Array 1 8368-2659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBF010000022.1 Bifidobacterium sp. 79T10 Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8367 29 100.0 32 ............................. AGTCCGGCCGGTTCGACACCCTGACGATGCTC 8306 29 100.0 32 ............................. TCGCTCGGCGGTGATTGAGTTTTGCTTATCAA 8245 29 96.6 32 ............................T TTGCAATGCACGATGTCGGCGGGGCCGTAATC 8184 29 100.0 32 ............................. CAGGTCACGTCGTTCGCGGCCTCATTGGTCAG 8123 29 96.6 32 .........A................... GATTGCGAGGCCCTGATGCCCAGCTACAGTCG 8062 29 100.0 32 ............................. TCCCAGTATCCGGGCGCGCCTTCGACCGGCTT 8001 29 100.0 34 ............................. GTGCTGGGCTTCGCGTCCTTCATGTTCAGCCGTT 7938 29 100.0 32 ............................. TCAAGACGCACTACGAGAAGGCCAAGGGCCTG 7877 29 100.0 32 ............................. GGCCGGCGATGGCGGCGGCGTTACGCTGCGTG 7816 29 100.0 32 ............................. GGTACCGGCTGGATCAGCGGCCACTCCGGAGG 7755 29 100.0 32 ............................. ATCGCGTGAGTCTCGCCCGGACCATTGGGAGG 7694 29 100.0 32 ............................. ACAACTGTGTTGATGGTGCCTACCTGCATTCC 7633 29 100.0 32 ............................. GCCTATAAGATGTTGCCGAATGACGGGACGAT 7572 29 100.0 32 ............................. GAGCAGATTGCCCCTCTACGGCCGAATGTAAT 7511 29 100.0 32 ............................. TATCTCAACAAGCTGCTCGCCAACCCCGCAGC 7450 29 100.0 34 ............................. CAGGCGCTCAAGGAGCACGAGGACGCCAACGAGT 7387 29 100.0 32 ............................. CTTGGCGGGGATGCGGCCCGTGTCGGGGTCGC 7326 29 100.0 32 ............................. TGGTCCTGGACTTTGAGCACGTAGTCGGCGCG 7265 29 100.0 32 ............................. GACAAGCAGATGACTCTTCCGGGCATGGAGGA 7204 29 100.0 32 ............................. TCATACGCGGTGTCGTCGCCGGCCGCAAGCGC 7143 29 100.0 32 ............................. GACCGGGACGAATACATGGTGGGCATGCTGTC 7082 29 100.0 32 ............................. TCGTCAAGGCCATGCTCGCCGAAACCGACATG 7021 29 100.0 32 ............................. GCGGTCAGGTGTTCGCCCGGCGTCCACGCGTT 6960 29 100.0 32 ............................. GCGGCCGACTTCCCGCCACCACGACGGGCCTA 6899 29 100.0 32 ............................. GAGTGGGTCGCCGACCAGATCAAGCTCATCCA 6838 29 100.0 32 ............................. GTGGGCAACCTGTTGTATAACGCCGGCGCGTC 6777 29 100.0 32 ............................. GGTCGGGCCGTGGAGACTGTACGGCTTCACGT 6716 29 100.0 32 ............................. CGTCAGCATTGGTACATCGCGCAGCGCGGCAG 6655 29 100.0 32 ............................. GTGACCTCCCAGCTTGCCGCGAACGGCGTGCA 6594 29 100.0 32 ............................. AGTCGTATCGAATCGAGTACCGCGCGTGCGGC 6533 29 100.0 32 ............................. TCCTATGTTGTTAATGCTGTTAGCAATGGTGA 6472 29 100.0 32 ............................. GCGATTGGGGCACCGCCGTGAGGATCCTCGAG 6411 29 100.0 32 ............................. TCGTCAAGGCCATGCTCGCCGAAACCGACATG 6350 29 96.6 32 ............................T GGGCTTTTGCGCTGGTTTCATCATACCGTTTC 6289 29 100.0 32 ............................. ATGATAGGCAACGTGGTAAGCACGGTGAAAAA 6228 29 100.0 32 ............................. GAATGTACTTGTACGTGTAATCGGCTTCGAGG 6167 29 100.0 32 ............................. TGCCATGTGTTCACGCCGGGCGATGCTGCCGC 6106 29 100.0 32 ............................. GGGCCGGAATGGTTTACCGAATGGCGGTTGCG 6045 29 100.0 32 ............................. CCGGCGTTCCGCAATGCGGTCAGCCATGCGCG 5984 29 100.0 32 ............................. GTAACGAACTGCAATGGCTGGCCGTGGAATTG 5923 29 100.0 32 ............................. TGGCGTTCCCGCGTGTGGACGCCCGCGCTGCG 5862 29 100.0 32 ............................. CGGTACAAGCGGGAGCTGCGCGTCTACGTGCT 5801 29 100.0 32 ............................. GGGAGGCGCGCCATGCCGGACGACACCACCAC 5740 29 100.0 32 ............................. GCGGCCTCCAACGCTTCGAGGCACGTCATTGC 5679 29 96.6 32 ............................T CCGGGGCGGTCCGGCAGTTGGAGCGGCCGACG 5618 29 100.0 32 ............................. GACCCGAAGTACGGACGCGGACTGTGCAAGCG 5557 29 100.0 32 ............................. GGTTCCACAGCATCGGCGAGTAGACCTTTCAG 5496 29 100.0 32 ............................. CTCACCGGCATCACCGTCACCGCCACCATCGT 5435 29 100.0 32 ............................. CCCAGCAAGCGTACGGACAGCAGCCGAACGGC 5374 29 100.0 32 ............................. GGCGGATTGTCGCGGCGCCGCAATACCCGTCC 5313 29 100.0 32 ............................. TGACGGACACAAGGGAAATCACGCGAAATGAG 5252 29 100.0 32 ............................. GTCTGCATGTTGCTTGTCGCGGTGGTGGCGAA 5191 29 100.0 32 ............................. GGAGGCGACGAATCATGACGCTCACGGCCTTC 5130 29 100.0 32 ............................. GTTGATGATGTCCATAAGCTTTTCCATGGGTG 5069 29 100.0 33 ............................. GTCTTGGTGGCAGCGTTCCAAAAGAACGGGGAA 5007 29 100.0 32 ............................. CGTACGTGCTGACCCAGATAGTCCCGGACAAC 4946 29 100.0 32 ............................. CGTCCCAGTCGGTCGGACAGTACGTGGACAAG 4885 29 100.0 32 ............................. CGTCCCAGTCGGTCGGACAGTACGTGGACAAG 4824 29 100.0 32 ............................. TGCCGGATGGGCTCAAGGAATGGTACAACACG 4763 29 100.0 32 ............................. TTCTCCACCTCCGCCGCCTCGAAACTGTCGAC 4702 29 100.0 32 ............................. CAACCGAAGACGAGATCCGCGAAGCCGAATCG 4641 29 100.0 32 ............................. GCGGCCTCCAACGCTTCGAGGCACGTCATTGC 4580 29 100.0 32 ............................. GCGGCCTCCAACGCTTCGAGGCACGTCATTGC 4519 29 100.0 32 ............................. CAAAGGAGAACAAGCAATGAACACCACCACAG 4458 29 100.0 32 ............................. GGCACGATCTCGAACACGTGTTCGGGTTCGTC 4397 29 100.0 32 ............................. GGACCACGCCGGTCTTGCCTTTGACGCCGTGC 4336 29 100.0 32 ............................. TGAACAGTGAAAGGGCGGCCATGACAATCATC 4275 29 100.0 32 ............................. TCACCGACGACGAGAAAAACGCCCTCATTGAC 4214 29 100.0 32 ............................. TACGTCAAGTCTGTGGAACTGGTGGACGACGA 4153 29 100.0 32 ............................. GCCAAGGCGTACCAAGTGAGGCAGATTCTCAA 4092 29 100.0 32 ............................. TGTGGGGCATCAGCAACGCCGGCGACTACAGG 4031 29 100.0 32 ............................. CCGCGCTTGTCCGTCTGCGAACCATCCGGCTT 3970 29 100.0 32 ............................. TGGTGCAACCCCAACCCCTCGTCAGACGCCGA 3909 29 100.0 32 ............................. GCGCCGGACAGGCCGCCGGAGAGGATGTCGGT 3848 29 100.0 32 ............................. ACCGGGAACGACTCAGAAGTCGGGTTCGTCAT 3787 29 100.0 32 ............................. GGGCGGAGAACGAGAACGAGCGGTTGCGCACC 3726 29 96.6 32 ............................T GTGCGGTGCGCGAACCTGATGCGCCATCCATC 3665 29 96.6 32 ..........................T.. GGCTGGAGAGTGTTTTCAATGAACGCCCGTTC 3604 29 100.0 32 ............................. GTCGAAATCAATGTCCCAGTAGATTTCTCCGT 3543 29 100.0 32 ............................. GCGCTACGATTATGGACGTTTCCAAGTTTACC 3482 29 100.0 32 ............................. GTGCTGTCGGCCGTGCCCTCGGTGCTCATGAC 3421 29 100.0 32 ............................. TGGCTTGAATCGGGCCAGTGGCGCGACTACCA 3360 29 100.0 32 ............................. TATCCATCCTTCACGCGAGTTACAACCACGTT 3299 29 100.0 33 ............................. CCGCCCGACTCCTTGCCCGGTTGACGCGACACC 3237 29 100.0 33 ............................. CCGCCCGACTCCTTGCCCGGTTGACGCGACACC 3175 29 100.0 32 ............................. CGGTCTCGGCTTCATCCAAGGCGTGTGGAGCG 3114 29 100.0 32 ............................. ATGCCAGTCAAGGGCACTTCGAAGGTTTGCTC 3053 29 100.0 32 ............................. TGGGGGCGATGCTGTGGCGCAATGGGAAGGCC 2992 29 100.0 32 ............................. GCGGCATCGACAAAAAATCCAGCATCCCGTTC C [2987] 2930 29 100.0 32 ............................. GTGAGCACGCCGGACGGGCGCGCGGCCTCGTC 2869 29 96.6 32 ................T............ AGGTGCGTGGCCGGGTTGGGCGCGTCGTAGTC 2808 29 100.0 32 ............................. GCGATTGGGGCACCGCCGTGAGGATCCTCGAG 2747 29 100.0 32 ............................. GTCGCTTCTTTCCTTTCAGGGTGACGTGTTGA 2686 28 75.9 0 .............G.....T.-..T.TTA | ========== ====== ====== ====== ============================= ================================== ================== 94 29 99.5 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : CTTCGACCATCGTCGACCAGCTGCCCGTCGAGCTCGACAAGCGCGGCAATATCGCCCGCAACGACAAGTTCGCCACCTCCCAGGACGGCGTCTTCGTGTGCGGCGACGCCGGCCGCGGCCAGAGCCTCGTGGTGTGGGCCATCGCGGAGGGCCGCTCCTGCGCGGCCGCCGTGGACGAATACCTGTCCAGCGAGCACACCAGCGAGCTGCCCGCGCCGATCACGGCCTCGCAGCGTCCGATGATGCTGCCCCGCTGATACATGGTTGATACCTGTCCGATAGAGGGGATTCGTTTGCTACTCCGACCGTGACACGTTCCTCTGGGTTGGAATCATTTAAGGGTCTCTTGTATATGCCAGTTGCCTGATTGGCATATGCAAGAGACCCTGTTGCATTGCATGGCATGATCAGAGAGCGTTCTGGGCTATGGACACTCTGAAACCGAATGAAAAAACTTTGATTCCATACCGTATATGCTGGTATATAAGGGATTTTGAAGT # Right flank : GCAAGTTGGCGTCCGCTTTGTGAGCGGTGTTTTCCGCAGTGTAGGCAGCGGGTTTCCCGCGGCGTGAGCGGTGGTGCCGCTGCCTGTGTGCGTGTTGTGTTGTTGTGGTTGGGTTATTTGGTCATGAGGGCGTGTTCGCTTCGGTAGGAGCGGCCCTCGAATCTGATGAGTCGTCCGTGGTGGACGGTGCGGTCGATGAGGGCGGCGGCCATGTTCTTGTCGCCGAGGATGCGTCCCCATCCGCTGAATTCGATGTTGGTGGTGTAGATGATGCTCCTTGTCTCGTAGCTGTCGCTGATGATCTGGAAGAGGAGGCGGCTGCCTTCCTCATCGATGGGCAGGTAGCCGAACTCGTCGATGATCAGCAGGCGCGCCTTGCCGATGGCGGCGAGCTCCCTGTCGAGACGGTGCTCCTGTTGGGCGCGGCGCAGGCGCATGAGCAGTCCGGTCGCGGTGAAGAACCTGACTGGTACGCCTTTGTCGCAGGCGAGCCTGCCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 208-786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBF010000016.1 Bifidobacterium sp. 79T10 Contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 208 29 72.4 32 AA.CAATA.A................... CGTCCACCATCGTCAACGGGTGCAAAACAATA 269 29 100.0 32 ............................. AGCGCGCAGATGCTGAACGCGGCGACGACCAT 330 29 100.0 32 ............................. GGATGTATACGTTGTATCTGCCTCCGCTTTCC 391 29 100.0 33 ............................. TAGGGGGGCATCATGCTAATAAGTCTTGCAATC 453 29 100.0 32 ............................. CGGTACCCGGCCGCGAAATTCTACGCGAACGT 514 29 100.0 32 ............................. GGTTCGGGTGGATGGTGAGCGGTTTCAACGAT 575 29 96.6 32 ...................A......... ACGCTGCCGGCCCCCTTGGTGCGTCGTGTCTG 636 29 100.0 32 ............................. ACCAGCGACGACTCATACAACCTCGACCACTT 697 29 100.0 32 ............................. CACACCGGCCGCGACTCGTACCGGGTCCGCTG 758 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.6 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : ATGGTCTGGTACAGGGACAAGCGCATCAAGACCGAATACGGCATGAGCATCATGGACAAACGCGTCGAGCTCGGGCTCGTCGCCTGAACACCTGCGATAACGTGCTGAACGACCATACAGACAACGAAGTCCAACAAAACGTCACCGCCCCCAAACCATCAGCCCACACTGCGGAAAAACACCGCTCAACCTGACGAACAAACATTGA # Right flank : CTGTCCGTACCAGGTGCCGGTGAAGTCCATGGCGGGGACTGTCCCGGAAAGTGTGTAACTGGCTTTGATCGCTGGTCGTGAGACCGGTGGGAAAGGGCCTGTGATGAGCATGCCGACTGAGACAATGGAAACCATGACAACGACGACGGCCGTCGGCAAGGAAGCCACGAATAAACCAAGGAAACGCAGGGCGCCGAAGACGTCCCCGGTCGAGCGCGAGCTCGCGCTGGAGATGATCCGTAAGGCCAAGGAGCAGGGCCTCGACCTGACCGGACCCGATGGGCTGCTCAGACAGTTCACCAGGACCGTGCTCGAGACCGCTCTGGACGAGGAGATGACCGAGCGCGTCGGCCGGGCCAGACACGAGAAAAGCGCGGAGGGTAGGGCGTCGAACACGCGCAACGGCACCACCTCGAAGACCGTCGTGGCCGACGCGGTCGGTCCCGTCACCATCGAGGTGCCGCGTGACCGGGACGGCTCGTTCGCGCCCGTCATCGTCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //