Array 1 1363883-1363123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMR010000001.1 Lactiplantibacillus argentoratensis strain LQC 2320 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1363882 28 100.0 33 ............................ TCGTTGCCATTGATTTATTAACCCGTTATTTGC 1363821 28 100.0 33 ............................ CGATTCAAACTGGTACAACGATTTGATGTGGAA 1363760 28 100.0 33 ............................ TAACTATAATCCATATTCGTTCAATCCATATTT 1363699 28 100.0 33 ............................ TTACTAAAATCTGGCATGCAAGCTAACTTTGCC 1363638 28 100.0 33 ............................ TGCTCAAATGCATATTACTAAAGAACCCTTTAA 1363577 28 100.0 33 ............................ TTACAAATCACAAGCAAAACATTGGTATCGAAA 1363516 28 100.0 33 ............................ TAAATGACTCTGCCGCCACAATACGGACATGGG 1363455 28 100.0 33 ............................ TCGAAAGGTTGCCTTTCTCCTCTGTACTGGTAT 1363394 28 100.0 33 ............................ TACCTCAAATCCATGGTCTCCATGACCCCGTTG 1363333 28 100.0 33 ............................ TAACTTTGAGACTGCGGTCATTTCTTTGGCTGG 1363272 28 100.0 33 ............................ CGTTTTGACGATACCTTGATTAAGACGTCCCGG 1363211 28 100.0 33 ............................ CGTGTCATTGTAGATAGGTGCTTCTGGCTCAAC 1363150 28 89.3 0 ............C..........A...T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GAAAACCGGCGCCCAATCAATCTTAAAAAACTAACCAAGAAACGCGGAATATTTGCTTGGAAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACGATATCTTAGAAACCATTGCGGGTTTGCTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAGATTGTGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGCAAGGTAGTTATTGAAGGATGGAAATGAGTTGGCGTGTATTACGGCTCGCGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATACTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTATTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : AAGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGACTCGCTTATTTTAGCATCATTCCCCGCTAAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTAAAATTGGCATTTAAAACACCACTGGCTGATCAGATGCGCCCGCAATCATTGGAACAGATGGTCGGGCAACAGGATCTGTTGAAGGCAGGCCAGCCACTACGCCAGATTATTGATCAACATGTTAATATTCCACTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACCAAAACATTGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : CTGTTCCCCGTGTATACGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1368822-1368366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMR010000001.1 Lactiplantibacillus argentoratensis strain LQC 2320 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1368821 29 100.0 32 ............................. ATCAAACCGATCAATAACCCGGACCTTGGTTT 1368760 29 96.6 32 ............................T GTAACTACGCTGGCATGTCAGTTGAGACGGTA 1368699 29 100.0 32 ............................. AAGTAAGAGTATCACGTTATCTGGTCAATCAA 1368638 29 96.6 32 ............................T ACGATTGTTGACACTGTTGATACCATGTATTT 1368577 29 100.0 32 ............................. GTCCATGCGTCGGCTTCCGGCGTAAATGACTT 1368516 29 100.0 32 ............................. ACGATCGACACTTCTAAGTATCCGAATGGTGG 1368455 29 89.7 32 ................T.......C...T TCTAAACCCGTCGATTTCGACTGGTTTAAAAA 1368394 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : TACTGGTAGTTATATACGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAACTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTTATGTGAGCAAGAATCGTTGAAACAATAAATAATCTGCGCTACGGATGAGATATGCCTGCTGCAAGCCTAGTACTTGGGCCCACTGCATAGTTATTAATCATAAATTTATCTCTTAGCATTTTGTATCACATAATTTATGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCTATACATTGAAGGCCGCCTTGCTTGTTTCGTCATATTAATAGTGTTCATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTACTGCTATAATAGGCTTTGTTTAGT # Right flank : AACAAAGCCATAGATAAAACAACAAATCACTTTGAAACAAATACGACTTTACAGATATAGACGTGCACACTTTACACATCAGCACGCTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATGTGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCCTTCTATGTCATTTTCTATAAATGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTGTTACCAATAAAGGCCTTCATTTCACTCAACGCCATAGCTATCGAAACACCTTGCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1377124-1377273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQMR010000001.1 Lactiplantibacillus argentoratensis strain LQC 2320 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1377124 28 100.0 33 ............................ TAGCAAAGCGTTACTCAGCACGACGTTAAGTGA 1377185 28 100.0 33 ............................ TGCGGGGTGAGTTGTGGAGTACATGGTAATCCA 1377246 28 82.1 0 ......................GTG.GA | ========== ====== ====== ====== ============================ ================================= ================== 3 28 94.0 34 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCGGGGCTGGCTTTGAGCTGGTTGGTCATCGTGAGACGGAATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCTATGCTTCACCGAGCTAAAGGGCACGGCGTTCGTTTAAGTCGTGTGACATTTGAAGGGCTCCTATGTGTCAAGGACCTACCGACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTAATGACAGTCATTCCTGAAGTACAGTGATTGACTTTCATCGGTGTTTACTGGATTGGTGGGCCCGGAACCAGTGCTGGCGAACCAGGTATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGTTATCCTCGAAGTCAAGCTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGGGACGGGATCTGTCAAGT # Right flank : ATCCTTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAGTTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTGAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACACCAGCGAACATCTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //