Array 1 201894-206193 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXGJ01000003.1 Bifidobacterium callimiconis strain 2028B Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 201894 36 75.0 107 TA..............G....GA.AC.C.C...... ATGCCGAAATCCATTCGAATACAGCATACATAAACGTTACTCAATGAAGCTCCGGAGCGGACCCCGGAGATAGTACGACCGATAAGCGCATCAGGATCAGGGAGCTT 202037 35 94.4 37 ....................-.A............. CGGACAGCAGCTGGGTCTCCTCGAGCAGCTGGAGATT 202109 36 91.7 35 .....................CA..A.......... GCGATCACGTCGTCGGCGTCCACACCGTAGATGTT 202180 36 100.0 35 .................................... CCTCCCATCCCCCGCAGGGTGGGCAACCGTCTCGT 202251 36 97.2 37 ...........T........................ GTGAGATTTGATCTTGAGTGCGTTGCATCCAATGGAT 202324 36 100.0 37 .................................... CGGCGTTCAGCATCGAAGACGCCGTCAGACTGGACCC 202397 36 100.0 37 .................................... CGAAATCCGAGTCCTCGACCTGTTCGAATCCCTCCGG 202470 36 100.0 37 .................................... TACGCCGCCTAGCCTAGGCCACGTGATCCTTATATAT 202543 36 100.0 36 .................................... ACGGAACCATCACCGGCGTCGGTGAACGAGATTCCG 202615 36 100.0 35 .................................... CACACGGTTGGTTGGTCAACCATGTCGGACGTCGC 202686 36 100.0 37 .................................... CACGCGCTGCTGCTGCACAACCGGCTTAGGCTGAGGC 202759 36 100.0 35 .................................... GATTTGCCCGAGCCTCGCCCACCCTCGTAGCAGAA 202830 36 100.0 40 .................................... ACCACCAAAACAAACAATGGTCTCTATTGGAGAGTCTCAT 202906 36 100.0 35 .................................... GGCTGGCCTTTGCGCCGCGAGCGTTTGTGGCATTC 202977 36 100.0 37 .................................... CTTATGCAAGCCCGTTCGTAACCCACAGGGCGATCAG 203050 36 100.0 36 .................................... CAGGTTCGCGTTGAACTGGTTCCACACCTGCAGCAC 203122 36 100.0 35 .................................... AGGCGGTTGTCTCCCCCACCAGTGTTGTTTGGGTA 203193 36 100.0 35 .................................... ACGCGCGTGGGCGAGGAAGACGACCACATCGTGCC 203264 36 100.0 38 .................................... TGCATGGCGCCGAAATCGTAGGGGAATTTCATACCGCC 203338 36 100.0 36 .................................... TTGGGTCTCTCGGTGATCTAGTCGGAGGATTGTTCG 203410 36 100.0 35 .................................... CCTAGCCCATGGCCACGCCGCCTAGTCTGCGCCAC 203481 36 100.0 37 .................................... AATGGTGTCTCGCAGATCATCCAACCGTTCATCCGTC 203554 36 97.2 40 T................................... CTGCATTGCCAATAATTGTGATCTGGCGTGAGAGTTGAGC 203630 36 100.0 37 .................................... GATAGTCGGGGAACTCACGTTGATCTTCCAGCACGTT 203703 36 100.0 36 .................................... CAGGGTGACCATGGCCATCGACGGCGAGGAAGGCGA 203775 36 100.0 34 .................................... CTGAAGGCCACCGGCGTGCAACCGCAGCTCTGGA 203845 36 100.0 35 .................................... TGCCCGGCCCCGCACAGGACGCCATACGCAAGGTC 203916 36 100.0 35 .................................... GCCTCATTCGCCGCACCATGCACACCACGTTAAAC 203987 36 100.0 36 .................................... AGTTGCTTCAGCGTGCGAATGACGGTGACCTTCGAC 204059 36 100.0 38 .................................... GCCAATGCGGCCTATAGGCTAGGCAGCGCGGCCATGGG 204133 36 100.0 35 .................................... TTGATATCAGACAAGGTGGTGAATCCTAATGGATT 204204 36 100.0 37 .................................... GTCGGTGCGCACCCTCAACGGGACCGCGCCGATCCAC 204277 36 100.0 38 .................................... TACCTGTCTCGGTAGGCTTCGAGATCCTTCTTCGACAT 204351 36 100.0 38 .................................... TTTCCAGAAATTGGCCCCATAACTCTAATATCTGTGAT 204425 36 100.0 37 .................................... CGGTGATGTCTGGGACTGCCTCACCATTGCGGTTGAC 204498 36 100.0 38 .................................... TTCCGATTCCTTCTCGTCGCGCTGCTGCTGGAGTGCGA 204572 36 100.0 38 .................................... CAGTTCCGCAATGCGGGTTCACGGTTGATCGAGCTGAT 204646 36 100.0 36 .................................... ACGATCACTGCTGATCCTGATGCCGTCGCCGGCCAC 204718 36 100.0 36 .................................... GTAATCCGTGAAAACCGCCATAACCTCAGTTTAGAC 204790 36 100.0 35 .................................... CGCATGGCTTCGATCTTGGCTACGTCCTTCTGCGC 204861 36 100.0 35 .................................... CTATGTGCCCCCCAGTATCAGGGTCAGGTGTTGCA 204932 36 100.0 34 .................................... TCGACGGTATGACTGACATCAACATTCCTGAAGC 205002 36 100.0 36 .................................... ACCGATGAAACCGTCTACCTCGGCGCCATCTGGACC 205074 36 100.0 35 .................................... CCGCCGATCTTACCCGGCCCATACTCTAGGATGTT 205145 36 100.0 37 .................................... AGGCATCGTCTTGGAACCTCGGAACGTAGTAGTAGTA 205218 36 100.0 34 .................................... GCCTCGTCAAGCGCATTGCGGAAGCCGAATACAC 205288 36 100.0 36 .................................... ATTGTTCGCGGCCTTGATCTTGGCGGCACCCTGCTC 205360 36 100.0 35 .................................... ACGTCACCATGTTCCGCATCGATTAGGTCAGCCTG 205431 36 100.0 38 .................................... GCCGAGGTAGCCCATGGGCGTGATGCCCTGGCGAATTC 205505 36 100.0 34 .................................... ATCTTTCGTTTCCAAGGTCATCAACGTTTTTTGC 205575 36 100.0 38 .................................... TTGATGGTCTTGAGAATGGTGGCGAGGTTCAAATATTT 205649 36 100.0 37 .................................... GTTGATCGTGCCCCCGCCACTATCTCGGGTGATGATC 205722 36 100.0 37 .................................... GACCCCAGTTGCGAAGATTGATCGCATAGACGTGCAC 205795 36 100.0 34 .................................... TTACAGCTCAGCTCGCGGCAAACGGCGTATCCGG 205865 36 100.0 37 .................................... CTGGAAGACGTGCCGGAGCCGCGAAGTCGCTGATTCA 205938 36 100.0 39 .................................... TCGTGCCCGATCATCGTCGGCCGACTCATCGGCCAACTT 206013 36 100.0 37 .................................... CGGGTTCACCGCGCTCAAGGATAACGTGATCATCCCC 206086 36 100.0 36 .................................... CAGTCTCCAGTCCATCCGCCGCAGCATGTACGCGAT 206158 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 59 36 99.2 38 CCCTCAATGAAGCTCTAGAGCTGAGGCTCTAGAGAT # Left flank : TCTCATGCTTGGCGGTATGCAGTCCAGCGACCTGATAGAACGGCGCTACAGGATCGAACAGATCGAACCGGTCGTGGTAGTCCTCGCAATATTCGCGTATCATCCGCGAGACTTTGGGATCCTTAGGACCGCGGTCGAAAAGTGCCTGCCATATCTCGATCGGGAAATCATTGCCGTAGACCCCGTACAGTATGGCGATCAGCATTCGGGATAATGCGAATCGTTGCAGAGGGATATCACCGTCTATGCTGCGAATTTCGTCAGCCTTGGCAAATGTATCGGTGATGGACAGTTCGGCATACGAACCATCCAACATCGTGACGGGGATCCACGCACGATCCACCAGATTGAACGACGCCATGGCGTCCGGATCCTGTATGCTATCGGACACTCGTCACCCACCCTTTCGTCTTTGAATAGCGAGCAACAATGGCTGTCATGCGCAATACAAGTATGTGCTGTGCATGACAGCCAAACAATTCAATACGCATAGCACTCGT # Right flank : TGGTGGGCATAAAGTATGCTAGCACACTTGGCGTTATCGGGAGGATTGCGAGAGCCCTCGAATGGCATAAGAACTGAAGGAACAATCCGGGAGAAAGCGACATGCCGATATCTGCAATGTCGCATGCGAGAGGTCTGGCATAGTTCCCGTTATGATTCAGCGCTCGCGGCATATTTCGCAACCAAGATAATCCCTTTGAAATTGTCAAGCTTCCTTCATACGAGATGAGAAGTCAATTCACGGTTCTAAATAATTGTAGGGATCATGGTATCCCGGTAGCTGCGCTTACCGAGGAACAACATGGATCGTTCGGCATGGTCGTTGATTCCGAGGTCGCAGATCAGGATCGAGTCCGTATCGGAGTCGATTTCGTCCTCCACGGAGGCTTTGATCTTCAGCAGTTTCGAGGGGCGTATGCGTAGAAGGAACACGCTGTATTGCAGTCGTTCGCCGTGGCTTTGCAGGATCTTGGCGACGTGGGATCTCCTTACGTCGTCGTT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAGCTCTAGAGCTGAGGCTCTAGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 253482-253190 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXGJ01000003.1 Bifidobacterium callimiconis strain 2028B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 253481 36 100.0 28 .................................... GCGGCATACGCGTTGGTCATCCGATTTC 253417 36 100.0 28 .................................... GCAACCGGGAACGAATCAACGCACGACG 253353 36 100.0 28 .................................... ATATATACCCATGTTCCTTGTTTGCGAC 253289 36 100.0 28 .................................... TGTGTGGCCCACGGACAGCACAGACAGC 253225 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 100.0 28 CAAGTCTATCAAGAGGGATGAATGCTAATTCCCAGC # Left flank : GTTCAATGGCACGGGACTGACTATACCGAGCTCGCTGAACGACTTTGCTCAGCAATTCGGCCTGTACTGCGAAAAGAAGATTGATCGGCTGCTGGTGCCCGAGTACTTAGGTGTGCTATGAAAACGGATGAGGACAGTGGTGGTATGTGGTGTTTGGTCATGTTCGATCTGCCGGTAAAAACCAAACAGCAGCGAAAAATCGCAACGGATTTCCGCAACATGCTGCTCGACATGGGATATTGCATGGTGCAGTTCTCCGTCTACGCGCGCTACACACCGACGCAGGCAGGTAATCGAGCGACGGTTCGCGCCATTAAAGAGAACATGCCGCCCAAGGGCATGATTCGTATTCTGCATATCAGCGACCATCAATGGTCATCAGCCTTGCGGTTTTCCGGTATGCAACAGGACAAGTCTGAAGAGACCCCTGATGTGTTCACGCTTTTCTGAACGCAGAAACCCCGAGAATCCTTGAAAAATAATCCCTCTTGATCGACTAT # Right flank : TTCAGCCATTGCTTCAAGCTTCTATGAGGATAGCAGATAGTAGAACCAACGATATAATCGAACATATGTTTGAGCAACGGAATGCGGGGCGCACCTACATCGCGATCGATCTTAAGTCGTTCTATGCGTCGGTGGAGTGTGTGGCGCGGGGACTGGATCCGCTGACCACGAATCTGGTGGTGGCGGACGTGTCGCGCACCGAGAAGACGATCTGTCTGGCGGTGTCGCCGTCGCTCAAGGCATATGGGCTGCCCGGCCGCGCGCGACTGTTTGAGGTCGTGCAGAAGATGCGCGAGGTCAACGCCGACCGTCGTCTGCACGCGCCCGGCCGACGTTTGATCGACGAATCAACAAACGCGAACGAGCTCGCTGCGAACCCGAACCTCGCCGCCGGCTACATCGCCGCCAAGCCGCGCATGGCGCACTATCTCGAATGCAGTGCGAACGTCTACGCGATCTATCTCAAATACGCGGCGGAGGAGGACATCCACGTTTATTCG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAGGGATGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //