Array 1 66104-64856 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOEO01000006.1 Escherichia coli strain IBS49 scaffold_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66103 29 100.0 32 ............................. CGCCCCCCAGCAGATCGCATCGCACGGGTGTG 66042 29 96.6 32 ............................C GGTGGCGCGAGTACAAACAATTATTGACGACC 65981 29 100.0 32 ............................. AAACTACGAGCTATGTTGCTTTAACATCTGCA 65920 29 100.0 32 ............................. TGTAATTTTGCCTTCATGCACAATCATTGTGG 65859 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 65798 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 65737 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 65676 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 65615 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 65554 29 100.0 32 ............................. GTTCTGCGCAGGGTTCACGAATGCGTGTTAAC 65493 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 65432 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 65371 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 65310 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 65249 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 65188 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 65127 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 65066 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 65005 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 64945 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 64884 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92170-91652 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOEO01000006.1 Escherichia coli strain IBS49 scaffold_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92169 29 100.0 32 ............................. ATCACCTCGCCCCCATCCTGATAATTCAAGTC 92108 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 92046 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 91985 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 91924 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 91863 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 91802 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 91741 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 91680 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //