Array 1 101907-103521 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBJ01000005.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain LBMM 889 NODE_5_length_149413_cov_18.3288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101907 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 101968 29 100.0 32 ............................. AGGCGCGGGAGGCGGCAGCGGCGGCGCAGTCC 102029 29 100.0 32 ............................. CAGATGATCATCAAAAATATCTGAACGTCTCA 102090 29 100.0 32 ............................. TGCACATTCCTTCGTCCAGATAACCAGCAGCG 102151 29 100.0 32 ............................. ATACAAAACCGTTCAGTGGGGAAAGATCTAGT 102212 29 100.0 32 ............................. CTGACCTCCTGTTTATCCTGCCCGACGTACAC 102273 29 100.0 32 ............................. GCGGTCAACGCTTGACGGCCAAATCATGGCGG 102334 29 100.0 32 ............................. CCGCCCGTGTTGCGCAGTATCGGGATTGATAT 102395 29 100.0 32 ............................. GCGTTTAACGTACTTTTCCACGCCGTCCGCTA 102456 29 100.0 32 ............................. GGGCAATTCGCGGCGGGCGATGTCGCGCAGCG 102517 29 100.0 32 ............................. TAAGCAAGGAGTGGAGAAATGATTGATTTTAG 102578 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 102639 29 100.0 32 ............................. CCAACGGACAACCAGTGTGCTGGAGTGAGGCG 102700 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 102761 29 100.0 32 ............................. TACGGGCGCAAAATCACTGAACATCTGCGCAG 102822 29 100.0 32 ............................. CTTCAGCCTGCCATTTTCTCGGACCTGTAGCG 102883 29 100.0 32 ............................. TCGGTCAGCTCGCCTTTTCGGGTCCAGGTATC 102944 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGCAGT 103005 29 100.0 33 ............................. GCGGCGGCATTGTTCCCGCAGATGGATACCGAC 103067 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTACGCCATCTGC 103128 29 100.0 32 ............................. TGGACGCCACCACGCTGTCAGAATACCAGGCA 103189 29 100.0 32 ............................. GAGGGGGGCGATCCGGGGTCGGGTAAAATCTG 103250 29 96.6 32 .........A................... GGTTCGGGCTGGTTTACGGTGAGCTCAATTTC 103311 29 100.0 32 ............................. CCAGCTCATCGATAAAGCGACCAACCCGCCGT 103372 29 100.0 32 ............................. TCCTCGCTTCGCTGCGGGGCCTCCGGCGCGTT 103433 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 103494 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120204-122246 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBJ01000005.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain LBMM 889 NODE_5_length_149413_cov_18.3288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120204 29 100.0 32 ............................. GCTGGTGGGTCACTATCGGCAAAATTGAACAC 120265 29 100.0 32 ............................. GACGAATGATAGTGACATTTATTTTGACGGTC 120326 29 100.0 32 ............................. GCACGCGTGCAGGATGCTCCAGACGGCCCCGA 120387 29 100.0 32 ............................. CGTCAGCGGTTGACATGGCTAGCAGCTTACGC 120448 29 100.0 32 ............................. AAAATGAAAAGCTGGCTAGCGCCGGTGAAATA 120509 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 120570 29 100.0 32 ............................. GGAATTTTAAACAGAAAAAGGTAAATGTATGA 120631 29 100.0 32 ............................. GCGAATGGACAGTGCAATTCGGCGATGAAATT 120692 29 100.0 32 ............................. CCCCGGCGGGTGCCAGGGCTTGGGAGGTTAGC 120753 29 100.0 32 ............................. GCATTAATCAGCTCAATACGGACGTAGTTCAG 120814 29 100.0 32 ............................. CGGCATAATTTCAGGAATAAAAAATATGGCTG 120875 29 100.0 32 ............................. GCAGGGATTACCCGCCAGGGCCTGGAGCATGG 120936 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 120997 29 100.0 32 ............................. GTTTTACAACTCAACAGACCATGAAACTGTTC 121058 29 100.0 32 ............................. TCGCCGTGAGGCATCCAGATTTAAGCAACTGC 121119 29 100.0 32 ............................. CGCATTCATTTTCAGTCTTTATCAATCGCGGG 121180 29 100.0 32 ............................. GCTAGCAATGATGCGGATTTGATGGGCGCAGG 121241 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 121302 29 100.0 32 ............................. CCTCATAATTAGTTAAGTGGTGGCGGTATTGC 121363 29 100.0 32 ............................. CCGGATCTGGAGATAACGGGGATGTTGACACA 121424 29 100.0 32 ............................. AACTGGATTTGAATTATTTATTTCACTTTCAA 121485 29 100.0 32 ............................. CCATTAACGCCGGAAGAGTCTATAGAAAAATT 121546 29 100.0 32 ............................. GCAGGCCGAATAAACGGCTTAGCGGGAATACC 121607 29 100.0 32 ............................. CCGAACAGCAGGCGATGATTGAAGCGTACGCC 121668 29 100.0 32 ............................. TATGGGTATAATTCTCCATTTGTATGCTAATG 121729 29 100.0 32 ............................. GCGTTTTTATCGTGGACGGCGCCAGCAGCGGT 121790 29 100.0 32 ............................. TGGGGTCGGTGTCGGCTATTGTGGCCGATCCG 121851 29 100.0 32 ............................. ATTCCCCAGCCAGTACCCGTGTCAGTGGGCGC 121912 29 100.0 32 ............................. TAACTGGTGAGGGTGAATTTGTTTGCATCCGT 121973 29 100.0 32 ............................. TACGCCGGGATGATTTCAACTACGTTGGACTG 122034 29 100.0 32 ............................. CCCGCGTGACGGTCTGGGGTGATCATTGATAA 122095 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 122156 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 122217 29 100.0 0 ............................. | A [122244] ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //