Array 1 8298-11472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFY01000200.1 Xanthomonas oryzae pv. oryzae strain IXO151 contig_200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8298 31 100.0 34 ............................... AGTCGCCAGTGAAGTCTCCCAGATGATCCCCCAA 8363 31 100.0 34 ............................... TCAGCCTCAGTGGCAGCAGCCACGTTGACGGATG 8428 31 100.0 35 ............................... CACCCTGTAGCTCGGAAATTGCCTGTCTGACGACT 8494 31 100.0 34 ............................... CTGCACGTATTCAATCAGCGCGCTGTCGGTGCGG 8559 31 100.0 34 ............................... GTAATTGCAGCAGGTAGCAAAACATCAAAGCCAT 8624 31 100.0 36 ............................... TTGACCGTCGCGCCGAAGCTGCGCTGCGCGCGCACC 8691 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 8757 31 100.0 36 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCGC 8824 31 100.0 33 ............................... TCCCAGCAGGCCTTAACCGCATGGTCTTTGCAG 8888 31 100.0 33 ............................... AGAGGTGCTTGTTAGTGCTACGGGGGCGTATGC 8952 31 100.0 35 ............................... TGGGATCAGCGCACGGAATATGGTCGTCTGCGTGC 9018 31 100.0 34 ............................... CTGATTCCACTGCTCGATTGCCTTGAGGGTGTCG 9083 31 100.0 34 ............................... CTCAAGATTGCACAGTATCCAGAGGAGGTGACAA 9148 31 100.0 34 ............................... TGCATCTCCTCTGGACTGCTTCTAAACTCAGCAT 9213 31 100.0 34 ............................... CGTCAATACTGATCTTGCCTGCTATCGTCTCCAA 9278 31 100.0 33 ............................... CCAGGTGAGCGGAAGTCGTTCCTCTGGCTCAAC 9342 31 100.0 35 ............................... CAGCTGATGCTGGTACTTCAGCTGCTGAAGCTTCT 9408 31 100.0 35 ............................... CTGTACGGATGCAGCAGATTCTGGGCGCTTGAAGT 9474 31 100.0 35 ............................... ACATGTTCGTGACTACTTAGGAGATGAACGGGAAA 9540 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCGGTCCAGGG 9606 31 100.0 35 ............................... ATGGCAATGCGCAAAGCACATGGCAACACTGCCAC 9672 31 100.0 34 ............................... AAGAGCCTACGGAGCCGGGGCAGCATCCATTGCA 9737 31 100.0 35 ............................... TTTCAAATGAGCGATATGCACCTGCCCACTGACAG 9803 31 100.0 33 ............................... TTCCCTTGTATGGTGAGGATGGTCAGTTGGCAT 9867 31 100.0 34 ............................... TACAGTTAACAAGTGTGTTGAGGCAGGAGTAAAA 9932 31 100.0 35 ............................... ACCATGTACTATGTAGCCCTTTCCCTTGTGTGTGA 9998 31 100.0 34 ............................... TCATACACCTACCTGCCGTTTGAAAGTGTGTACG 10063 31 100.0 34 ............................... ATGACAACAGGATTGCAAATTTGAAGAAAAGGAC 10128 31 100.0 37 ............................... TAATATGTTGCGGACATAGGGTGGACAACCCTTGTTC 10196 31 100.0 35 ............................... TGTAGGTCCAGGCTCCCTGGCTCTGGCCTTGGTAA 10262 31 100.0 35 ............................... AGGTTACCTTGGCTCGGAGGCACTCAGCAAAGGTG 10328 31 100.0 36 ............................... AGCCAGACAATCAGCAGTATCAGCAGTGCAGACCAC 10395 31 100.0 33 ............................... TCTTCTAACTACATTATGTCGGCGGAGCTATAA 10459 31 100.0 35 ............................... CGGTACTTGTAGATAAACTCCTGCACCCTGAGCAC 10525 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCTGTGCAGGG 10591 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 10657 31 100.0 33 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACC 10721 31 100.0 34 ............................... TTGTGGGACACGGCGGATATGGAGATGTGGGAAA 10786 31 100.0 35 ............................... TCGTAGAGCGTGACAGTGCTGGGAAGGTCTTGAAC 10852 31 100.0 35 ............................... GCATCCACAGCAGGGATGCTTGCTCAACAAAGTGC 10918 31 100.0 34 ............................... GTCGGGTCGACGGACGGTCGTAGCTCACCCACAC 10983 31 100.0 34 ............................... CGGACTCAGTGGTGATCCGGTATAACCGAGTTGC 11048 31 100.0 35 ............................... CTCGCCAACGTGTGGGATATCAGCACCGCGACGGG 11114 31 100.0 35 ............................... CTGACGCGCCAGCCTGCGACGTACGCAACCGTGAC 11180 31 100.0 35 ............................... GCGCTGGCCGCCTTTACCTGGCGACTCCATCACCT 11246 31 100.0 35 ............................... TCGCTAGACTCGCAGGACTACGACAAGGTCGAAGC 11312 31 100.0 34 ............................... GACCGTGTTGCCGTGCGACTCGTAGCCGACCGAC 11377 31 100.0 34 ............................... TGGGGCGTGTTTGCGTTTCCCCCGTCCGCCGGTG 11442 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 49 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACACCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : AAGATCCTGATTAGCCCTGACCTTCAGCTGCAGCACCTCCGCGCTTATCGCTAAACCGGCCCAATGCCAGGCCGCCATGGGGCCCTGGCTGAAAGAACTTCGCACCGGCTCCTCGCGTCAGGAGCGCCAAGATCAGACATCATGGAACACATCGGTAAAACGAAGCTATTTGCAGGACTGCAACAAAAATCCAGCTGAGGGTCAGGGCTAATCAGTCGCCCCTGAAAAACCCCCAGACCGCATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //