Array 1 1866386-1864862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 1866385 32 100.0 35 ................................ ATTCTGATTGTCGTCTACTCTTTCGTGATGAATCG 1866318 32 100.0 37 ................................ TCCTGGGGGGTGTGGCCTACGCTGCGGGAACAGGTAA 1866249 32 100.0 34 ................................ TTGATGAAAAGGAAACGGCTAAAGCCATTGCAAA 1866183 32 100.0 35 ................................ GCTCCTTTGATACCAAAGACCGTATAGCGTTTGGA 1866116 32 100.0 37 ................................ TTACTGTCTACTGCTTTAGTCGCTTATATTTTCGTAG 1866047 32 100.0 34 ................................ CCATTTTTGGTTTTAATTAGGACATTCAAGAGGT 1865981 32 100.0 35 ................................ TGGCTGAGCGTAGATCAACCGTTTCAGGTCTATGC 1865914 32 100.0 34 ................................ CTGCTGGCCAACCTCCGCCCAATACGGCATCAAG 1865848 32 100.0 35 ................................ TTCAAGAACTGGTTAGGAGTGAAGTTAACAGGACC 1865781 32 100.0 35 ................................ CTCCAGATCGGCCAGAAGGCGATACAGGGCTTCAT 1865714 32 100.0 36 ................................ CACTTCGTCATCTGGATACAGGTCTTCATCTTCCAG 1865646 32 100.0 36 ................................ TTACCAGGAACCCTGGAAGAGAAAGAGGCAAAGTTG 1865578 32 100.0 37 ................................ GATTGCAAATGCCCACGCTGCGGCTTTGTGTTTGACC 1865509 32 100.0 37 ................................ ATTTCACGCAGACGAACCTCTTTTACCGATACCTCCC 1865440 32 100.0 34 ................................ TTCCAAGGCGCTACAGTTGATAACTCGGGCTTTA 1865374 32 96.9 37 ...................T............ TGCCCACTCTTGAGATGTTTTTCTCTTGGACTCTAAC 1865305 32 100.0 40 ................................ GAGTGGGTAGCGGGCGAAATGATGACCGAAATAGGTAACA 1865233 32 100.0 36 ................................ TCGAACATGAACACACGGGGCACCTCCCCGTCGACC 1865165 32 100.0 36 ................................ ATCTGGAATCTCAACTTCGATTTCACGTTCATATTT 1865097 32 100.0 36 ................................ ATGACTCATCATCTGCCAATGGGTCATATTTTAGAC 1865029 32 100.0 38 ................................ CGCAATCCAACTACGCCGGGCACTGTTCCGGGATTCTT 1864959 32 100.0 34 ................................ AAACAATCCAGTCGCCCTAACTCAACACACCGGT 1864893 32 81.2 0 ..........G................TGCTA | ========== ====== ====== ====== ================================ ======================================== ================== 23 32 99.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CGTAGCTTTGCTGACAGCCGCAAGCAGGCTTTCGATTGTCGCTTGGATACGACGGATGGCCTCTTTCGCTTCACACTTCAAGAGCTGCCGCGTGAGACGGCAGAGACGATTGTACGATATCGCGAAGAGCTGAACGTATTTCGTTTTGTAACGCCGGAGGAACAATCCATTGTGAAGCATTGGTACTACGTTACCCCGGAAAGCGTAAAATATAATGATCAGACAGGTGAGCTTACGCTCGAAGCTGGTTCTGAGATTGAATACCATCCCGAGGAGTATTGGGGAGATTAATCCTTTTTTTATAGGGCTGTCCCGGTAAGGTGCGAATGTGAAGCTCACATAAAAACTCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAAGGATTGAGAGGGGTGTTGGCGATAAAATTCAATGCTTAATCCATCCCTTTTCGGCATCGTTTATTACGAGAATGCGTGAAATTGATACCATTAGGGTATGGTTTACCCCATTTTCGCT # Right flank : CAGGAGGTGTTATTTTGGATTTATTTCTAGTTGTACTTAATATTTTAGTTATCCTTATTTCTATTGCTGGTGGGGTGCTTTTAATCGGTTTATTGTACAGGGGACATACGCTGCTAGGTTTACTTATTGCTGAGAAAAAGAACAAGAAAACAATACTGAGAAAAAAATATAGAAAACAACAATCTCCGTCGATATTTAAGGTTAGTGGAGATTGTTTTACGTTTCATTATTTGTGGCATAGTAAGAGTTCTTCATCGGTGATACCCTGCTGGCAAAGCCGGTGGGGTGTTTTTTTGTTTATATTACTCCTATAGACTATCCTTCAAGCCTTCATGTAAACTATGCCAAAAATTTGTCATGGGGATTAGTTGAATAATATATTGACATATGGTTAATTTTGGAGAAGAATAAGGTATGTTTTTTAAAATTATGGAATTTTTATGTGAAGGGTGGTTATGACTTGAAGCATACACCTATGATTACTACGGAGTTTGAAGCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2714536-2713495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 2714535 31 100.0 35 ............................... CATCCAGCGAGCCGCCGGACCGAATCACAAGCCCG 2714469 31 100.0 35 ............................... TGGATACCGCAAAGGGTTGGCATGACGGACGATGG 2714403 31 100.0 35 ............................... GTGAAGATGTAAACAAATCCCTTCAAAGTAACACG 2714337 31 100.0 36 ............................... TTTTCGTTGATTTCGAACCACCCCTTGCTTGCGCCG 2714270 31 100.0 35 ............................... GAGGACGTCAAACTCGCCGGCACGCGCTGGACCGG 2714204 31 100.0 39 ............................... ATTAGAATGGATGATGGCGGTCCTCTTGACCCGGATGGG 2714134 31 100.0 35 ............................... CTCCTCAGGCTCCAGTTCCCAAGACTGAACCAGTG 2714068 31 100.0 37 ............................... TATCAAGCCACGCCTTTACTCCCTTAAACTCTTCAAG 2714000 31 100.0 35 ............................... TGGTATTGTACCTTGGATTAAACAGCTTAACGGTG 2713934 31 100.0 39 ............................... TGCACGTAAGGACGTAGTTGCAAAGATCAACTTAGAGAG 2713864 31 100.0 37 ............................... GTTTACAGCCGCATGATACTGTGTTGCCGTTGGTAAG 2713796 31 100.0 37 ............................... TAACGGCTTTGAGGGTGTGGGGAGTATCGAAAAGAAG 2713728 31 100.0 38 ............................... TTACGCCGGCTACGCGGTGTCAACGTGAGTCCTGTACG 2713659 31 100.0 37 ............................... ACCGATAACATATCGTTTATGCTGGAGTATTTCTGTG 2713591 31 100.0 35 ............................... CAGAAAGCTGCAATGGGCTGGAACGATGATTTAAG 2713525 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 16 31 100.0 36 TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Left flank : CTACCTCTGCTGCAGCCTGCTACATCCTCAACAGGCAAAGCAGTAAAGAAAATGTAGCTGTCATGATGAAAAATGGATGATATGAGGAAAATCGTATTGAAGGCATGGTACAATGAAACAGGATAGGATTATTTATCCCTATATTAATGTGTTTAGGATTTGACCCCATTTCGAAGTTTAAAGTATAAACTCGAGTAGTTGATAGACCAAAAAGAAGACAACTTGCGCTTTTACAACTTAGGAGATAACTACAAAAAGAAAGTAGAGCATATAGGGGATAAGGAAACTTACGATCTGGAAAGTGCACTGAGTTTATATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCAACCGAATCAGTTATCTTCAGTAAAAGTCAATGGTTGATCCAAGCCTTTTTAGCATCAGTTTTTGCGACAATGTGAGAAATTGATATCATTAGGGTATGAATTACTGTATTTTCGCTG # Right flank : AATTCAATCGTGCTTACAGGAAGGATCACGGGAAATACCTTATCCAATCAGGATGGAATTCCTGGAGACGATATTGGAAAAATTACCAAAAAAATTCCAAAAAGCCTTACGTGACATGAAGTTAAGGCTCAGTAAAAAAGGCCTGCTAACTTTTAGCAGGTCTTAAGATATATTGGAGTTATCACTTTTTTTGTTACCAATTTGGTCAATAAACCTTAAAATATTGCCAATGCTATTCCCCCTGCGCCCAACCAGTAGTCAGATGAAACCCATCGGTGCTTATTAGAAATTGTTAGTTAGCAATTGGTAACATCATCTATAAAGCTAACAAACTCTATAATGCCAAATATGATTGCATTAATGCCTATCCAAACCAATAATAACAAGAATCGAGCATGGTAAAGAGGTGTCAATCTTATTTTCGTATAAGAGAGCTTTAAAAAATACAATTTTTTATCCCTTCATATAACTAAAATTAGATTATTTCAATCCAAATTTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3717410-3717965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3717410 30 100.0 36 .............................. GTTGCTAATATTATAGCATAAGTATGGAGGAAAGTA 3717476 30 100.0 36 .............................. CAATGTTGTCGTTTTGGCTATTTAACAAGATGAAAA 3717542 30 100.0 35 .............................. AACTGTTACAGTACTTTGTTACTCCGAAGGGCTAC 3717607 30 96.7 36 ...........G.................. CATGTACATACACTTTCGATGGTATGAAGCCCATAG 3717673 30 100.0 36 .............................. AAGCCAGAGAGGGCCAGGTCAGCTCCGCTTTCCTCC 3717739 30 100.0 36 .............................. AGTGCTGGTATATATCCAGCCAATGCCTCGCCAGTA 3717805 30 100.0 36 .............................. TCTTTGGCATAGCCATGAACGGCAGACTCCGTTGGG 3717871 30 100.0 35 .............................. GAGCTGTCGCTGCCTCCGCTGATCGTAAACTGTAC 3717936 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 99.3 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : CATCGCCACCGCCCCCGGATTTCTTGAATAAAGCCTATGATCAGGGTAGAAATCCAGGGAAGTGATGCTTCCGAAGCGAGCTTTCCTACGGAAAGCTTTTAAAGCGATCGCTTCGCTTGTATAGCACTATTCCGCCTACTCCGCTTATTTGTTCATTTTCGAGTTCGGATTGTATAGCAAATATATTTACCATTATACCTTCAAGAAATCCATTACAATACAGGCTAAAGGTCTATTTTGAGGACGGAATCCAATTTTAATGATAATAAAATCATTGTCCTTGAAGCTACTTGAAATTTAAAAAAATGAGACGTGAAGGGTTCACTTTTTCCCAACCTCTAAATGGAATGATACAGGGAATCACTTAGAGCCACAAGCCATTTAGGCGTTTTTTTCTGAAATTTAGAATAATGACTCGAGGTTGGGAAAAAATTGCGAAACCCTTGCGGCTGTAGTAAAATATGCTCATTGTTAAAAATGGAACACTTGATTCTACTAGC # Right flank : CACCCCCCTTTTGAACACTACACGATAATTGCTAGCCCCAATTATACTCCTTATTTTTATAATCCACTTAAATACGTTAATAATCGACAAAGATTCGGGAATTTTGATTGATATTTAGGAAGAGAACATATAAAATTGGATTAAAATGTAACGAATGAGGGGTTGCGTGTGAAAGCGTTTGACTTTGATGAAGTAACAGACCTTGATTCCATTGTCGGAATGCTAAAAATGGCTTTTTCGCTTGAGGAATGGGAGCAAATGATTCAAATTGCAGACCAACTGCATACTCAAGCTCATCGGGTATACGAACAACAGCAGTTGGAACTTACAAAAGGTGGACAGCCTAGAACTTTACATATAAAACGACCACTTGTATACTACTTAGGATTTAGTCAATTAACCAAAGGTATAGCTTTTCAAAAACAAGGTAAGTATGAGTCCTCTAGAGAGTGTGTTGAAAAGTACGCTGAACTGGGTTGGGTAGAAGGCCTGAATGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 3719762-3720251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3719762 30 100.0 36 .............................. ATGCCTTTCTGTGAGACTGGCATCACCTGTTCGTTG 3719828 30 100.0 36 .............................. GGTTGCGAAAACGGAAGAAAACAGGGTATTTTCTTC 3719894 30 100.0 36 .............................. CATATACAGTCCCACATGCCGCCGCTTTGCCTACCT 3719960 30 100.0 35 .............................. TTTATGCGTGGATCAGGAAAGAATGTCGCCAGATC 3720025 30 100.0 36 .............................. AGGAAGTTCGAGTGCTCAACCGAGTCAGGGTACAAC 3720091 30 100.0 36 .............................. GTTGCAGAACAGCATCCACCAATGAACCGTCATGTG 3720157 30 100.0 35 .............................. TAGTTGATCGTCCTAGCTTCTCTGGCGGCTTCATT 3720222 30 76.7 0 ...........G.....A.....C.C.GTC | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.1 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : GTAAATATCGTGGATATTCCAAATCAATCAATACTGCCTATTATTTTAAAATCGGTGTTGACTTCTTTTTTGGTAAGTTTGGTATTGGGGTCAATTACTAATTGGCTATTCAGAAAGAAGTAGCTCACAGCCATTAGTAAGAATATATCCGAACAAAAAGAAAAGAAACATCGGATGTTACGGTCATAGTCTAGTTTTCAGTATTTTAAAACTAGAATTATAAATTTAAATACACCAAGTGTTTCATTCATTATGAGCAATTTTTTCTGATGCATTTTACATTATACTCTTAGGTAAGCGATCTCGACTAGACCAAAGGTCTATGTTTTTCCCAACCTTATAACTGCTAGAGAGAGGAAATTCCTTAGAACCACAGGGGATATAGCTATTTTTCTTAAAACTTGGCAAGAAGCGACCTACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAACCACATTGCGATTTTGGAAAGCTTGATTTTACTAGC # Right flank : CCTAAGCAGCGAAGCGGGCAGAATTGTTCTGGAGAAGCGTAAGCGTTTGCCTTTATCCCCGGATTTTAACCCTTGATGGGTTTATACAATCCATAAAATCCGGAGATAACAGCAATCGGAAGAACAATCTGCACGTGTAGCGGTCTAAGTACCGTCGAACCTTATTTTAAAATATAGAAATATAACGACAAAATATTTACAAATCATGGAGCAAGGTCTATACTCTATATCAAGTCAGGAGGTGAATATATTGTACTTTGAAATTCATGTAACAACGTTAATTAAACAATTTTCTCATCATCTGGAGATACCGGAGCGTATCGGAGCCTGGATTGGTCGGGCGGGGCTGAATGACGAAACGTTAAAGCAGACGCACTATGACAAGGACTACAAGCACTATACATTCGGATCGCCTTTTCCGCGTGAAAAGGCGGGGGTATACAAGCAAGGTCGTGTATACGTCATTACGATCCGTAGTTCCATAGAGATTACGTTACGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 5 3729897-3730384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3729897 30 100.0 35 .............................. AGGTATATTTCCATTCGTTCGAGGCCGCCGTTTGC 3729962 30 100.0 35 .............................. AGTGCTGAAAGATTTGAAAGCAAATGGTAAAGAGC 3730027 30 100.0 34 .............................. CGGAATTAAGCGGGGAGGCTGCAATGCTAATCCG 3730091 30 100.0 36 .............................. GCAAGTGGCAGGAAAGACAATTGAGGAAAGACTCAC 3730157 30 100.0 36 .............................. TGAATGAAGCCCAGGCCAGCCAGCACCTCCAGCGAT 3730223 30 100.0 36 .............................. TTTGGATAGTGTAACTCAGCGTTTAGACGTTCGAAA 3730289 30 100.0 37 .............................. TAATGTTTATGGGGGAACCGAAGATTTTATTAAATCT 3730356 29 76.7 0 ..................-..C..CC.GGG | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.1 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : CCTTTTGTTCCCTTTTTGGAAAAGGAAAAGAGGTAGAAGGATATGGCGAAAAATTATAACTATGTCATTCTGGTGTATGATATCGGAGAAAAACGAGTGGGCAAGGTATTTAAAATATGTAAAAAGTATCTCGTTCATTTCCAGAAATCCGTATTTCGAGGTGAAATTACCCCCGCTAATTTAATTCAGCTACGCGCTGAGTTAAAAAAAGTTATTGATGAAGGGACCGACTTTGTTGCCGTTTTTAAGATGACAGGTGATTATGTTTTCGACGAGGAAATCATCGGTGTCCGTTTGAATGATTCGGAGTCCTTATTACTGTAATTTTCCCAACCGCCTTAATGGACAGATAGCTGGTTCTTCTTACTGCCCCAAGGGTTATCGAGGATTTTCTGTGCAATTAGCGTCACCCCTTTTCCGGTTGGGGAAAAATTGCGAAACCCTTGGGGCTGTTGTAAACTAGGCGCATTACTGAAATTAAAAAGCTTGATTTTACTAGC # Right flank : GTTTAAAGTCTTCTAACCCCCAGCTATATTTGCCAACAGACAATAAGAAGAGTCATACTACCAAACCGCGTAAGCAGCGTAAGGTAAAGGAAGAAGTTACTTTAAGCAAAATAAGAGAATTAATGCTTCAACGTCCAGGTATAAAACAAAAAGAGCTCGCTGAAATTTTGGGAATATCTCAAAGTCGGGTTTCTCAGCTCAAAAATAAATTGAACTGAACTATCAATTTTTCCTTTATCTTTGGGTAGTACCAGCGAAGCTGTCACCACCCGCACACCTAGAAAAGCTACGGGATTCATGAGATCATATGCGTAGCTGAAAGTTACGCGCGCACGTAAGTAGATGCGAGTTTAATTTTTCGACCGCGGCCGAAACGGGCAGAATAGCGCAATTCTATTCTCAGGCATAGAACTTGTGCCCATAATTGACAAGAACTTGTACCCATTTCCTGCAAAATCTTTTTGGTGGCAGAGTTTAAACAAAAAAGCATCATCTTTAAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 6 4517735-4519712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4517735 32 100.0 35 ................................ ATCCGAGCTGCCAGAGGTACTGGGCTTGTGTGACC 4517802 32 100.0 34 ................................ CTTGAAACCCTGCTCGATTCGCTCGTCGTACACT 4517868 32 100.0 36 ................................ CTGTGAACAGTAATCCTGCTGTACAGATGTTTATTG 4517936 32 100.0 36 ................................ TCTCTCAATCTCGTCCTGATCTGCGTCACCGTCAGT 4518004 32 100.0 37 ................................ GACATTTCTGTTCGCAAGGAAAGTATGCCAAAGGGTC 4518073 32 100.0 35 ................................ AACTACGACCAGTTCATTGCCATGAAGAAATTTAG 4518140 32 100.0 37 ................................ AGCCTTGAAATGCCCGGTGCAAAGCTGGGAGAACGAT 4518209 32 100.0 34 ................................ ATATAGACCCTTGGAATCAGTTATCGAACGGAAT 4518275 32 100.0 34 ................................ ATATAGACCCTTGGAATCAGTTATCGAACGGAAT 4518341 32 100.0 33 ................................ ATCAATCGAGTAGGATTCAACCAGGTCACTGTA 4518406 32 100.0 35 ................................ ACTAATGTTTAAAGCGAAGGCTTATAGTGAACTTC 4518473 32 100.0 35 ................................ CATACAACACAAAAATAATTGTACGGGACTGTATT 4518540 32 100.0 38 ................................ AGCTGCAGCAGGCACGCTCTCACAGAAGCATCAGGTAC 4518610 32 100.0 36 ................................ CGTTTCCTTTGTTACGCGAGTATAGCGGTTGAGTTC 4518678 32 100.0 35 ................................ CAATGACTAACGGCAAAGAAGCATCTTGTTCAGGG 4518745 32 100.0 34 ................................ TGCGTCGCCGTCAATATCCTCTTCAGATTCAGCT 4518811 32 100.0 33 ................................ CTCAACCACCTTAAAAAACTCCCCGCGCTTATG 4518876 32 100.0 36 ................................ CCTCCTACTCTTGCTGTTTTTTGGGTATTCACTAAT 4518944 32 100.0 33 ................................ ATCTCGATCAAACCCCTTCTTCGTCGGGACGCC 4519009 32 100.0 35 ................................ AGCCAGTTGAATATAATCCAACTAACGATCATCTA 4519076 32 100.0 33 ................................ TGGAGCAATTACGCAAGGGAGGCGGAGGAAGCG 4519141 32 100.0 37 ................................ AATTTCCATTTGTATACGATGTAATCAAAATGAATCT 4519210 32 100.0 37 ................................ AGCTCGGGCCACTTGGAAACCTCATAGAGCGCTTGGC 4519279 32 100.0 34 ................................ TCACAATGAAGCAAGAAGAATCCTTTTTTGTTAT 4519345 32 100.0 34 ................................ GTTGCGGGAGGATGCCGAAAACGCTGGTATTGAC 4519411 32 100.0 35 ................................ TGGAAGAATTCCGGACTTTGATGACGGTGACGATG 4519478 32 100.0 37 ................................ CTGTTCCGCCTTTATCTGAAGCGAGCGTCGTACCAAA 4519547 32 100.0 33 ................................ TTCGAACTTGACCGCGTCGGTAAGGCGGTTAAG 4519612 32 100.0 37 ................................ TGCTATCGCAGTAATGTCTGTCAGTGTCGCTAGTCTC 4519681 32 93.8 0 ........................G..A.... | ========== ====== ====== ====== ================================ ====================================== ================== 30 32 99.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ACAACGGAGAAAGCGGAAAGGTTAAAGCAGATTACCATCCCTGTAAAGTTTCCCGAAGGAGGGCAGCCGTTGGCTAATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTAGTCACCTTTTTGGCCTCCGATCATTCGCGTCACATTACTGGCGCACAAATTGTGATTGATGGGGCGGAATCCTTATTGTTTTAGCGCTGATGGATTTTTGGTGATAAAAAAATGATGAATGGTGTTTGAGTGTATGGTCTTGGTTATGATGCTTATTTATGGTATATGTATAAAGGAAGATAAAGCGAATTTTCTCTCTCTATTGTTTGGTGCGAATGTGAAGCTCACATAAAATCCCTAGATCCTTCGCACCTCGAAACTTGTCGAAAAAGAACCAAATCAGCCTTCATTGATTAAAGTCAATCCTAGATTCAAGCTTTTTTGGTATCGTTTTTATGAAAATGTACAGAATTGATATCTTTTCTGGATCAATTGGGTACATTTTCGCT # Right flank : TCGGGGCGCGGGTTGCATGTAACTGGCAATCCATGTCCACTCTACATGAAGATGTATTTTTAAAACTCATTTTGTAAGTGTAATTCGAACTTAAAATATTTAATTTTGGTGTATGTCAAGAATCCTCAGAGAAAGAGCTCTGGGGATTTTTTTATGAGTGCTTGATTCGCTCAAAATATTGAATTTTTCTCTAAAATAATTTGTTTGGGAGGAAAATGCAAATCAATGTCGAAAAAAGTAAATAAGTCTTAGTTCAAGAGACTCATTCAGTGGAATGTATAGGCTCATATAGGCCGAAATTAAAGGAGTGAAAAAATGGAGTATATCGCCCACATACGGGAAAGTGACCAAGTGATTCAGACGGTTGCTGAACATCTATTGGAAACTCGACAATTAGCAGAGGCCTTTGGTGATAAAATAGGCATACGACATATTACCGGACTCGCTGGTATGCTGCATGACTTGGGGAAATACACAGAAGAATTCCAGCATTACATACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 4528407-4529174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4528407 32 100.0 37 ................................ CATGGCGCTCTGGTCATTGGTCGTTGTCATCGCTGCC 4528476 32 100.0 34 ................................ TTTGTCGAACTCGGAAGTTGTTTCTTCCAATTGT 4528542 32 100.0 33 ................................ TGACAAAAACGCCGGAGTCGCCTCCCGGACGCC 4528607 32 100.0 35 ................................ TACTTCCTCATAACGTATAGCCGCAAAACAACGTA 4528674 32 100.0 34 ................................ ACCGCATACAGTGCATATCTTATGCTGCTGCATA 4528740 32 100.0 36 ................................ TCACCTCCCTCCGTGATATTTCTGTAGTCTGCGCTC 4528808 32 100.0 37 ................................ CAAAGAATACGGGACAACTCACTTTTATCCCGATCAT 4528877 32 100.0 37 ................................ CTCCTCAATGTATGTAACCCCCTATCGCTCAGGTAGG 4528946 32 100.0 35 ................................ AAGTGCGATGCGCTCGTTGAACCACGTCGTTTTAA 4529013 32 100.0 33 ................................ CTCGCATGACCGCCGACTGTCGCTCCCGGCGAG 4529078 32 100.0 33 ................................ CTGTCTATCACTTCGAAATTATTAATAGTCGTT 4529143 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATATTGATTACTTATGATGTAAGTACAGTAGACAGAGAAGGCAGAAAGAGATTGGCAAAGGTTGCGAAAAAGTGTGTTGATCACGGACAAAGGGTACAAAACTCCGTATTTGAATGTATTTTGGATTCGGCCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAGTTGATAGACAAAAAGGAAGACAGCCTGCGTTTCTACAACTTAGGCGATAACTACAAAAAGAAAGTAGAGCATATAGGGACCAAAGAGGCTTACGATATGGAGAGTCTACTTATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAAATTGTCGAAAATCAATTGAATCAATTACCTTTAGTAAAAGTCAATGGTTGATTCAAGCTTTTTTGGCATCAGTTTTTGCGACAATGTGTGGAATTGATATCATAAGGGTATGAATTACTGCATTTTCGCT # Right flank : TCCCTCAGTTTTTTTTATTAGCTGGCTTTTTAGGTGAGTGGATCGGTTACTCTTAGTTGGACAGAAAAAATAAGGGCTAGTAGAATGAAAACATTAGAATTAGGAGCGGATCTACTATGCCAAGACAAAGACGTACATTTACAGCAGATTTTAAGAAACAAATGGTTCAGTTATACGACAACGGAAAGCCGAGAGCAGCCATTGCGAGAGAGTATGAGCTTAGCCCATCGGCTCTAGATCGCTGGATCAAGCAGGCTCAAACCTCAGGTTCATTCGCTGAAAAAGATAACCGAACTGCAGAAGAGAATGAACTCCTTGCGCTCCGTAAAGAAAATGAGCGACTCAAGATAGAGAATGATATTTTAAAGCAAGCCGCGCTGATCATGGGACGAAAGTAAAAATCATTAAGCAAAACAGTGATAAATACTCGGTATCAGCATTGTGTGAAGTCCTGCAAATCGCTAGAAGCACGTTCTACTATGAAGCGAAAGAAAAAGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 4530428-4531075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4530428 32 100.0 34 ................................ ATCATCCCACTGGCCGGACACCTTGTTAAGCGCC 4530494 32 100.0 38 ................................ TCTCTCGCTTTGGTCGAGATGTGAAAAAGGTCGGCCAG 4530564 32 100.0 35 ................................ TTACAGTAATGTAAGTCGATAACCCAGTGAACGCT 4530631 32 100.0 37 ................................ CAGACGCGGCAACATACGAGTTCGCGAATGTACTTTC 4530700 32 100.0 37 ................................ TGTTCCAGATAATAAACATCTAACCTGGTACGTTTGG 4530769 32 100.0 38 ................................ TAGCGGGCATTGTTATCCTGGGGATACTCCAGATCATC 4530839 32 100.0 35 ................................ CATCTTCTTAACGTAGGCATCACCTTTACCCAGCT 4530906 32 100.0 38 ................................ ATCTTATATCAGGATGGGAAAAGAATAACCAAGCTCGG 4530976 32 100.0 36 ................................ ATTAGCTCGTCCGGTGGCGTTGGGCTGTGGATAATT 4531044 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 100.0 37 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CGTTTCGTAGTCAGCGATCTAACTTATGTGAAAGTTCAGCACAAGTGGCACTACATTTGCGTACTGATCGACTTATTTAATCGTGAAATCATTGGCCATAGTGCAGGTCCCAACAAAGATGCTGCTCTGATTTCCCGTGCCTTTGCCACGGTAGAGGGCGATTTGAGCGACATTCAGTGGTTTCATACGGATCGTGGAAGCGAATTTAGGAACCAAACCATGGACGAACTGCTAGAGACCTTTGACATTGGCCGTTCCCTAAGTATGAAAGGCTGTCCCTACGACAATGCCGTGGCCGAAGCCACCTACAAAGTGATGAAAACAGAATTTGTAAACCAAATGAATTTCCAGAGTCTTCATCATCTAAAACTAGAATTATATGATTATGTGAACTGGTTCAACAAGCATCGTATTCACGGCACATTAAGATACATGACGCCAGTCCAGTACAAAGCTGCAGCCCTTAAAAAAGTTGTCTGATTTACTGTTGACAGTCCAGA # Right flank : TCATAGCTTTTCGTCCTCCAGGATACCCAATGATCTGGTCGCACTCTATATGAGTTCAAATTTGTCCAGCATGTGGAAGATTTGAAGGCCTTTAAGTCGCACTCCATGTGACAAATTGACGATGCGGCAGGATTCACGGTTGGTCGTTACGGCATATAGTTTTGCTCGGCTGGTTAGGCGGTGGAATAAGGCAAGGATATGAGACCGTACAGAGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTACGGTGGTTCTTTTTTTTCACTCGTCTTGTATGCCATCATTATAGGGGGAGGCGATGAAGGATGTTCCAGGATTTCAAGCTCGTCAGTGACCGTCCGGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGTGCTTCAGGCGGATCAGAAGCTGCCCTCCACACGAGAAATGAGCGTTCTGCTTAAGGTGAGCCGAAATACAGTCATTGCAGCCTATGAAGGTTTGGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 4537463-4539175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 4537463 32 100.0 33 ................................ AAACCTTTATACGATTTTATACAATCGAATGAA 4537528 32 100.0 37 ................................ GTATGTGGGTGTGCACGGCTATGAGATGGGAGCCATC 4537597 32 100.0 38 ................................ ACGAAACGGATCATCGGCTAACGACCTACAAATATCGC 4537667 32 100.0 34 ................................ TTAAATCAACCTCTCCTGAGCTGAGCATGTCAGG 4537733 32 100.0 36 ................................ TTAGTTTAATTTAAATTTAATCTAAGAAATCATTTC 4537801 32 100.0 31 ................................ ATTTCGGCGTAACCGCAGGGCGTAAATTCTC 4537864 32 100.0 35 ................................ TCCCCATCGCTATACTGCCAAAAGTCCCAGCTTGT 4537931 32 100.0 36 ................................ TTCAAGGAAGTCGCTGTCCGAGATGCTTTCATTCAA 4537999 32 100.0 36 ................................ AATCCTCACCTCGCTTAGTTCTACCCTCTCAATCAG 4538067 32 100.0 36 ................................ CTCTCCCTTACCGTCCTTAGCCTTCCGATCGTTTTC 4538135 32 100.0 34 ................................ TGATACCAACTTGCATGTAACTGCCGCCAAGCAA 4538201 32 100.0 33 ................................ ATGTATCTCTAAAAATTTGCACTTTTTTGATAT 4538266 32 100.0 33 ................................ ATGAGTGCTATCAGCATAATCATGCCAAGCGCA 4538331 32 100.0 35 ................................ TGGATTGCTGACCATCGCGGAGGTACGCAAGCAAC 4538398 32 100.0 36 ................................ CTGCTCCCATGCTGAAGCTCAGTAAGCCCTTTTGCA 4538466 32 100.0 34 ................................ TACTTCCCACACTGCGGACATTGACCCCGAATAA 4538532 32 100.0 33 ................................ TTTTACGAGATGCCGGAAATACCTGAGTTTACT 4538597 32 100.0 37 ................................ CCATATGTTATCCGGATGCTGTGGCAGCATCGAGCAA 4538666 32 100.0 34 ................................ AAATTCTGGTTGGTTATATTTTGTGCTGTCCCAT 4538732 32 100.0 36 ................................ AAACGGGTGTCCCAGTGTACGACGAGCGAATCGAGC 4538800 32 100.0 36 ................................ TGACCATGAATCCGGTCAATACCATGACATATGCAG 4538868 32 100.0 36 ................................ ACCACGCCAGATGCAGGCGATAGGATACCTGGAACA 4538936 32 100.0 36 ................................ AACTGCTGCAGGTGCATTAGCAGTTAAACGGACGAA 4539004 32 100.0 40 ................................ TCTGCACCGGAATAATTAAGAGAATATTTAACGGAGTCGC 4539076 32 100.0 36 ................................ TCCAAATATAACACAAAAGTTGGGAGGAAAGACTAA 4539144 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 26 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATAATTGGAGTTTCCAGCAGCCAAGTACCCAGAAACAGTCGCACTCTATATGAGTGCGTGGATTGAAATATTAACACTGACTCCTTCATGCTCGTCTTCAGCGTCGCACTCTATATGAGTGCGTGGATTGAAATTATTCCTATTGTGGTATGGCGACAACTTGCAGAGTCGTCGCACTCTATATGAGTACGTGGATTGAAATTTTTGGCAATCACAAGTCACATTTTATAATCGGCCTGTCGTACTCTGTATGGAGTGTGTGGATTGGAAGACAGCCTGTGTTTTTATGGAAAGCTTACTTATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCAGGTTCTTCGCACCTCGAAAAATGTCGAAAAATATTAAATTTGCTATTTATCCGTAAAAGTCAATAGCTGATCCAAGCTTATTTGGAATCATTTTTTGCGATTATGTTGTGGGATTGATATCATTAGGGTATGAATTGCTGCATTTTCGCT # Right flank : TTGACTATCAGATCCCGTAGACTTACCGTCCATAGGGTTATTTTACGCTTTGGGATATAAGATGAGTGCTATGGGTATCTATGCAATTTTGGTAGGAATTGTGACTGGAGAAATAATCAACTTCGTATTATCAAAGCGAGAGAAATGAACTTATGCATCCCTTGATTGATCAAAATCAGGGGATTTTTCATTAAATTAAAAAGGTCATAGAATTACTACCTGCAACCTCTACATCATTTACTGGTGGTAATGTATATGGAGAAATGAAATAGTCATGTCAACATTGTGAAATCTTTTATTTAGGCAATCCAATTCTACTTTTGCTACTCGTTCCACAATCTCTCCTTATGTGTGAGTTATGCAATTTATTTATTACAAACATTAGTTGCATAATATATTGACAGATGGTTAATTTTGGAGAAGAATAAAGTATGTTTTTTAAAATAATGGGATTTTTATGTGAAGGGTGGTTATGACTTGAAGCATACACCTACGATTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 5029161-5028930 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045298.1 Paenibacillus brasilensis strain KACC 13842 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5029160 32 100.0 34 ................................ GGCACCAATTTCGGCACCAGTTTTATAGAACATA 5029094 32 100.0 35 ................................ AGCTCCAACATGCGCGGCATCCGCCGGTGAATAGA 5029027 32 100.0 34 ................................ GCTTTCCAAAACTAGCTTTGTGGTATAATCGTCT 5028961 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACTCTATATGAGTGTGTGGATTGAAAC # Left flank : AGCCATCGGGCGTTCGCGCGGAGGATTAACCACCAAAATTCATGCGATGGTGGATGCGCTTGGCTATCCGCTGCGTTTCGAATTGACGCCAGGACAAGACCACGATTCGGTCACGGGCTATCGCCTTCTTCATGGACTGGACGTTTGCCCGGGAGAAGTGTTAGCGGATCGCGCCTACGATACCAATGCGATTTTAGAGCTTTTGCAAAGCCGATCCATTACTCCGGTGATCCCATGCAAACGCAATCGGCGGGTAAAGCGTCCGTTAGATTCGGAGACGTATAAAGAGCGACACTTAGTTGAATGCTTTTTCAACAAAGTTAAAAACTATCGACGCCTGGCTACTCGCTATGAAAAAACAGCAAACATGTTCATGGCTTTTTTGACGCTACTTTCTATTCGTTTATGGCTTAAATAGGTTTGCGTACAGGCCCTAGTTACCATATTTACTGGTGTACGCTACAATAGAGATAAAGGCACTTGATACGTAGTTTTTTGCT # Right flank : ATGAAATTCGTGCGCCAGTAAAAAATCAAACTGATTTTATGCCCCTTCAATTAAATTGTGTGAATCTGGAGTTTTAGCCTTCTTGAAATTGAAGCCAATTAACGTCGTGCTTCCATCCTGTGAAGGTTGAGTCTGCGTTTTATTTAATCCACAAAGGTAAATGTGATACTTATCAGGTACTATCTCACAGCAACACACAGCAGTCGAAATAGGAGCCCGGTTGAATTTTAGGAGACGGTTTCCGCTTCTGGTACTCCATCCAAAACATTAGGAACATCTAAACCAATGCCAGTGTGTACTTGTTGGTTCCGAAAGTTGATTGTGCACTCGGATTTGTACATAATCGCCAGGATGAACTATGATTGTGGGTCCTGGAGAGCTCCCGTTATAACCCAAAGCATTTATGAATGAACCAGGTAACAGTTCTTGTTTTACATGCTCGGCTACAAGTTCAAAATATTTGACTCCGTTTCTTTCGGAAAACGACAAGTTTTGTAAAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //