Array 1 31951-29836 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRJS01000019.1 Phocaeicola plebeius strain AM17-44 AM17-44.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 31950 47 100.0 29 ............................................... CTTTGAATTGTAATACTTGCAGAATCAGC 31874 47 100.0 29 ............................................... ATATCTCCAAACAGATGGCATTTCTTCTG 31798 47 100.0 29 ............................................... AGAGATTTAAGATGAAAGTAAACATAGGG 31722 47 100.0 30 ............................................... CAGTCCTCCTGATATATTGGTATTGGCTCC 31645 47 100.0 30 ............................................... TGCCACCAAAAGAGAAGCATCCCTTTCCCC 31568 47 100.0 30 ............................................... TCAATCAAATTACGGTAATCCAAACGTTTC 31491 47 100.0 29 ............................................... GGTAAGCGAAGAGGAAGATGCCGTTCAGA 31415 47 100.0 30 ............................................... CACTAGTGTGCCAATACCCATCGTGCTTCT 31338 47 100.0 29 ............................................... GGATAATACCCCTCTACTACTCATACATG 31262 47 100.0 30 ............................................... AGTATGTTCCACGTAGAACAAATGAAAATT 31185 47 100.0 30 ............................................... CCGACATGTGTGTTTTTAGAGGCAATCCCG 31108 47 100.0 30 ............................................... TCAGAATTCAGGCAAGAAGAGTGATGTCAG 31031 47 100.0 30 ............................................... TTCAGAAAATGAAAGTAGCCAAAGGGATTG 30954 47 100.0 29 ............................................... ATCCAATTAGGAGTAGTTTCTTTCCAGCC 30878 47 100.0 30 ............................................... AGTTCTGTCCCTACAATGACAAGAAGCATC 30801 47 100.0 30 ............................................... ATCCATCGGAATTGGAATCAAATTCAACGC 30724 47 100.0 30 ............................................... TCATCAACTCATCGAATCGCACTTTGACCT 30647 47 100.0 30 ............................................... CAGGCTGAAACTGGTTAACTATATCCTGAC 30570 47 100.0 29 ............................................... TTAACACCAGCATCAGCATAACGCTGCAT 30494 47 100.0 29 ............................................... GGAGTTAGGTATTGATGTATATTCAGGTT 30418 47 100.0 29 ............................................... ACCAAGATACTCAGGCATCATCAGTTCGT 30342 47 100.0 30 ............................................... TCCCACAACTGATTAATATCCGCACCGCGT 30265 47 100.0 30 ............................................... TCGTAATAAGCTGTCCACGTAAACGATGTA 30188 47 100.0 29 ............................................... GTCTTGTACGCGTAAGGAATTTTAGCATC 30112 47 100.0 30 ............................................... TGCCCCTTGCGGGGCATAACTATCGACTGC 30035 47 100.0 30 ............................................... AAGAGGTTAAGGAGCAAATAATTACACGTA 29958 47 100.0 29 ............................................... ATAAAAAAATAGACGAGCTCCGAAAAGAA 29882 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 28 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTAGGCTTCTGGATTGGCGGCGCGAACGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACGGCTCGTACGCCTCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGATGAGAATCTGGTGCTGTATTATCCACTAAACGGAAAGAAGCGGAACCTTGACACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGCAACAATGCCAAACATCTGCCTCTTCCTTCAAAAGCTAAGTTTGATGATAATGACGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : TCATTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGACTTTACTCTTTTTATATGCACAGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATGGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAGTCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAAGTCAAAAAGAACTAGAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAAAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 398-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRJS01000054.1 Phocaeicola plebeius strain AM17-44 AM17-44.Scaf54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 397 36 100.0 29 .................................... AAGTTATACATTAGTTACTTGTCTGAAAG 332 36 100.0 30 .................................... AATTGATTACAGTATGCCGGATGCGACTGG 266 36 100.0 30 .................................... GAGTTTTAGATTGTTCCTCTTCAATTCCAA 200 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGGTTTTATTATTGTTTTGAATGGTATATCCAAC # Left flank : ACGCAAAACCATGTTTATAGCCGTGAGGTTATAAAGCAGGCTTTAAAACAGAATGCCGGAACTATCCACATGGAGTCATTGAAAGATTTTGGAAAAGGTAAGGACGGTTATGTAAAAGACGAGTATAAGTATCTGCTTCGTTATTGGTCGTATTACGAACTGCAAAGTATGATAGAATATAAGGCGAAATTGGAAGGTATTGAAGTGAAATATATTGACCCTGCATATACCAGCCAGACATGCAGCTATTGCGGAGAACGTGGAGAACGTAAGAAGCAAGAAGAATTTGTTTGTACGAATCCCCAGTGTAAACGACGAGGAGAGAAAATAAATGCAGACTTTAATGCTGCAAGAAATATTGCGATGAGTAAAAAAATCGTAGAAAGATAATTAGAGAAGAATTTTTCTAATAGGGGCTGCTGGAAGTCCTTAACCTGAGATAGAAAACTATACTCAGGAAGTACGTCAAAACATTGAAATTGACAAGCTTAGAACAAACA # Right flank : CTATAAAGTTGCCTGCGATGATGTGCGCATGGGGGTTGATAATCGTGCCTTTTTTTACTGATTTTAGTTATAAGGTAATATACTTATAAGGACTATTATTGCTAACGCATGTGGGTAACCATTCTATTTTCCGCCTTGACACGCATGTTCCCTAAACCTACCTTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTTTTATTATTGTTTTGAATGGTATATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //