Array 1 238003-238795 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFA01000004.1 Salinivibrio sp. PR6 scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 238003 28 100.0 32 ............................ AGACAATCCAAGCGAGAGTTCCAATGAATAGT 238063 28 100.0 32 ............................ TTTATGGCGATTAAGCGCGTGCCAACTAAAAC 238123 28 100.0 32 ............................ GGTGTGTTGTAGTTGATGCTATCGGCATAAAC 238183 28 100.0 32 ............................ TCAGCGCGGCTGATGATAGCTGCCATGCGTGG 238243 28 100.0 32 ............................ GAAACAGAAGACTGTGGCGACGGCAACGGGGA 238303 28 100.0 32 ............................ TATTTAATATTACTAAACATTTCGACCAGCGT 238363 28 100.0 32 ............................ GTGTCGGTTGTTGAGGTGTGTTCTGCCATTTT 238423 28 100.0 32 ............................ GCTGAGTGTAATGCCAACTATTTGAGTGTGCA 238483 28 100.0 32 ............................ TGTACGCAGTTTCAATAACTTGTTATATTGTT 238543 28 100.0 32 ............................ AAGATGCCAGAAGACACCCCGATTGATGCAAA 238603 28 85.7 136 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATAGATGGCGGACATTGCACTGGCGCTT 238767 28 71.4 0 ..C...CTA............G...GTG | G [238771] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 12 28 96.4 42 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CACTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGTATCACGCTCCTGGAACGCAGGGCTGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCGGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCAATAAGTGGGGATGCCTAAACCCCTTATGACCCTTATTTTTTGGCTATTTAAAAATAAACAATAAATACAGCTAGTTACGGAATCCTCTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : GACACAAGCGCCGGTACGGTGTTGGATATATAAAACTGTCAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTATCATGGCGTCATTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGGCTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACGGTCGATGAGCCGGTACACCTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGGCGGAGCACAGCGATG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 240719-241467 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFA01000004.1 Salinivibrio sp. PR6 scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240719 28 100.0 32 ............................ AGTTTGCTTGCTCATTTGCTCATTTGACCTTT 240779 28 100.0 32 ............................ ACATCCAGCGGTAACAGAATGACATTCAAAGC 240839 28 100.0 32 ............................ TTAATAATACAAGCTGAATGTATATCGTCACA 240899 28 100.0 32 ............................ ACGAATTACAAACAGCACTAAAATATAATCAG 240959 28 100.0 32 ............................ TCGCAAATATATAGACCATCTTTAACGCCTAT 241019 28 100.0 32 ............................ TAAAAATGGATGCGTACACACTCGACAAGCTG 241079 28 100.0 32 ............................ AGGATAAACGCACACGATGAAACGGATAATGC 241139 28 100.0 33 ............................ GTCGCCAAGGGCTGACAAGGGGACAGGAAGCAT 241200 28 100.0 32 ............................ CATCACGAATTACAAACGGCGCTAAAGTATAA 241260 28 100.0 32 ............................ AAGCGGAAATGACGGCCAACCTGCGCAAACTG 241320 28 100.0 32 ............................ TTACCGCTTTGCAGATAAAACCGCGCATGGAC 241380 28 100.0 32 ............................ ATATGCTCGTTGGGCGAGTAGCGGCCATAGTT 241440 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCGATCGCATGTTGCCGCGTCTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCCTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACGAGGACTTCACCATCGGTTCATGATCCAGTCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGGCTATTTAAAAATAAACAATAAATACAGCTAGTTAAGGAATCCCTTTTTTAACAAGGGTAAAAGGCCATTTTTGTCCTAACAGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : GACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 252463-253136 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFA01000004.1 Salinivibrio sp. PR6 scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 252463 28 100.0 32 ............................ TAACGGAATCGCAAATGGCATGGCGCTTACTC 252523 28 100.0 32 ............................ GTTACCATAAAAATCGTCACTATATGTGTCGT 252583 28 100.0 32 ............................ GTTCCAGCGCCATCTTTTGGAATTGGGCTTCA 252643 28 100.0 32 ............................ TAAAGGCTGGATCTGGAAAGGCATCACGCTTT 252703 28 100.0 32 ............................ GGTACCCAACGTGATAGCGGTAACGGTTTTAG 252763 28 100.0 33 ............................ ACCACAAAATCCTGCTAAAAATCGGCGCTTTCT 252824 28 85.7 136 .....................G...GTG ACACAAGCCCCAGCAATATGTTGGATAGGGGACATTGCTAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGTCTGACATTGCACTGGCGCTT 252988 28 85.7 32 ..C...CTA................... TTGAATGGGCGCTTGGGTGCCGGTGTGCTCTG G [252992] 253049 28 96.4 32 .............T.............. AGTGTCTGTGTTCACGCTGTGTTTCTTGTTTC 253109 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 10 28 96.8 44 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAAGACTATGCCTACTTCAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAAGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCACTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGAAGGGCAGCCAAATACCGAGTTCGCCTTGTATATCGAGCGGGAACTCACCAAACAGCCGCCTAATAATGACCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTTGGCTCTTAAAAAATAAACAGAAAATACAGTCACTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTACCTGACGATTGTTACGTTATTCTATA # Right flank : AGCACCGATATTCGTTCATGAACGCGCGCTTGTCACGGTTGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGCTAATAGATGGTTGACATCATACTGGCGCTTGTCGACCTACGTGAACGTTAACGTCGGTGGTGCCATTGGCGATGCTGCCTGTCTGGCTTTTTCATTGAAATGACTAGTTTAATGTATCTCTTAGCCACTTAACTTTATGGCCCTACATTAATCATTGCGTTTATTTTTATCGAGTAATCAAAAACTAATTGATATCGAGACTTTTCCTGTCCAGCTTTTTTTAATTGATGGCGAGAATCTATTCTACGATCAAACGGTAGCGGCATTTTGGTCGATGTTGTCTGTTGTTGAGTGGCAGGAGTTGGATATGAACATCAATAACACCATGAAGTTAGTGTTCTTTATTATTGGGGCAGGGATTGTCGTTAGTTTTATAACTATTATTCAACTCAACGGCCTGATGAATAAAGTCG # Questionable array : NO Score: 5.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //