Array 1 33035-33541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNE01000025.1 Pseudomonas aeruginosa strain AZPAE15042 AZPAE15042_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33035 28 100.0 32 ............................ ATAGGCATAACTCCCGTCTGGACCGCTAGAGA 33095 28 100.0 32 ............................ TGTCCGGGGAAGTAGATGAACGAGCCGCAGAC 33155 28 100.0 32 ............................ AGTCAGTCGAAGAGCCGGATTGGGCTGGTAGA 33215 28 100.0 32 ............................ GTAGCGCTTGCGGTCTGCCGGGTCGACCTCGG 33275 28 100.0 32 ............................ GAGCAGGCAGAGGCGGAGCGGCCGGAGGTTGT 33335 28 100.0 32 ............................ TCGGTGATGCCCCGGCGAACCGGGGCGGAATG 33395 28 100.0 32 ............................ ATCGACGCCGCCCTGGGCCGCCTGGTCGAGCC 33455 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 33515 27 92.9 0 ..G.....................-... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : AATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGGATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAATCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 42711-42083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNE01000025.1 Pseudomonas aeruginosa strain AZPAE15042 AZPAE15042_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42710 28 100.0 32 ............................ CGCTCTATGCGTCGCAGCAGGTCCTCGGTGAC 42650 28 100.0 32 ............................ GTCAGCAGGCGCAGGAATAGCTTTCACCAGTT 42590 28 100.0 32 ............................ TGCGGGGCTGCTGGCAAGGTTGGAAGCTGCAC 42530 28 100.0 32 ............................ ATGACCCAAGCAAACAACGGAAAGATCACCAC 42470 28 100.0 32 ............................ TTCTTCCCGCGCTTGCTGTTGCGGAACTCCTC 42410 28 100.0 32 ............................ TGGGAGTGGCCGCGCATCAACGCCGGCTACTT 42350 28 100.0 32 ............................ GAAACCAGGGAGCCCATCTGATCGAGCCTCAG 42290 28 100.0 32 ............................ AGGATGTCGCCGTCCGTGACAGCAACTGCTAT 42230 28 100.0 33 ............................ TTCGAGGCGCTGTACGCATGCCAACAGTGGCTA 42169 28 96.4 32 .....T...................... CGTTGATCTAATGCGGATGCGGGTGGAAACAG 42109 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGATCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATGCCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 139794-140483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNE01000014.1 Pseudomonas aeruginosa strain AZPAE15042 AZPAE15042_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139794 28 100.0 32 ............................ TTGCGATCAAGGGGCTGCAACACGGCCTTGCG 139854 28 100.0 32 ............................ AAGCTCACCGGCCCGGCGGAACTGCTCGCCGA 139914 28 100.0 32 ............................ ACAAGTAACCCACCCGAACCCATCAGGAGAGC 139974 28 100.0 32 ............................ CTGAACCCGATCCTTGAATGCGAGCTGCCGAT 140034 28 100.0 32 ............................ TTGACAACATGGCGGTGCTGGCGGAAACCGTT 140094 28 100.0 32 ............................ TTGGTCTCAATGATCATTTTCACGCGGCGGTC 140154 28 100.0 33 ............................ AGAATAACGCCCACCACTTGTGACAGGTAACGG 140215 28 100.0 32 ............................ AGAGGAAGCCGAATGCGCCCTTGGCGGTATCG 140275 28 100.0 32 ............................ GTGCGAGTTAGAACGAGCAGCCCCATTGCAGG 140335 28 100.0 32 ............................ ACGATGTTGAAGTAGCGCCGCTTCTGTTCTTC 140395 28 100.0 32 ............................ TGTACTGCCTTGAGTTTGACTCTAGAGTGGGC 140455 28 82.1 0 ......................G.CTTC | C [140475] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCAGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACCTCCTCGCCATGACCTGCCTGCTCGACGAAAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACACCAGTAGCGCCCGGCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCACGCAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATAACTTACAAAGACATGAAAAAAGAGGGTTTCAGACCAGGAAAACCCGGTATTCCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CCCTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGCAGACACTGCCGCCCACACCCGGCATTCCCCTGACGAAACGAATAGCCTGTCCGTTCCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGAATGAGTGCAATGGACCTCAAGCGCCGCCGCGTCATGCAAGGCCTGGGCGCTGGGCTGCTGTTGCCGGCGCTGGGCGCGCCGGCGGTGATCGCCGCGCCGAATGCGCGGCCGAAGCTGACCGATGGCGTGCAGTCCGGTGACGTGCACGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGTCCGGCACGGATGATCGTCGAGTGGGACACCCGCAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGATCACCGACGAGCGTCTCGACTACACCGCGCGCATCGATCTGCGCGGTCTGCCGGCCGACCAGTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //