Array 1 107258-106191 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTMA01000003.1 Escherichia coli strain 10432wF10 NODE_3_length_686932_cov_32.1307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107257 29 100.0 32 ............................. AATGGTCCGCCGGGTTTATCGCTCGCGTTGAT 107196 29 100.0 32 ............................. TTGCAGGAAGGCGCGGTTAACCAGAAATGGTG 107135 29 100.0 32 ............................. ATATTAAATCCGAAACAGCATTAAATAACAGG 107074 29 100.0 32 ............................. CTGATATTGTTATCGAGGCGATATTGACTGCG 107013 29 100.0 32 ............................. GCAGCACCACCCTGACTTTACGGCTAAACGGA 106952 29 100.0 32 ............................. CGGGATTTGGATTTAGTAACGAGACTGTTATG 106891 29 100.0 32 ............................. GTTTTAACTGTTTGGGTTACTGGCATCTTTGT 106830 29 100.0 32 ............................. CCGCACCAGTGCCGAAATGCAATGCTGATTTG 106769 29 100.0 32 ............................. TTCGGCAAGAACAGAAACGTCCGGTGCAGCAA 106708 29 100.0 32 ............................. TACCCAAAAACGGGAGTATTTAGAGGAAGCGA 106647 29 100.0 32 ............................. AAAACAAATGAGATTTTATCCGTGCTTGTTCC 106586 29 100.0 32 ............................. CGCCCAATGTTTTTATTGAGACGCTCCCGGAT 106525 29 100.0 32 ............................. CGGAAATTTGTGTCAGATATTGCCGGGAACAT 106464 29 100.0 33 ............................. ATATGGCCGGTTGGCGCAATATTGATACTTTGC 106402 29 100.0 32 ............................. ACGAATTCATTTCTGCCCGCAAAAAAGAGGAC 106341 29 96.6 32 ............G................ CTATTGCCGATCGCTTTGTATCGCGCCCCGTC 106280 29 100.0 32 ............................. GCCCAGGGATTTGTTCAATCCAGCGTGCCGCT 106219 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATTTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 133534-132956 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTMA01000003.1 Escherichia coli strain 10432wF10 NODE_3_length_686932_cov_32.1307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133533 29 100.0 32 ............................. AGTAATACATTTCTCCTGTTTTTCATACTGCT 133472 29 100.0 32 ............................. CCAGCAGTGGTACGTTAACAATCAATCGATAC 133411 29 100.0 32 ............................. TTGTCGGTACAGCTCCAGCATTAATCCCCACC 133350 29 100.0 32 ............................. AACGCGAAACGGGTCGAGGCCATACCATAATT 133289 29 100.0 32 ............................. TTGCTAAACGCATTGCACCTCTTCGTGAAAGA 133228 29 100.0 32 ............................. CTATTTGGGCTGACAGATAACGTCTGCGCAGT 133167 29 100.0 32 ............................. TCGCTACGACCACACTGGATCAGGAACAACTT 133106 29 96.6 32 ............................C AGATTAAAATCAATCATTTTTCCACTCCCTGC 133045 29 96.6 32 ............G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 132984 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //