Array 1 129352-127875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAX010000001.1 Salmonella enterica strain 146 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 129351 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 129290 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 129228 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 129167 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 129106 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 129045 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 128984 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 128923 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 128862 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 128801 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 128740 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 128679 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 128618 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 128556 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 128453 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 128392 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 128331 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 128270 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 128209 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 128148 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 128087 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 128026 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 127965 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 127904 29 96.6 0 A............................ | A [127877] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147099-145484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAX010000001.1 Salmonella enterica strain 146 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147098 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 147037 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 146976 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 146915 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 146854 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 146793 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 146732 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 146671 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 146610 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 146549 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 146488 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 146427 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 146366 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 146305 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 146244 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 146183 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 146122 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 146061 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 145999 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 145938 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 145877 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 145816 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 145755 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 145694 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 145633 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 145572 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 145511 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //