Array 1 27701-28643 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046863.1 Corynebacterium ulcerans strain MRi49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27701 29 100.0 32 ............................. GCATCCATCCGCCACGACTGATTTGCACCACA 27762 29 100.0 31 ............................. AGGCAAAAACATGAGCTCCGAAAGCATATCC 27822 29 100.0 32 ............................. TTGACGGCTGGCTCAACAAGGGGATTATTTTG 27883 29 100.0 32 ............................. GGGTGCGCCTTTGGTTCATTTTCACGCTTTGC 27944 29 100.0 32 ............................. TTGACGGCTGGCTCAACAAGGGGATTATTTTG 28005 29 100.0 32 ............................. GGGTGCGCCTTTGGTTCATTTTCACGCTTTGC 28066 29 100.0 32 ............................. CATTGGTATTGAACCGATCCACGTAATACTGC 28127 29 100.0 32 ............................. TCTTCTTTCAGAGTGAATTCCCTACCATTTGC 28188 29 100.0 32 ............................. CATCCATTAAGCTATACGAGTAGCCTTGCGCT 28249 29 100.0 32 ............................. ACGGATACTCAACTATCCACCACTAGCAAACT 28310 29 100.0 32 ............................. CACAAGCGGAGGTGTCGGCGCTCACCCAGAAA 28371 29 100.0 32 ............................. CCCCACTCTCAACCAAGCTGGGATTTGAAATC 28432 29 96.6 32 A............................ CGCTACAAGACACACCACGCCGACCGCGATGT 28493 29 100.0 32 ............................. GGGTGGATGGCTCGATCACGGCTAGCCCACCA 28554 29 100.0 32 ............................. CATTGGTATTGAACCGATCCACGTAATACTGC 28615 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCGCGAAAAACCGTTCAGGCTTTTATTTTTTAAAAGGTCGTGTATAGTAAGGATTGGTTTTGGCTAAGGCTCCGGTTGTGGTGACTGGGGCCTTTTCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTCGTCCGCGGATTTCACAACACCATGCTTGACCAGTGTTTTTATCGTCGCAAAAACTTCGTTGATCTTGGTAGTCTTCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGTTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 108181-107483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046863.1 Corynebacterium ulcerans strain MRi49 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 108180 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 108105 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 108030 36 100.0 36 .................................... GTGGGTGATGTGCTTTTGAAGGATCCCGAGCGGGCT 107958 36 100.0 38 .................................... TGGTTCAAGCATGAGCTTGACCGGCTGAAAGAAAAATT 107884 36 100.0 35 .................................... CTAGGACGCTGCGCTTCATCAGCCGAGGTATTCCT 107813 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 107738 36 97.2 37 ..........................C......... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 107665 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 107591 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 107518 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 99.7 38 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1984396-1987051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046863.1 Corynebacterium ulcerans strain MRi49 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1984396 29 100.0 32 ............................. CTCCAATTGGGGCGATTGCTCCGGTGCTCAAT 1984457 29 100.0 32 ............................. AGATTTGCGTTTCTTATCCGAAAGGCCTTTTT 1984518 29 100.0 32 ............................. CCTGCGAGAAATTTTGACCGTGCACCCCTGGA 1984579 29 96.6 32 ............................T GGCATGGGACGTCAATTTTGCGCCCTAGTTAT 1984640 29 100.0 32 ............................. ACTGTGAAATTCGCGAATGCCGGGGTTATAAA 1984701 29 100.0 32 ............................. GCTCCGTAATCGTCGAAAGTTTGCCTTTAACC 1984762 29 100.0 33 ............................. GGCTTCCGCTGGCTCCCCGCCCTTCGCGTGGTG 1984824 29 100.0 32 ............................. CTATTGAGGTGCATATTAATTCATATGGTGGT 1984885 29 100.0 32 ............................. CGCTAAGGCTTTCGCGTCTCCGTTTTCGTCTG 1984946 29 100.0 32 ............................. TTGAGTTGGTTCCATTCCTCATTCTTTCCGCT 1985007 29 96.6 32 .....................A....... CAGCGCCCATATGTGGATCACCCCGATGCCGC 1985068 29 96.6 32 ............................T ACGATGGTTCGTTCTTCTGTGGATGCTGCGCT 1985129 29 100.0 32 ............................. AAGGGCACTCTGCCTGCAACACTTGCAGGCTT 1985190 29 100.0 32 ............................. GGTTTCTAGCCATAATTATTTTCCCCTTTCAA 1985251 29 100.0 32 ............................. GGAGAAGTGGCTTACTGCCGAAAAGTCTACGA 1985312 29 100.0 32 ............................. AACCCGCGCTCGCCCTAATCCTCATAAGATTT 1985373 29 96.6 32 ............................T AACGTCCCAGTTGTTAGGGATGGATTTTTCCA 1985434 29 100.0 32 ............................. GGGCAGGATTGATTCTGGGCATGATGCGGCGT 1985495 29 100.0 32 ............................. GTATAAAGCAGCGCACTCTGATCTTTCGCAAA 1985556 29 100.0 32 ............................. CAAGCCCGCTCGGGATCCTTCAAAAGCACATC 1985617 29 100.0 32 ............................. AGATCGCTGATTTGCAGGATGATCAAGAAGCG 1985678 29 100.0 32 ............................. AGTGCAAGGCTACTCTTATAGCTTAATGGATG 1985739 29 100.0 32 ............................. ATGCCTTTCTCTAGAGCCGCCAACGCAGCTAA 1985800 29 100.0 32 ............................. GCTACGAGCAAGCCGGCATCCGCGTCTGCGGA 1985861 29 100.0 33 ............................. GTGTGATCCGATTGCATCCCGTAAGGAATACAC 1985923 29 100.0 32 ............................. CAGCCATGCGTGCACCGTTTTTGTGCATGATG 1985984 29 100.0 32 ............................. TTTTCACTCCACCTCCTTCCCTTTCAGGCGGT 1986045 29 100.0 32 ............................. GCCTCAATCAAAGGATCCAGCGTCGCCGCAGA 1986106 29 100.0 32 ............................. TATCTCAAGGAAAAAGACCGGCTGACTGCGGA 1986167 29 100.0 32 ............................. TCCGGGCTGGATGCCCATAAGTCGGCGCGCAT 1986228 29 100.0 32 ............................. CTGATGGAGCGGGGGCGCTCCCTTTCTGAGCT 1986289 29 100.0 32 ............................. CTCCAGCTTCTCCCTCACCTCTCTAACTTCCA 1986350 29 100.0 33 ............................. TGAGGTTATTTATTTGGTGAGGGAGTGATCAAA 1986412 29 100.0 32 ............................. TCCTCGCGATCATCGGAGGAGCCATCGACGCC 1986473 29 100.0 32 ............................. AGAGATTACGCAGGCAGGCCAAGTCCATGAGA 1986534 29 100.0 32 ............................. CAATCAGCCCTCCGAATCGGCAAGCATACTGC 1986595 29 100.0 32 ............................. CGATGGAATGGTGACTTTCATACATGAATCTG 1986656 29 100.0 32 ............................. CGAAGCTCAGAGCGCAGCTCCACCCACACCTC 1986717 29 100.0 32 ............................. ATTGAGGCTTATGGTAGGCATCTGACTGCGGG 1986778 29 100.0 32 ............................. TCTCTACACATGGTGTAACGGGCCAATGCACA 1986839 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 1986900 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 1986961 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 1987022 29 82.8 0 ....................A...AGC.T | A [1987041] ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.3 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //