Array 1 59547-64241 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVH01000009.1 Pediococcus cellicola strain NBRC 106103 sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 59547 32 100.0 33 ................................ CGATTATTGCATTGTCACAACTTAATCGTGGCG 59612 32 100.0 35 ................................ CGAAAGCAGGCTACTATGCTCGTTTAGGAGCTGAT 59679 32 100.0 34 ................................ ACAACAGCAAAGCGAGTTATTAAAAACTCTGATT 59745 32 100.0 33 ................................ CTTTCATCCGTGGAAGAGGGCTAGAACAAGTAC 59810 32 100.0 35 ................................ AACGTCAGTCGCTAGTACCGCACCAATTGGTAACC 59877 32 100.0 35 ................................ AAACAATCAGGAAAACTCATTCGAGGCAATTCCAA 59944 32 100.0 34 ................................ GCTACATGAAGCGTGCTTATGGGTCTGGTGCAAG 60010 32 100.0 35 ................................ TATGAACCCGAATGCTGACCAATTTGGTGGTAGGA 60077 32 100.0 35 ................................ AGTGGGTTACAGCTAGGTGGTATTGGAATTATTGC 60144 32 100.0 34 ................................ ATGCGATTGGAACTATTCAGACTGGTAATATCGC 60210 32 100.0 34 ................................ CTTGAAGGTTCCATTACCTCCAAATCAATTGAAA 60276 32 100.0 34 ................................ AAGTGCAGCTGATAATGCTGACAGTGCAGCAGTT 60342 32 100.0 34 ................................ ACCAGATTACGTGTTCAAAGGCAATTGGGCTAAT 60408 32 100.0 34 ................................ AATCCAGCCCATGTTGGCCTGCTCAATTGCATTG 60474 32 100.0 35 ................................ AGTAATGCTTAAAATTACTGGATCATTGCAAGACC 60541 32 100.0 34 ................................ CCTGATACTTAGACCAGTCTGGCCCTTGATCACG 60607 32 100.0 36 ................................ TGAACAGCATGGTGAAATAACCATTGATACTGACAC 60675 32 100.0 36 ................................ AATGGGTAATCCAAGCGGGTCAAGTGTGAAACGCTG 60743 32 100.0 35 ................................ AATGGAACTCCAATTTCTAGCAAGACTGCTCGTGG 60810 32 100.0 35 ................................ ACAACGTGGCTGGCGGTTGGGTTGGTGACTATCGT 60877 32 100.0 35 ................................ AGAACGATTACATGGTGGAATGCACATGGAAAGTA 60944 32 100.0 36 ................................ TTATTGTCATTCTTGCATTGGCAAATCATGCCGAAA 61012 32 100.0 35 ................................ AAAACTGCAAGTGGCGTTTACACTAGTTCCAACAA 61079 32 100.0 34 ................................ TAGGCATGCCATAGCTTCCGTATTTAATTATCCA 61145 32 100.0 35 ................................ ATCAGTGATCGCAACTAACACCGAAGAAGAGTATT 61212 32 100.0 35 ................................ ATCAGTAGCTTTCTTTGTGCGTGGGTACGCAACAT 61279 32 100.0 34 ................................ ATGAAATTCTTAATAAAATCAGGTGAAATTGGCT 61345 32 100.0 34 ................................ CCTAATAAGTCCAGTGACTTTAAAGAATAAGCTT 61411 32 100.0 37 ................................ ATAATATCCGACCAAACACCTTTATACGTTTCAGATT 61480 32 100.0 35 ................................ GAATCCGTATTGAAATACATTAACTTGCGTGACCA 61547 32 100.0 34 ................................ ATATCCTCCTTACAAAAATAGCGGCCAACCAACA 61613 32 100.0 36 ................................ GCACTTGAATCCGACAACGAGTAGGGTCGCTCCCAA 61681 32 100.0 36 ................................ AATTATTGTTCAACAACCACCGCGCACCGGCAAAAC 61749 32 100.0 34 ................................ TTATAATCGTAATCGCCCACCAATTTTTTAACCC 61815 32 100.0 35 ................................ CTGTCCTAGGCCAGATAGCATGTGGAGACCCAATC 61882 32 100.0 35 ................................ TGAAAATGGACGTCAATTATATGTAGTTAAGAATT 61949 32 100.0 35 ................................ AGGTCTTGCTCGTAGTCGTCGCGAACCTGCAGAGT 62016 32 100.0 34 ................................ GACACATGAGAAGCTAGCATATCAGAAAGTTCGA 62082 32 100.0 35 ................................ TGGACTGGTAGCAGGAGTGATGATCGGAGACGCTG 62149 32 100.0 34 ................................ TTGTGTATTGGAGCTCCGCAAGTTGTGGTGTTTC 62215 32 100.0 35 ................................ ATCAATGGTATCGCCCATACTTGCGTTTACATAAG 62282 32 100.0 33 ................................ AGAACAAGTAAATCAGCAAGTGGTTAAGACTGC 62347 32 100.0 35 ................................ AAAATGCACGTCATAATTTTCTAACAACCAATAAT 62414 32 100.0 35 ................................ TTGTTTAGGCAAATTTACACCATTAAAATCGCAAT 62481 32 100.0 34 ................................ ACAATAAGAATAACATGGGGTGGTATGACTGCGC 62547 32 100.0 33 ................................ AGAAGGCTTATAGTGCTGACCAAGATAATTTTA 62612 32 100.0 35 ................................ CTTTATCTATTGGAGAAAGGGCGGCCCTAGATGAT 62679 32 100.0 35 ................................ TACAAGTTGTAGGTTTGATCGCAATCGGCGCAGTG 62746 32 100.0 33 ................................ ACGCAATCCATCCCGGTAAGGTTGTCGCTACCG 62811 32 96.9 33 ...G............................ GTTCATCTTCGCATTCGCGCGGGTGTTATTTAA 62876 32 96.9 34 ...G............................ ATAGCATAGTTGTATACCTCTTCGCGGGTACTGG 62942 32 96.9 34 ...G............................ CATATATCACGCCATTAAACTATCAAACCTTAGA 63008 32 96.9 35 ...G............................ ATCACAAAATCATATCCGAACATGTCCACCAAACC 63075 32 96.9 33 ...G............................ TTTAACCGAGTAAGCAGTAATTGAGTTCCAGCC 63140 32 96.9 35 ...G............................ GATTCTAAAGATAAAGCAAAATTTAACAAGCAATT 63207 32 96.9 35 ...G............................ CGACACCAAGGCTGAACGGAATGCAACTATGTTTG 63274 32 96.9 33 ...G............................ TCAAGTCATGATGGTGTTGACTTTTCTGGCGCT 63339 32 96.9 35 ...G............................ TTAACAGGCGATGGTAATAACAAACCAATTGGTTT 63406 32 96.9 33 ...G............................ ATTTGAGTTTCTAAGTATTCCTTGGCCAATCCC 63471 32 96.9 35 ...G............................ CATAAACAGTGCAAAATCATTGTTAGTTCGCAAAT 63538 32 96.9 34 ...G............................ AAAAATCTTAGGGTGCTTGCTAATGCTGTTAATG 63604 32 96.9 39 ...G............................ AGAAATAGCGCCATAACGTTCAATTGTGAAAGTGTTACC 63675 32 96.9 36 ...G............................ AACTTGACCCGCCACACTAAGCCCGTTAGCGTGTCA 63743 32 96.9 36 ...G............................ TAAAAATACTAAACCTAAAACTAAACCAGCTAAGAA 63811 32 96.9 36 ...G............................ ACATCGTCTTGCATAATCTGTTTGATAGCTGCTACT 63879 32 96.9 35 ...G............................ TTGATGATATTGCTCAGAACACTAAGGATACTTTT 63946 32 96.9 34 ...G............................ AAAAAGCTTATAGTGCTGACCAAGATAATTTTAT 64012 32 96.9 33 ...G............................ TTTAACATCTGCCATAATATAGATCTCCTTTTA 64077 32 96.9 34 ...G............................ ATTTTCTTTAGAGCACTTGTATGATCTGATAAAA 64143 32 96.9 35 ...G............................ CAGTCAATGCAGATGGAACTACTACAGCTTATGTA 64210 32 93.8 0 ...G.......................A.... | ========== ====== ====== ====== ================================ ======================================= ================== 71 32 99.0 35 GTCACATCCTTTATGGATGTGTGAATTGAAAT # Left flank : CCAAATACAGTTGCTAACTTGTTTCAGGTAATCGATTCAGCAACAACTGATGTGATTGTTCAGTATGGTGAGGGCAAAAATATTGCAGCTCAACTCATTTCTGAAAAAAGTAAATTTGAAAACATTTCGGGACTTTTAAAGCAGGCTCAAAAATATTGTGTTTCTGTTTATGGAGATCCGGGGAAAAAGGGTAGTTATCTCGGTAAACTAGTTGCAGATGGTAGTGTGCGTTATTATCCAGAACAGGATATTTTCATTGCTGAAGAAGGCTCATATAGTGAAGAATTTGGTTTGGGAGAAGGCAGATTTGGCTCTTTAAATTACTAATGCAATTGGTAGTAAAGTGCGAGAGTGAAGTGCACACAGAATTACAAGGCGATTCGCACCAATATTTGCAGAAAATTGTTTATTTTTTGTTGTATTTATTCGTTAAAAGTTTTTAAATTATGTACAGCCGTCTAAATATAGGTACTCGATAATTGAGTACACTATATTTTGCG # Right flank : TAAGCATCGTTTCAGATACTAATGTTAGTTATTCATATTTTTCACAATATATGAAGTTTATAAATAAAGCGTTTACATTTCTAAAAACGATGATATTATGATGTTAGAGAATGATACTACGTTACAGTGGAGATGAAAAAAGTGGAATATTCTGAAGATGATTTTCTGATGATATCTGGAATACAGCATTTTCGTTTTTGTCAACGACAATGGTCGCTAATTCATGTTGAACAGGCGTGGCAAGATAATTTTTTAACATATGATGGACAAATTTTACATACAAAAGCAGATCAGCCTGAAATTCGGGAGAAAAGAAAAAATAAATTAATTGTACGCTCTCTACCAATCCATTCCCGTGAACTGGGGTTGACAGGCATTTGTGACGTTGTTGAATTTGAAGAGGACCCTAATGGTGTAACCGTTTTTGGCAGTGACAAAAAATATATACCTAAACCAGTTGAATATAAGCATGGACACAAAAAATATGATTTGTCTGATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTTTATGGATGTGTGAATTGAAAT # Alternate repeat : GTCGCATCCTTTATGGATGTGTGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //