCGAAATGGTCTGTCCTAAACTATCAAAATAATCTGAGAATTGGAACGAGAAAAAATGATGTTGGAGTCTGGGGAAAAGGTCGAAAACCGAGTAGGTAAGACGAGATACGTAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 6205-6896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTE010000107.1 Nostoc linckia FACHB-391 contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6205 37 100.0 33 ..................................... CCTTAGATCCTTCTTCTACATTGGTGGCATGGA 6275 37 100.0 40 ..................................... AAGGGATAGGTAGGCTTTGGGCATCATCTCAGTCAAGTAG 6352 37 97.3 35 ........................T............ GAAAACTATTAGAAGCCAGTCCCTCGGTATACTTC 6424 37 100.0 36 ..................................... CCCTTGCTACTTTCCACACGATATCCCCACTCCTCA 6497 37 100.0 34 ..................................... CCCATGCCCTGAAATTTTTTGAATAGTACGAAGG 6568 37 100.0 35 ..................................... AAAACCGTTGACAACCTACTCGCTAAATGTCCGTT 6640 37 100.0 34 ..................................... AGCGCTGAAGAAAATAAGCATATAGCGAAAATAT 6711 37 100.0 39 ..................................... TGAATATTCCCGACATAGATATTAGAAAACTTAGCTGTA 6787 37 97.3 36 ...................T................. TAGTACACCGTGTAGTGAATTAAATCTAATAATATC 6860 37 83.8 0 ........C...............T....G..A.G.T | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 97.8 36 CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : ATAATCGAACTTTCAAAGTGTTCAATCAAGAACCAAAGATGAACCGCTATCAAGCCGAAAACTTAATTAAAAAGGCATTCCCCGCAGTACCCTACTCTCAAAACGATTTTATCAATGTTAAAGGTGACTATTCACCCTTTAACGGTGACATCGTTTATTGGAGTAAACGCCAATCTCAATTCTACGATGGCGCTACCTCTAAAGCCTTAACTTTACAAAGCCATAAGTGTGGATATTGTGGACTTTCTTTTGCTGATGGTGAAAAAATCCATTTGCATCATGTTGACGGTAATCATCACAACTGGAAACCTAAAAATCTTCTAGCCGTGCATCGTTCTTGTCACAATTTTATTCACTCTTGCAAGGGCAAATCGCCCTAGATTTGTCGTAAGCTGGATGCACCGAAAGATGCACGTCCAGATTGAAATGGGAGGTGCGAGGGATAATACCCTCCATCGACCCAACCTGACCACGAGGACTTCGTGACTCAACCTTGGGTA # Right flank : TATCGAGACAAACCGATAATAGAGCTAGTTTGGGCTAAAGACAGTGAATATTATCAGTTGTCACACGAGTATATTTGAGAGTTTGAGGAAACGAATAATGGCGAAAACTAAATATCAAGCTTATACAAACGTGCCAAAGCCGAGTCCAAAACTGGCAGAAATAATAAAGCAATCGGGGACGACTTTATATTTAGATACGGGGGCAATAACTCAACTCATAGAGTCAGATACATCGGTATTACAAATAACTGTAGGTAGACAAGAAAGCATATTTAAATTGACGGATATTCGTGCGATTATCGCAACAGAACCAGAAATTAAATCGTCAGCGCTCACAAAAATTCTGCGATGGCGTATTCCAGTAATTCTATTTTCTCAATCTGGCGAATTCTTGGGAAGGATTGAACCAGATTACAAAATTAGGGCAGATATCATGCAGTCCCAAGCTATGATGACCGATGCCATGAGAGTTGAGGTTATGCAAGGTGCAACTTGGGGTC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //