Array 1 247535-245405 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG704813.1 Pasteurella dagmatis ATCC 43325 SCAFFOLD4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247534 28 100.0 32 ............................ GTTCGCTCCATCAAAACTTTTATAGAGTTCAA 247474 28 100.0 32 ............................ GCGAATCGCGTCCATTTTGCTAGAATTGAAGC 247414 28 100.0 32 ............................ ATTTTGAATCTGATTTATAAAACAAGAGACAA 247354 28 100.0 32 ............................ GCTGGTGGAATTGCGCAAATGCTAACTAAACC 247294 28 100.0 32 ............................ TTTTTGTTTTAGAACAAACCTCACAAAACACT 247234 28 100.0 32 ............................ AAAATATTATATTTGCTCAAGCACAATAAAGT 247174 28 100.0 32 ............................ ACGATACCACCGACGCCCGCGCCGATTTTTAT 247114 28 100.0 32 ............................ ATAATAGCACCTCATAATAGATTAGATTAATA 247054 28 100.0 32 ............................ AGCGATCTTGGGCTTATTGGGAAAGTGGAGAG 246994 28 100.0 32 ............................ GGTGATGTTGCGCAATGGTTGTAAAGCGTTCG 246934 28 100.0 32 ............................ TGCGTGAGACAGTTCTCTTAAGTGTTGAATGA 246874 28 100.0 32 ............................ ATATAATAATTAAAGGTCAACACTTTTTTATT 246814 28 100.0 32 ............................ AAATGATTTAAACGAAATCTTCAGGGGGTAAA 246754 28 100.0 32 ............................ TGAAGATAAACAGCTTGAAGTTAAGCGTAGTT 246694 28 100.0 32 ............................ GCAGCGATGAAGCTGCTTGTCAAATAGTCAAA 246634 28 100.0 32 ............................ TCAGGTGGAATCATGCCGTCTGACATATCACC 246574 28 100.0 32 ............................ ACAATCTCAAAGTTGCTTTTTGTTCACCTTGA 246514 28 100.0 33 ............................ TTGCTGCTGTGGGCTACCCGCGGCGCTGATTGT 246453 28 100.0 32 ............................ GTTTTGGATGGACAAAGGGGAATTAAATAAAA 246393 28 100.0 32 ............................ TTTTTAGTTTGTAGAACTTAAGGGCTTATCCC 246333 28 100.0 32 ............................ TTGCACCGCGCCGATCAGCTTATTGAACTGTT 246273 28 100.0 32 ............................ TCAAAATTTTAATTTCGCGGTTGTAAAAATTG 246213 28 100.0 32 ............................ GTCCAGCGCGACTAATGTGTAAAAAAACGGAT 246153 28 100.0 33 ............................ AACTTTAACAATTAACACTAGCGGATTCAATAA 246092 28 100.0 32 ............................ TTGTTCTGATTGTGGTTGTGCTTGTGGTGCTT 246032 28 100.0 32 ............................ TTTAACGTTTGATAACTCTTGAATAGACCCTT 245972 28 100.0 32 ............................ GTGAGCAGTTAAATGCGGGGTGATAAATGACT 245912 28 96.4 32 ...............T............ GTTTTTACGAGGGATCTCTGTGTAAACCTCAC 245852 28 100.0 32 ............................ TTTCTCATCTTTGACCCCCGTATAATAACTTA 245792 28 100.0 32 ............................ TACGCCATTTTGTTGAGCATCGGGCGATATAC 245732 28 100.0 32 ............................ ATATACGCATCGCAAATTTTCCAAACCCACAC 245672 28 100.0 32 ............................ AGCTTGCCGCGTTGGAACGCGTTAACATACGG 245612 28 100.0 32 ............................ CAATCCGGATATATCAGTCTTGTGTATGTATC 245552 28 100.0 32 ............................ CACGAAAGAAGCTACTGCTAGACTTGGTTTGG 245492 28 100.0 32 ............................ CATAAAACTCAATTGTACCGTTTGCATTATCA 245432 27 85.7 0 ....................-.G..G.G | C [245409] ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTTATATCAGCAATTATTGCAAAGTGGACTAGAGGATTATGCTTTGATTAGTCAGGTCAAAGTAACTCCAACTAGCACTGAGCATCGTTGTTATAGTCGTGTTCATCGTAAAGGACAAAGTTGCATCCGACGCACAGAAGCATTTCTCAAAAGCATTAATAAATGGAATGAGGGTATTCGAGAGGAAATGCAGAATCGTCATCAAAGTACAGCCTTTTTTCCTCATATTCACTTAAAAAGTGCAAGCACAAGCCAACGTTTTATCTTAGCAGTGAAAGAACGAAAAATGTTAAAAGCTTGCGAGGGCCAGTTTGGTAGTTATGGTTTAAGTAAAATAGCAACAGTACCTCATTTCTAAATGAGTTTATAACCCTTTTTTCTTATTGAAATTTTTATCAAATAAGATCAAAGGGTTATAAATATTCTTGTAAAAAGGGTGATAAACCAAAATGTTCTTTAACAATTTGAAGAATAAACTTATTTTCGTTACACTAACATA # Right flank : TTTAACTTGTTAGTAGTGTGGTTTAACAGTAGAAATTCATTTAAAAATTATTTAAACAGTGTTTGAATATTATTCATTACTTATCAAGGGGGAAATATGCTTAAAACACCTTATATTACGTCTTCTGATTTAAAAACTATTTTGCATTCTAAACGAGCGAATATTTATTATTTGGAGCATTGCCGAGTGTTACTAAATGGTGGGCGTGTTGAGTATGTGACAAATCAAGGTAAGGAGTCGTTATATTGGAATATTCCCATTGCCAATACAAGCTGCTTGCTTTTGAGTAGTGGAACATCAATCACTCAAGCGGCAATGCGTGAATTATCGAAAGCAGGCGTAATGGTTGGATTTTGCAGTGGTGGCGGTACGCCATTATTTAATGCAACGGAAACCGAGATAGGTTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCGGTTGAATATTTACAACAATGGTGCAGATTTTGGTTTGATGATGAAAAGCGTTTGAATGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26002-25673 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG704812.1 Pasteurella dagmatis ATCC 43325 SCAFFOLD3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 26001 29 100.0 31 ............................. TGCATTGCATAGAACACAATCGCCAAGTGGT 25941 29 100.0 31 ............................. ACTGCGTTTCACGAAATCAAGGGCGGCAAAT 25881 29 100.0 31 ............................. TTCTTGCCGTTGTCGAGATTGTGCCAGTACG 25821 29 100.0 31 ............................. ATAAGCACTTGAATTTCTGCCAGCGGTTGAT 25761 29 96.6 31 ............................A TTGGTATTCCCCTGTTCTCATCTCAAACCAG 25701 29 89.7 0 ....................T...A...A | ========== ====== ====== ====== ============================= =============================== ================== 6 29 97.7 31 GTTCACCGCCGCATAGGCGGCTTAGAAAT # Left flank : ACCATATAGCGCAGACACTTATTTACACCGTATTGGGCGTACTGCGCGTGCAGGTAAAAAAGGCGTTGCGGTGTCTTTTGTCGAAGCACACGACTATAAATTACTCGGCAAAATTAAACGTTATACCGAAGAATTATTGAAAGCGCGCGTAATTGAAGGCTTAGAGCCACGCACTAAAGCCCCGAAAGATGGCGAAGTGAAGACGGTCACTAAAAAGCAAAAAGCACGTATTAAAGCGAAGCGTGATGAGAAGCAAAAACAAGAGCAGAAAAAGAAAACAAAACTGCGCCATAAAGACACTAAAAATATTGGAAAACGCCGTAAACCAAGTTCAGCAACGAACAGTGCAGAATAATTAACAACCTATCTTTAACCCTTTTTTCTTAAGAGATGATTTATCGAATAAGATGAAAGGGTTATTTTTATGCCAAAGAAAAGGTTTTTCACCGTCTAAGCAGCCCTTCCTTGATGAATAAATCCACATTGATTAGACTAGTCTA # Right flank : CTCGCCGGTTTTCAAGACCGGCGGTGCCTTTATGTTTTAGATCGACCTCTTGAATGCCATTCATGCGCTCTTCTGGAAGGTAGATTATGGGGACTAATCGTTTTGGGGCTTGCCGATTATAAAAGTGCGGTGAGTTTTTGCAGAATTTCATTGGCTTGAATTTTGTCCATACTTTCAGCTACTAAATAATGTTGGTTTTTACCGTAAGCGCCGATTAATTTTGGATCAGTTGCACCATATAAGGTGATATTGGTTTTATCTAAAGCCGCGGTTAAATGCGCCAAACCTGTATCAACGGACACCACTGCTTTGGCATTGACAATCTGTTGTGCGAGTGCAGAGAGGTTCGATTTTGGCAGAATTTTTACCAACGCCAGATCTTGAGCGATCATTTCTGCACGCTGTCTTTCTGATGCATTGGACCAAGGTAAGCGAATTTCCAAACCAAGTGCGGTCAATTTTTCTGCTAATTTTCGCCATTGTTCGTCTGGCAAGAATTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //